Wall clock time and date at job start Wed Apr 1 2020 04:31:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86799 * 120.00210 * 2 1
4 4 H 1.48500 * 109.46920 * 270.00139 * 3 2 1
5 5 H 1.48505 * 109.47297 * 29.99923 * 3 2 1
6 6 H 1.48498 * 109.47351 * 149.99890 * 3 2 1
7 7 C 1.37880 * 119.99993 * 179.97438 * 2 1 3
8 8 H 1.07997 * 119.99554 * 0.02562 * 7 2 1
9 9 C 1.50702 * 120.00048 * 180.02562 * 7 2 1
10 10 C 1.50703 * 109.47030 * 180.02562 * 9 7 2
11 11 C 1.38274 * 119.92965 * 89.99878 * 10 9 7
12 12 C 1.38113 * 120.07254 * 180.02562 * 11 10 9
13 13 C 1.38880 * 119.92708 * 359.97438 * 12 11 10
14 14 N 1.39919 * 120.06967 * 179.97438 * 13 12 11
15 15 C 1.34773 * 120.00136 * 35.08289 * 14 13 12
16 16 O 1.21284 * 120.00267 * 355.37689 * 15 14 13
17 17 C 1.50699 * 120.00186 * 175.37272 * 15 14 13
18 18 C 1.52995 * 109.47470 * 180.02562 * 17 15 14
19 19 C 1.53007 * 109.47297 * 180.02562 * 18 17 15
20 20 H 1.08995 * 110.34792 * 307.14303 * 19 18 17
21 21 C 1.54944 * 110.30912 * 185.00098 * 19 18 17
22 22 C 1.55306 * 100.94297 * 204.63923 * 21 19 18
23 23 H 1.09000 * 110.84414 * 275.94565 * 22 21 19
24 24 C 1.50702 * 110.85013 * 152.32060 * 22 21 19
25 25 O 1.20827 * 119.99803 * 0.02562 * 24 22 21
26 26 O 1.34224 * 119.99809 * 179.97438 * 24 22 21
27 27 C 1.54385 * 102.24958 * 34.13132 * 22 21 19
28 28 O 1.43239 * 107.59005 * 338.64728 * 27 22 21
29 29 C 1.38874 * 119.85601 * 0.24999 * 13 12 11
30 30 C 1.38113 * 119.92878 * 359.52223 * 29 13 12
31 31 H 0.97002 * 119.99415 * 359.97438 * 1 2 3
32 32 H 1.08999 * 109.47114 * 60.00144 * 9 7 2
33 33 H 1.08993 * 109.46914 * 300.00103 * 9 7 2
34 34 H 1.08008 * 119.96567 * 0.02562 * 11 10 9
35 35 H 1.08002 * 120.03991 * 179.97438 * 12 11 10
36 36 H 0.96998 * 120.00148 * 215.07772 * 14 13 12
37 37 H 1.09006 * 109.47064 * 60.00358 * 17 15 14
38 38 H 1.09003 * 109.47582 * 300.00645 * 17 15 14
39 39 H 1.09001 * 109.47520 * 60.00038 * 18 17 15
40 40 H 1.09000 * 109.47170 * 299.99994 * 18 17 15
41 41 H 1.09004 * 111.12492 * 322.55846 * 21 19 18
42 42 H 1.09001 * 111.12458 * 86.71812 * 21 19 18
43 43 H 0.96701 * 116.99933 * 180.02562 * 26 24 22
44 44 H 1.09004 * 109.83111 * 98.16174 * 27 22 21
45 45 H 1.09004 * 109.83148 * 219.13251 * 27 22 21
46 46 H 1.07998 * 120.03175 * 179.74875 * 29 13 12
47 47 H 1.08004 * 119.96410 * 180.23272 * 30 29 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4966 2.0463 -1.4001
5 1 1.4467 2.6527 0.7000
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1941 0.0005
8 1 1.4645 -2.1293 0.0005
9 6 3.5116 -1.1941 0.0011
10 6 4.0139 -2.6149 0.0010
11 6 4.2442 -3.2651 -1.1974
12 6 4.7041 -4.5675 -1.2010
13 6 4.9356 -5.2238 0.0009
14 7 5.4009 -6.5433 0.0008
15 6 6.2576 -6.9557 -0.9544
16 8 6.5600 -6.2092 -1.8612
17 6 6.8400 -8.3444 -0.8958
18 6 7.7746 -8.5563 -2.0885
19 6 8.3654 -9.9665 -2.0293
20 1 8.8216 -10.1457 -1.0557
21 6 9.4105 -10.1595 -3.1567
22 6 9.3761 -11.7025 -3.3296
23 1 10.0264 -12.1889 -2.6024
24 6 9.7539 -12.0933 -4.7352
25 8 10.0305 -11.2409 -5.5456
26 8 9.7841 -13.3885 -5.0865
27 6 7.8942 -12.0308 -3.0476
28 8 7.3468 -10.9451 -2.2904
29 6 4.6987 -4.5695 1.2027
30 6 4.2434 -3.2656 1.1994
31 1 -0.4849 0.8401 0.0004
32 1 3.8745 -0.6801 0.8911
33 1 3.8752 -0.6805 -0.8888
34 1 4.0644 -2.7540 -2.1317
35 1 4.8835 -5.0749 -2.1373
36 1 5.1070 -7.1613 0.6882
37 1 6.0345 -9.0780 -0.9301
38 1 7.4013 -8.4643 0.0309
39 1 8.5801 -7.8228 -2.0538
40 1 7.2137 -8.4364 -3.0154
41 1 9.0994 -9.6547 -4.0714
42 1 10.3971 -9.8216 -2.8399
43 1 10.0326 -13.5901 -5.9990
44 1 7.3532 -12.1356 -3.9881
45 1 7.8228 -12.9548 -2.4737
46 1 4.8739 -5.0786 2.1389
47 1 4.0626 -2.7550 2.1337
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001608183221.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:31:19
Heat of formation + Delta-G solvation = -158.636445 kcal
Electronic energy + Delta-G solvation = -28573.506476 eV
Core-core repulsion = 24299.654858 eV
Total energy + Delta-G solvation = -4273.851618 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.161 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-41.29637 -40.38220 -39.57114 -38.22896 -36.76320 -34.97001 -34.01889 -33.06154
-32.92181 -30.92550 -30.33593 -29.43724 -27.07610 -24.94232 -24.80583 -22.85488
-22.35893 -21.60017 -21.18154 -20.41506 -19.94223 -18.67737 -17.91657 -17.62222
-17.26077 -16.74730 -16.72470 -16.15039 -15.92496 -15.54284 -14.97065 -14.93425
-14.41632 -14.33437 -14.06584 -13.86488 -13.83299 -13.35455 -13.17933 -12.88364
-12.72330 -12.44006 -12.37083 -12.29962 -12.25888 -12.05800 -11.68941 -11.66994
-11.53884 -11.41647 -11.28942 -11.14913 -10.84194 -10.47223 -10.17202 -10.12767
-10.06716 -9.78846 -9.45453 -9.29673 -8.56390 -8.31788 -7.41129 -6.05548
-4.04421 1.51965 1.82885 2.03202 2.28707 2.69353 3.10388 3.19130
3.30785 3.38280 3.41425 3.55945 4.13519 4.21994 4.29447 4.39851
4.43550 4.49721 4.57091 4.68750 4.83663 4.90488 5.03662 5.06102
5.17673 5.22325 5.26396 5.33222 5.41302 5.49385 5.56418 5.68808
5.85377 5.88661 5.91481 6.00872 6.07624 6.14363 6.41534 6.59266
6.75486 6.84688 6.97930 7.06260 7.10115 7.23253 7.49842 7.61144
7.63584 7.73914 8.18387 8.51900 9.00000 9.54964 11.07414
Molecular weight = 347.16amu
Principal moments of inertia in cm(-1)
A = 0.028965 B = 0.001480 C = 0.001453
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 966.440085 B =18918.705477 C =19267.896452
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.900 5.900
2 C 0.069 3.931
3 Si 0.878 3.122
4 H -0.276 1.276
5 H -0.287 1.287
6 H -0.265 1.265
7 C -0.513 4.513
8 H 0.074 0.926
9 C 0.014 3.986
10 C -0.039 4.039
11 C -0.107 4.107
12 C -0.117 4.117
13 C 0.105 3.895
14 N -0.670 5.670
15 C 0.508 3.492
16 O -0.524 6.524
17 C -0.136 4.136
18 C -0.103 4.103
19 C 0.081 3.919
20 H 0.080 0.920
21 C -0.138 4.138
22 C -0.121 4.121
23 H 0.124 0.876
24 C 0.489 3.511
25 O -0.505 6.505
26 O -0.515 6.515
27 C 0.069 3.931
28 O -0.370 6.370
29 C -0.143 4.143
30 C -0.106 4.106
31 H 0.264 0.736
32 H 0.028 0.972
33 H 0.023 0.977
34 H 0.122 0.878
35 H 0.130 0.870
36 H 0.406 0.594
37 H 0.101 0.899
38 H 0.094 0.906
39 H 0.087 0.913
40 H 0.082 0.918
41 H 0.099 0.901
42 H 0.095 0.905
43 H 0.414 0.586
44 H 0.074 0.926
45 H 0.085 0.915
46 H 0.115 0.885
47 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 21.512 -29.201 -2.816 36.379
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.539 5.539
2 C -0.133 4.133
3 Si 0.705 3.295
4 H -0.202 1.202
5 H -0.213 1.213
6 H -0.189 1.189
7 C -0.550 4.550
8 H 0.092 0.908
9 C -0.023 4.023
10 C -0.039 4.039
11 C -0.126 4.126
12 C -0.136 4.136
13 C 0.013 3.987
14 N -0.315 5.315
15 C 0.295 3.705
16 O -0.399 6.399
17 C -0.176 4.176
18 C -0.141 4.141
19 C 0.024 3.976
20 H 0.098 0.902
21 C -0.175 4.175
22 C -0.141 4.141
23 H 0.142 0.858
24 C 0.331 3.669
25 O -0.392 6.392
26 O -0.327 6.327
27 C -0.008 4.008
28 O -0.290 6.290
29 C -0.163 4.163
30 C -0.125 4.125
31 H 0.074 0.926
32 H 0.046 0.954
33 H 0.042 0.958
34 H 0.140 0.860
35 H 0.147 0.853
36 H 0.241 0.759
37 H 0.120 0.880
38 H 0.112 0.888
39 H 0.106 0.894
40 H 0.101 0.899
41 H 0.118 0.882
42 H 0.113 0.887
43 H 0.273 0.727
44 H 0.092 0.908
45 H 0.103 0.897
46 H 0.133 0.867
47 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges 21.361 -28.243 -3.231 35.558
hybrid contribution 0.529 0.297 -0.302 0.678
sum 21.891 -27.946 -3.533 35.674
Atomic orbital electron populations
1.69904 1.06260 1.26936 1.50803 1.24998 0.94732 0.99012 0.94507
0.86804 0.80390 0.83655 0.78662 1.20167 1.21277 1.18921 1.20950
0.88298 0.94657 1.51141 0.90813 1.18806 0.97405 0.88720 0.97356
1.20305 0.93330 0.98099 0.92175 1.20996 0.99100 0.94105 0.98365
1.21133 0.99823 0.95577 0.97111 1.17574 1.02242 0.84569 0.94330
1.43426 1.45827 1.11252 1.30950 1.20820 0.78377 0.89576 0.81693
1.90719 1.59694 1.56011 1.33498 1.21627 1.01075 0.94073 1.00834
1.21501 0.99744 0.93820 0.99037 1.23108 0.87438 0.89387 0.97670
0.90218 1.23359 1.01289 0.91819 1.01051 1.22629 1.00374 0.99162
0.91910 0.85762 1.22967 0.73359 0.80063 0.90534 1.90773 1.44471
1.51291 1.52623 1.84521 1.81883 1.28260 1.38034 1.22981 0.89553
0.91252 0.97025 1.88486 1.34771 1.31794 1.73935 1.20749 1.04452
0.95450 0.95639 1.20846 0.99609 0.93671 0.98376 0.92635 0.95411
0.95832 0.86035 0.85251 0.75887 0.88029 0.88751 0.89403 0.89912
0.88250 0.88663 0.72677 0.90807 0.89721 0.86681 0.85952
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16
2 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16
3 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16
4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16
6 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16
7 C -0.51 -14.68 9.65 -34.44 -0.33 -15.01 16
8 H 0.07 2.31 7.98 -52.49 -0.42 1.89 16
9 C 0.01 0.35 4.17 -29.03 -0.12 0.23 16
10 C -0.04 -0.83 5.07 -104.59 -0.53 -1.36 16
11 C -0.11 -2.17 9.69 -39.61 -0.38 -2.56 16
12 C -0.12 -2.16 8.70 -39.39 -0.34 -2.51 16
13 C 0.11 1.71 6.30 -83.69 -0.53 1.19 16
14 N -0.67 -8.10 5.34 -9.86 -0.05 -8.15 16
15 C 0.51 6.20 7.67 -10.99 -0.08 6.12 16
16 O -0.52 -8.53 13.42 5.55 0.07 -8.45 16
17 C -0.14 -1.04 5.63 -27.89 -0.16 -1.20 16
18 C -0.10 -0.82 4.23 -26.73 -0.11 -0.93 16
19 C 0.08 0.48 3.41 -25.70 -0.09 0.40 16
20 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16
21 C -0.14 -0.78 5.70 -24.48 -0.14 -0.92 16
22 C -0.12 -0.56 3.50 -89.82 -0.31 -0.88 16
23 H 0.12 0.30 8.14 -51.93 -0.42 -0.12 16
24 C 0.49 3.03 7.50 36.01 0.27 3.30 16
25 O -0.50 -4.93 16.45 -18.75 -0.31 -5.23 16
26 O -0.51 -1.98 13.42 -39.24 -0.53 -2.51 16
27 C 0.07 0.36 7.39 37.88 0.28 0.64 16
28 O -0.37 -2.74 10.81 -35.23 -0.38 -3.12 16
29 C -0.14 -2.29 9.97 -39.39 -0.39 -2.68 16
30 C -0.11 -2.02 9.69 -39.61 -0.38 -2.40 16
31 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16
32 H 0.03 0.66 7.14 -51.93 -0.37 0.29 16
33 H 0.02 0.56 7.51 -51.93 -0.39 0.17 16
34 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16
35 H 0.13 2.40 6.22 -52.49 -0.33 2.07 16
36 H 0.41 3.41 8.82 -40.82 -0.36 3.05 16
37 H 0.10 0.70 7.99 -51.93 -0.42 0.28 16
38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16
39 H 0.09 0.71 8.10 -51.93 -0.42 0.29 16
40 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16
41 H 0.10 0.77 7.29 -51.93 -0.38 0.39 16
42 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16
43 H 0.41 0.05 9.10 45.56 0.41 0.47 16
44 H 0.07 0.41 7.81 -51.93 -0.41 0.01 16
45 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16
46 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16
47 H 0.12 2.19 8.06 -52.48 -0.42 1.77 16
LS Contribution 394.63 15.07 5.95 5.95
Total: -1.00 -37.25 394.63 -8.64 -45.89
By element:
Atomic # 1 Polarization: 8.41 SS G_CDS: -6.04 Total: 2.37 kcal
Atomic # 6 Polarization: -13.22 SS G_CDS: -3.46 Total: -16.68 kcal
Atomic # 7 Polarization: -35.84 SS G_CDS: 0.72 Total: -35.12 kcal
Atomic # 8 Polarization: -18.18 SS G_CDS: -1.14 Total: -19.32 kcal
Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal
Total LS contribution 5.95 Total: 5.95 kcal
Total: -37.25 -8.64 -45.89 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001608183221.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -112.742 kcal
(2) G-P(sol) polarization free energy of solvation -37.254 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.995 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.895 kcal
(6) G-S(sol) free energy of system = (1) + (5) -158.636 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds