Wall clock time and date at job start Wed Apr 1 2020 04:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00210 * 2 1 4 4 H 1.48500 * 109.46920 * 270.00139 * 3 2 1 5 5 H 1.48505 * 109.47297 * 29.99923 * 3 2 1 6 6 H 1.48498 * 109.47351 * 149.99890 * 3 2 1 7 7 C 1.37880 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99554 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00048 * 180.02562 * 7 2 1 10 10 C 1.50703 * 109.47030 * 180.02562 * 9 7 2 11 11 C 1.38274 * 119.92965 * 89.99878 * 10 9 7 12 12 C 1.38113 * 120.07254 * 180.02562 * 11 10 9 13 13 C 1.38880 * 119.92708 * 359.97438 * 12 11 10 14 14 N 1.39919 * 120.06967 * 179.97438 * 13 12 11 15 15 C 1.34773 * 120.00136 * 35.08289 * 14 13 12 16 16 O 1.21284 * 120.00267 * 355.37689 * 15 14 13 17 17 C 1.50699 * 120.00186 * 175.37272 * 15 14 13 18 18 C 1.52995 * 109.47470 * 180.02562 * 17 15 14 19 19 C 1.53007 * 109.47297 * 180.02562 * 18 17 15 20 20 H 1.08995 * 110.34792 * 307.14303 * 19 18 17 21 21 C 1.54944 * 110.30912 * 185.00098 * 19 18 17 22 22 C 1.55306 * 100.94297 * 204.63923 * 21 19 18 23 23 H 1.09000 * 110.84414 * 275.94565 * 22 21 19 24 24 C 1.50702 * 110.85013 * 152.32060 * 22 21 19 25 25 O 1.20827 * 119.99803 * 0.02562 * 24 22 21 26 26 O 1.34224 * 119.99809 * 179.97438 * 24 22 21 27 27 C 1.54385 * 102.24958 * 34.13132 * 22 21 19 28 28 O 1.43239 * 107.59005 * 338.64728 * 27 22 21 29 29 C 1.38874 * 119.85601 * 0.24999 * 13 12 11 30 30 C 1.38113 * 119.92878 * 359.52223 * 29 13 12 31 31 H 0.97002 * 119.99415 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.47114 * 60.00144 * 9 7 2 33 33 H 1.08993 * 109.46914 * 300.00103 * 9 7 2 34 34 H 1.08008 * 119.96567 * 0.02562 * 11 10 9 35 35 H 1.08002 * 120.03991 * 179.97438 * 12 11 10 36 36 H 0.96998 * 120.00148 * 215.07772 * 14 13 12 37 37 H 1.09006 * 109.47064 * 60.00358 * 17 15 14 38 38 H 1.09003 * 109.47582 * 300.00645 * 17 15 14 39 39 H 1.09001 * 109.47520 * 60.00038 * 18 17 15 40 40 H 1.09000 * 109.47170 * 299.99994 * 18 17 15 41 41 H 1.09004 * 111.12492 * 322.55846 * 21 19 18 42 42 H 1.09001 * 111.12458 * 86.71812 * 21 19 18 43 43 H 0.96701 * 116.99933 * 180.02562 * 26 24 22 44 44 H 1.09004 * 109.83111 * 98.16174 * 27 22 21 45 45 H 1.09004 * 109.83148 * 219.13251 * 27 22 21 46 46 H 1.07998 * 120.03175 * 179.74875 * 29 13 12 47 47 H 1.08004 * 119.96410 * 180.23272 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0139 -2.6149 0.0010 11 6 4.2442 -3.2651 -1.1974 12 6 4.7041 -4.5675 -1.2010 13 6 4.9356 -5.2238 0.0009 14 7 5.4009 -6.5433 0.0008 15 6 6.2576 -6.9557 -0.9544 16 8 6.5600 -6.2092 -1.8612 17 6 6.8400 -8.3444 -0.8958 18 6 7.7746 -8.5563 -2.0885 19 6 8.3654 -9.9665 -2.0293 20 1 8.8216 -10.1457 -1.0557 21 6 9.4105 -10.1595 -3.1567 22 6 9.3761 -11.7025 -3.3296 23 1 10.0264 -12.1889 -2.6024 24 6 9.7539 -12.0933 -4.7352 25 8 10.0305 -11.2409 -5.5456 26 8 9.7841 -13.3885 -5.0865 27 6 7.8942 -12.0308 -3.0476 28 8 7.3468 -10.9451 -2.2904 29 6 4.6987 -4.5695 1.2027 30 6 4.2434 -3.2656 1.1994 31 1 -0.4849 0.8401 0.0004 32 1 3.8745 -0.6801 0.8911 33 1 3.8752 -0.6805 -0.8888 34 1 4.0644 -2.7540 -2.1317 35 1 4.8835 -5.0749 -2.1373 36 1 5.1070 -7.1613 0.6882 37 1 6.0345 -9.0780 -0.9301 38 1 7.4013 -8.4643 0.0309 39 1 8.5801 -7.8228 -2.0538 40 1 7.2137 -8.4364 -3.0154 41 1 9.0994 -9.6547 -4.0714 42 1 10.3971 -9.8216 -2.8399 43 1 10.0326 -13.5901 -5.9990 44 1 7.3532 -12.1356 -3.9881 45 1 7.8228 -12.9548 -2.4737 46 1 4.8739 -5.0786 2.1389 47 1 4.0626 -2.7550 2.1337 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608183221.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:19 Heat of formation + Delta-G solvation = -158.636445 kcal Electronic energy + Delta-G solvation = -28573.506476 eV Core-core repulsion = 24299.654858 eV Total energy + Delta-G solvation = -4273.851618 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.29637 -40.38220 -39.57114 -38.22896 -36.76320 -34.97001 -34.01889 -33.06154 -32.92181 -30.92550 -30.33593 -29.43724 -27.07610 -24.94232 -24.80583 -22.85488 -22.35893 -21.60017 -21.18154 -20.41506 -19.94223 -18.67737 -17.91657 -17.62222 -17.26077 -16.74730 -16.72470 -16.15039 -15.92496 -15.54284 -14.97065 -14.93425 -14.41632 -14.33437 -14.06584 -13.86488 -13.83299 -13.35455 -13.17933 -12.88364 -12.72330 -12.44006 -12.37083 -12.29962 -12.25888 -12.05800 -11.68941 -11.66994 -11.53884 -11.41647 -11.28942 -11.14913 -10.84194 -10.47223 -10.17202 -10.12767 -10.06716 -9.78846 -9.45453 -9.29673 -8.56390 -8.31788 -7.41129 -6.05548 -4.04421 1.51965 1.82885 2.03202 2.28707 2.69353 3.10388 3.19130 3.30785 3.38280 3.41425 3.55945 4.13519 4.21994 4.29447 4.39851 4.43550 4.49721 4.57091 4.68750 4.83663 4.90488 5.03662 5.06102 5.17673 5.22325 5.26396 5.33222 5.41302 5.49385 5.56418 5.68808 5.85377 5.88661 5.91481 6.00872 6.07624 6.14363 6.41534 6.59266 6.75486 6.84688 6.97930 7.06260 7.10115 7.23253 7.49842 7.61144 7.63584 7.73914 8.18387 8.51900 9.00000 9.54964 11.07414 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.028965 B = 0.001480 C = 0.001453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.440085 B =18918.705477 C =19267.896452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.513 4.513 8 H 0.074 0.926 9 C 0.014 3.986 10 C -0.039 4.039 11 C -0.107 4.107 12 C -0.117 4.117 13 C 0.105 3.895 14 N -0.670 5.670 15 C 0.508 3.492 16 O -0.524 6.524 17 C -0.136 4.136 18 C -0.103 4.103 19 C 0.081 3.919 20 H 0.080 0.920 21 C -0.138 4.138 22 C -0.121 4.121 23 H 0.124 0.876 24 C 0.489 3.511 25 O -0.505 6.505 26 O -0.515 6.515 27 C 0.069 3.931 28 O -0.370 6.370 29 C -0.143 4.143 30 C -0.106 4.106 31 H 0.264 0.736 32 H 0.028 0.972 33 H 0.023 0.977 34 H 0.122 0.878 35 H 0.130 0.870 36 H 0.406 0.594 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.414 0.586 44 H 0.074 0.926 45 H 0.085 0.915 46 H 0.115 0.885 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.512 -29.201 -2.816 36.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.550 4.550 8 H 0.092 0.908 9 C -0.023 4.023 10 C -0.039 4.039 11 C -0.126 4.126 12 C -0.136 4.136 13 C 0.013 3.987 14 N -0.315 5.315 15 C 0.295 3.705 16 O -0.399 6.399 17 C -0.176 4.176 18 C -0.141 4.141 19 C 0.024 3.976 20 H 0.098 0.902 21 C -0.175 4.175 22 C -0.141 4.141 23 H 0.142 0.858 24 C 0.331 3.669 25 O -0.392 6.392 26 O -0.327 6.327 27 C -0.008 4.008 28 O -0.290 6.290 29 C -0.163 4.163 30 C -0.125 4.125 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.042 0.958 34 H 0.140 0.860 35 H 0.147 0.853 36 H 0.241 0.759 37 H 0.120 0.880 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.118 0.882 42 H 0.113 0.887 43 H 0.273 0.727 44 H 0.092 0.908 45 H 0.103 0.897 46 H 0.133 0.867 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 21.361 -28.243 -3.231 35.558 hybrid contribution 0.529 0.297 -0.302 0.678 sum 21.891 -27.946 -3.533 35.674 Atomic orbital electron populations 1.69904 1.06260 1.26936 1.50803 1.24998 0.94732 0.99012 0.94507 0.86804 0.80390 0.83655 0.78662 1.20167 1.21277 1.18921 1.20950 0.88298 0.94657 1.51141 0.90813 1.18806 0.97405 0.88720 0.97356 1.20305 0.93330 0.98099 0.92175 1.20996 0.99100 0.94105 0.98365 1.21133 0.99823 0.95577 0.97111 1.17574 1.02242 0.84569 0.94330 1.43426 1.45827 1.11252 1.30950 1.20820 0.78377 0.89576 0.81693 1.90719 1.59694 1.56011 1.33498 1.21627 1.01075 0.94073 1.00834 1.21501 0.99744 0.93820 0.99037 1.23108 0.87438 0.89387 0.97670 0.90218 1.23359 1.01289 0.91819 1.01051 1.22629 1.00374 0.99162 0.91910 0.85762 1.22967 0.73359 0.80063 0.90534 1.90773 1.44471 1.51291 1.52623 1.84521 1.81883 1.28260 1.38034 1.22981 0.89553 0.91252 0.97025 1.88486 1.34771 1.31794 1.73935 1.20749 1.04452 0.95450 0.95639 1.20846 0.99609 0.93671 0.98376 0.92635 0.95411 0.95832 0.86035 0.85251 0.75887 0.88029 0.88751 0.89403 0.89912 0.88250 0.88663 0.72677 0.90807 0.89721 0.86681 0.85952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.51 -14.68 9.65 -34.44 -0.33 -15.01 16 8 H 0.07 2.31 7.98 -52.49 -0.42 1.89 16 9 C 0.01 0.35 4.17 -29.03 -0.12 0.23 16 10 C -0.04 -0.83 5.07 -104.59 -0.53 -1.36 16 11 C -0.11 -2.17 9.69 -39.61 -0.38 -2.56 16 12 C -0.12 -2.16 8.70 -39.39 -0.34 -2.51 16 13 C 0.11 1.71 6.30 -83.69 -0.53 1.19 16 14 N -0.67 -8.10 5.34 -9.86 -0.05 -8.15 16 15 C 0.51 6.20 7.67 -10.99 -0.08 6.12 16 16 O -0.52 -8.53 13.42 5.55 0.07 -8.45 16 17 C -0.14 -1.04 5.63 -27.89 -0.16 -1.20 16 18 C -0.10 -0.82 4.23 -26.73 -0.11 -0.93 16 19 C 0.08 0.48 3.41 -25.70 -0.09 0.40 16 20 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 21 C -0.14 -0.78 5.70 -24.48 -0.14 -0.92 16 22 C -0.12 -0.56 3.50 -89.82 -0.31 -0.88 16 23 H 0.12 0.30 8.14 -51.93 -0.42 -0.12 16 24 C 0.49 3.03 7.50 36.01 0.27 3.30 16 25 O -0.50 -4.93 16.45 -18.75 -0.31 -5.23 16 26 O -0.51 -1.98 13.42 -39.24 -0.53 -2.51 16 27 C 0.07 0.36 7.39 37.88 0.28 0.64 16 28 O -0.37 -2.74 10.81 -35.23 -0.38 -3.12 16 29 C -0.14 -2.29 9.97 -39.39 -0.39 -2.68 16 30 C -0.11 -2.02 9.69 -39.61 -0.38 -2.40 16 31 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.03 0.66 7.14 -51.93 -0.37 0.29 16 33 H 0.02 0.56 7.51 -51.93 -0.39 0.17 16 34 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 35 H 0.13 2.40 6.22 -52.49 -0.33 2.07 16 36 H 0.41 3.41 8.82 -40.82 -0.36 3.05 16 37 H 0.10 0.70 7.99 -51.93 -0.42 0.28 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.71 8.10 -51.93 -0.42 0.29 16 40 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 41 H 0.10 0.77 7.29 -51.93 -0.38 0.39 16 42 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.41 0.05 9.10 45.56 0.41 0.47 16 44 H 0.07 0.41 7.81 -51.93 -0.41 0.01 16 45 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 47 H 0.12 2.19 8.06 -52.48 -0.42 1.77 16 LS Contribution 394.63 15.07 5.95 5.95 Total: -1.00 -37.25 394.63 -8.64 -45.89 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -6.04 Total: 2.37 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -3.46 Total: -16.68 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.72 Total: -35.12 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -1.14 Total: -19.32 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.25 -8.64 -45.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183221.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.742 kcal (2) G-P(sol) polarization free energy of solvation -37.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds