Wall clock time and date at job start Wed Apr 1 2020 04:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00210 * 2 1 4 4 H 1.48500 * 109.46920 * 270.00139 * 3 2 1 5 5 H 1.48505 * 109.47297 * 29.99923 * 3 2 1 6 6 H 1.48498 * 109.47351 * 149.99890 * 3 2 1 7 7 C 1.37880 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99554 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00048 * 180.02562 * 7 2 1 10 10 C 1.50703 * 109.47030 * 180.02562 * 9 7 2 11 11 C 1.38274 * 119.92965 * 89.99878 * 10 9 7 12 12 C 1.38113 * 120.07254 * 180.02562 * 11 10 9 13 13 C 1.38880 * 119.92708 * 359.97438 * 12 11 10 14 14 N 1.39919 * 120.06967 * 179.97438 * 13 12 11 15 15 C 1.34773 * 120.00136 * 35.08289 * 14 13 12 16 16 O 1.21284 * 120.00267 * 355.37689 * 15 14 13 17 17 C 1.50699 * 120.00186 * 175.37272 * 15 14 13 18 18 C 1.52995 * 109.47470 * 180.02562 * 17 15 14 19 19 C 1.53007 * 109.47297 * 180.02562 * 18 17 15 20 20 H 1.08995 * 110.34792 * 307.14303 * 19 18 17 21 21 C 1.54944 * 110.30912 * 185.00098 * 19 18 17 22 22 C 1.55306 * 100.94297 * 204.63923 * 21 19 18 23 23 H 1.09000 * 110.84414 * 275.94565 * 22 21 19 24 24 C 1.50702 * 110.85013 * 152.32060 * 22 21 19 25 25 O 1.20827 * 119.99803 * 0.02562 * 24 22 21 26 26 O 1.34224 * 119.99809 * 179.97438 * 24 22 21 27 27 C 1.54385 * 102.24958 * 34.13132 * 22 21 19 28 28 O 1.43239 * 107.59005 * 338.64728 * 27 22 21 29 29 C 1.38874 * 119.85601 * 0.24999 * 13 12 11 30 30 C 1.38113 * 119.92878 * 359.52223 * 29 13 12 31 31 H 0.97002 * 119.99415 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.47114 * 60.00144 * 9 7 2 33 33 H 1.08993 * 109.46914 * 300.00103 * 9 7 2 34 34 H 1.08008 * 119.96567 * 0.02562 * 11 10 9 35 35 H 1.08002 * 120.03991 * 179.97438 * 12 11 10 36 36 H 0.96998 * 120.00148 * 215.07772 * 14 13 12 37 37 H 1.09006 * 109.47064 * 60.00358 * 17 15 14 38 38 H 1.09003 * 109.47582 * 300.00645 * 17 15 14 39 39 H 1.09001 * 109.47520 * 60.00038 * 18 17 15 40 40 H 1.09000 * 109.47170 * 299.99994 * 18 17 15 41 41 H 1.09004 * 111.12492 * 322.55846 * 21 19 18 42 42 H 1.09001 * 111.12458 * 86.71812 * 21 19 18 43 43 H 0.96701 * 116.99933 * 180.02562 * 26 24 22 44 44 H 1.09004 * 109.83111 * 98.16174 * 27 22 21 45 45 H 1.09004 * 109.83148 * 219.13251 * 27 22 21 46 46 H 1.07998 * 120.03175 * 179.74875 * 29 13 12 47 47 H 1.08004 * 119.96410 * 180.23272 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0139 -2.6149 0.0010 11 6 4.2442 -3.2651 -1.1974 12 6 4.7041 -4.5675 -1.2010 13 6 4.9356 -5.2238 0.0009 14 7 5.4009 -6.5433 0.0008 15 6 6.2576 -6.9557 -0.9544 16 8 6.5600 -6.2092 -1.8612 17 6 6.8400 -8.3444 -0.8958 18 6 7.7746 -8.5563 -2.0885 19 6 8.3654 -9.9665 -2.0293 20 1 8.8216 -10.1457 -1.0557 21 6 9.4105 -10.1595 -3.1567 22 6 9.3761 -11.7025 -3.3296 23 1 10.0264 -12.1889 -2.6024 24 6 9.7539 -12.0933 -4.7352 25 8 10.0305 -11.2409 -5.5456 26 8 9.7841 -13.3885 -5.0865 27 6 7.8942 -12.0308 -3.0476 28 8 7.3468 -10.9451 -2.2904 29 6 4.6987 -4.5695 1.2027 30 6 4.2434 -3.2656 1.1994 31 1 -0.4849 0.8401 0.0004 32 1 3.8745 -0.6801 0.8911 33 1 3.8752 -0.6805 -0.8888 34 1 4.0644 -2.7540 -2.1317 35 1 4.8835 -5.0749 -2.1373 36 1 5.1070 -7.1613 0.6882 37 1 6.0345 -9.0780 -0.9301 38 1 7.4013 -8.4643 0.0309 39 1 8.5801 -7.8228 -2.0538 40 1 7.2137 -8.4364 -3.0154 41 1 9.0994 -9.6547 -4.0714 42 1 10.3971 -9.8216 -2.8399 43 1 10.0326 -13.5901 -5.9990 44 1 7.3532 -12.1356 -3.9881 45 1 7.8228 -12.9548 -2.4737 46 1 4.8739 -5.0786 2.1389 47 1 4.0626 -2.7550 2.1337 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608183221.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:18 Heat of formation + Delta-G solvation = -185.084995 kcal Electronic energy + Delta-G solvation = -28574.653371 eV Core-core repulsion = 24299.654858 eV Total energy + Delta-G solvation = -4274.998513 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.77512 -41.46466 -40.11037 -39.52975 -37.20613 -36.30321 -34.93744 -34.65131 -33.49679 -32.60136 -31.77798 -30.19991 -28.61308 -25.78361 -25.31781 -24.38433 -23.81303 -22.28316 -21.90346 -21.48172 -21.04505 -19.11774 -18.96748 -18.68590 -18.32554 -18.10728 -17.48828 -16.84762 -16.68761 -16.38504 -16.30536 -15.95106 -15.62968 -15.47710 -15.28940 -14.77284 -14.46438 -14.40350 -14.30492 -14.23983 -14.07982 -13.82956 -13.49799 -13.22792 -13.17428 -12.91463 -12.70365 -12.51783 -12.51217 -12.24365 -12.15366 -11.99073 -11.88341 -11.82035 -11.81758 -11.66287 -11.61378 -11.05324 -10.79024 -10.71362 -10.49847 -9.76752 -8.84168 -8.29742 -6.34729 0.43537 0.56618 1.06362 1.37081 1.37885 1.50366 1.66049 1.94360 2.13827 2.35562 2.77585 2.96714 3.04542 3.15984 3.65128 3.74113 3.83746 3.95079 4.05663 4.12900 4.15159 4.26909 4.31491 4.33337 4.37620 4.56196 4.59934 4.64234 4.70705 4.72344 4.79094 4.81974 4.84603 5.01206 5.05684 5.06872 5.13129 5.27500 5.31342 5.41887 5.45490 5.53243 5.56174 5.63781 5.98770 6.00166 6.16768 6.29377 6.52041 6.71300 6.89107 7.22523 7.28713 8.86715 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.028965 B = 0.001480 C = 0.001453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.440085 B =18918.705477 C =19267.896452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.009 3.991 3 Si 0.950 3.050 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.244 1.244 7 C -0.520 4.520 8 H 0.028 0.972 9 C 0.021 3.979 10 C -0.075 4.075 11 C -0.122 4.122 12 C -0.130 4.130 13 C 0.118 3.882 14 N -0.658 5.658 15 C 0.504 3.496 16 O -0.569 6.569 17 C -0.122 4.122 18 C -0.104 4.104 19 C 0.088 3.912 20 H 0.112 0.888 21 C -0.141 4.141 22 C -0.115 4.115 23 H 0.157 0.843 24 C 0.493 3.507 25 O -0.549 6.549 26 O -0.508 6.508 27 C 0.067 3.933 28 O -0.390 6.390 29 C -0.130 4.130 30 C -0.113 4.113 31 H 0.268 0.732 32 H 0.035 0.965 33 H 0.024 0.976 34 H 0.112 0.888 35 H 0.124 0.876 36 H 0.428 0.572 37 H 0.116 0.884 38 H 0.132 0.868 39 H 0.082 0.918 40 H 0.051 0.949 41 H 0.069 0.931 42 H 0.110 0.890 43 H 0.429 0.571 44 H 0.062 0.938 45 H 0.108 0.892 46 H 0.161 0.839 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.041 -31.382 -0.531 39.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.188 4.188 3 Si 0.773 3.227 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.168 1.168 7 C -0.558 4.558 8 H 0.046 0.954 9 C -0.016 4.016 10 C -0.076 4.076 11 C -0.141 4.141 12 C -0.150 4.150 13 C 0.024 3.976 14 N -0.305 5.305 15 C 0.294 3.706 16 O -0.447 6.447 17 C -0.162 4.162 18 C -0.142 4.142 19 C 0.031 3.969 20 H 0.129 0.871 21 C -0.179 4.179 22 C -0.134 4.134 23 H 0.174 0.826 24 C 0.336 3.664 25 O -0.440 6.440 26 O -0.321 6.321 27 C -0.010 4.010 28 O -0.310 6.310 29 C -0.150 4.150 30 C -0.132 4.132 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.042 0.958 34 H 0.130 0.870 35 H 0.142 0.858 36 H 0.267 0.733 37 H 0.134 0.866 38 H 0.150 0.850 39 H 0.101 0.899 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.128 0.872 43 H 0.291 0.709 44 H 0.080 0.920 45 H 0.126 0.874 46 H 0.179 0.821 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 23.898 -30.503 -0.928 38.761 hybrid contribution -0.272 0.757 -1.079 1.346 sum 23.627 -29.745 -2.007 38.040 Atomic orbital electron populations 1.70059 1.08272 1.28245 1.52336 1.25971 0.95604 1.03328 0.93946 0.85656 0.79615 0.78185 0.79216 1.19404 1.20580 1.16779 1.21178 0.90813 0.93038 1.50785 0.95360 1.18643 0.94313 0.91144 0.97477 1.20186 0.96328 0.97323 0.93770 1.20982 1.00151 0.95127 0.97853 1.21154 1.00505 0.95130 0.98217 1.17694 1.00115 0.86235 0.93540 1.43414 1.45463 1.09893 1.31721 1.21743 0.77524 0.90888 0.80467 1.90715 1.61099 1.57671 1.35237 1.21661 1.01520 0.90720 1.02255 1.21472 0.99415 0.95424 0.97912 1.23130 0.86932 0.87795 0.99024 0.87085 1.23335 1.02008 0.92670 0.99857 1.22693 1.00649 0.98427 0.91623 0.82561 1.23296 0.72140 0.80130 0.90793 1.90765 1.46717 1.52527 1.53976 1.84491 1.81289 1.26900 1.39460 1.23085 0.89544 0.91535 0.96831 1.88453 1.35838 1.32487 1.74195 1.21090 1.02354 0.94226 0.97283 1.21044 0.99447 0.95029 0.97631 0.92358 0.94629 0.95781 0.87034 0.85804 0.73252 0.86567 0.84960 0.89928 0.92976 0.91249 0.87151 0.70870 0.92018 0.87396 0.82147 0.85070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.30 13.96 21.45 0.30 -60.00 16 2 C 0.01 0.51 5.47 84.66 0.46 0.97 16 3 Si 0.95 44.77 27.47 68.60 1.88 46.65 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.24 -10.63 6.54 99.48 0.65 -9.98 16 7 C -0.52 -30.92 9.65 25.60 0.25 -30.68 16 8 H 0.03 1.87 7.98 -2.91 -0.02 1.85 16 9 C 0.02 1.06 4.17 29.10 0.12 1.18 16 10 C -0.08 -3.32 5.07 -19.85 -0.10 -3.42 16 11 C -0.12 -5.17 9.69 22.25 0.22 -4.96 16 12 C -0.13 -4.89 8.70 22.39 0.19 -4.70 16 13 C 0.12 3.64 6.30 38.16 0.24 3.88 16 14 N -0.66 -14.04 5.34 -303.51 -1.62 -15.66 16 15 C 0.50 11.37 7.67 87.66 0.67 12.04 16 16 O -0.57 -18.53 13.42 -3.04 -0.04 -18.57 16 17 C -0.12 -1.49 5.63 29.85 0.17 -1.32 16 18 C -0.10 -1.52 4.23 30.60 0.13 -1.39 16 19 C 0.09 0.83 3.41 31.26 0.11 0.94 16 20 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 21 C -0.14 -1.44 5.70 32.05 0.18 -1.26 16 22 C -0.12 -0.82 3.50 -10.28 -0.04 -0.86 16 23 H 0.16 0.13 8.14 -2.39 -0.02 0.11 16 24 C 0.49 5.62 7.50 71.24 0.53 6.16 16 25 O -0.55 -10.93 16.45 21.96 0.36 -10.57 16 26 O -0.51 -3.07 13.42 -51.36 -0.69 -3.76 16 27 C 0.07 0.56 7.39 72.45 0.54 1.10 16 28 O -0.39 -4.89 10.81 -148.98 -1.61 -6.50 16 29 C -0.13 -3.81 9.97 22.39 0.22 -3.59 16 30 C -0.11 -4.17 9.69 22.25 0.22 -3.96 16 31 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 32 H 0.04 1.68 7.14 -2.39 -0.02 1.66 16 33 H 0.02 1.16 7.51 -2.39 -0.02 1.14 16 34 H 0.11 4.73 8.06 -2.91 -0.02 4.70 16 35 H 0.12 4.76 6.22 -2.91 -0.02 4.75 16 36 H 0.43 5.37 8.82 -92.71 -0.82 4.55 16 37 H 0.12 1.18 7.99 -2.38 -0.02 1.16 16 38 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.08 1.28 8.10 -2.39 -0.02 1.26 16 40 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 41 H 0.07 1.14 7.29 -2.39 -0.02 1.12 16 42 H 0.11 0.75 8.14 -2.39 -0.02 0.74 16 43 H 0.43 -0.44 9.10 -74.06 -0.67 -1.11 16 44 H 0.06 0.64 7.81 -2.38 -0.02 0.63 16 45 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 47 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -86.27 394.63 2.16 -84.11 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -0.54 Total: 14.17 kcal Atomic # 6 Polarization: -33.97 SS G_CDS: 4.11 Total: -29.86 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: -1.32 Total: -75.67 kcal Atomic # 8 Polarization: -37.43 SS G_CDS: -1.98 Total: -39.40 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.65 kcal Total: -86.27 2.16 -84.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183221.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.973 kcal (2) G-P(sol) polarization free energy of solvation -86.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds