Wall clock time and date at job start Wed Apr 1 2020 04:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 119.99956 * 2 1 4 4 H 1.48502 * 109.47171 * 275.70298 * 3 2 1 5 5 H 1.48499 * 109.47389 * 35.70541 * 3 2 1 6 6 H 1.48506 * 109.47021 * 155.70190 * 3 2 1 7 7 C 1.38949 * 119.99757 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00118 * 337.64058 * 7 2 1 9 9 N 1.37101 * 119.99823 * 157.64171 * 7 2 1 10 10 C 1.46501 * 120.00107 * 322.25347 * 9 7 2 11 11 C 1.53000 * 109.46763 * 263.62255 * 10 9 7 12 12 C 1.50701 * 109.46885 * 180.02562 * 11 10 9 13 13 O 1.20827 * 120.00397 * 359.97438 * 12 11 10 14 14 O 1.34231 * 119.99730 * 179.97438 * 12 11 10 15 15 C 1.34777 * 119.99806 * 142.24752 * 9 7 2 16 16 O 1.21295 * 119.99626 * 179.97438 * 15 9 7 17 17 C 1.50693 * 120.00192 * 0.02562 * 15 9 7 18 18 O 1.42900 * 109.47537 * 179.97438 * 17 15 9 19 19 C 1.35897 * 117.00335 * 180.02562 * 18 17 15 20 20 C 1.38759 * 120.17670 * 0.02562 * 19 18 17 21 21 C 1.37831 * 119.71529 * 180.10628 * 20 19 18 22 22 C 1.38956 * 120.62719 * 0.02562 * 21 20 19 23 23 C 1.37711 * 119.76570 * 359.72254 * 22 21 20 24 24 C 1.38425 * 120.17401 * 179.97438 * 19 18 17 25 25 C 1.50637 * 122.55845 * 180.73387 * 23 22 21 26 26 C 1.52725 * 110.59718 * 342.00754 * 25 23 22 27 27 C 1.53315 * 108.39457 * 51.13505 * 26 25 23 28 28 C 1.50646 * 117.70311 * 179.40010 * 22 21 20 29 29 H 0.97009 * 119.99419 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46902 * 23.61840 * 10 9 7 31 31 H 1.09000 * 109.47322 * 143.62294 * 10 9 7 32 32 H 1.09004 * 109.47073 * 299.99480 * 11 10 9 33 33 H 1.09004 * 109.47637 * 59.99807 * 11 10 9 34 34 H 0.96699 * 117.00146 * 179.97438 * 14 12 11 35 35 H 1.09007 * 109.47124 * 59.99595 * 17 15 9 36 36 H 1.09001 * 109.47415 * 299.99467 * 17 15 9 37 37 H 1.07997 * 120.13918 * 0.11810 * 20 19 18 38 38 H 1.08000 * 119.68696 * 179.97438 * 21 20 19 39 39 H 1.08005 * 119.74640 * 0.05838 * 24 19 18 40 40 H 1.09002 * 109.25054 * 102.28692 * 25 23 22 41 41 H 1.08999 * 109.25836 * 221.71701 * 25 23 22 42 42 H 1.08994 * 109.68408 * 170.86320 * 26 25 23 43 43 H 1.09006 * 109.67929 * 291.41383 * 26 25 23 44 44 H 1.08997 * 109.68226 * 49.89369 * 27 26 25 45 45 H 1.09007 * 109.68117 * 170.43768 * 27 26 25 46 46 H 1.08994 * 109.25570 * 282.58263 * 28 22 21 47 47 H 1.08993 * 109.25415 * 42.01030 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.3751 2.1160 -1.3932 5 1 1.5111 2.6149 0.8171 6 1 3.6008 1.4084 0.5761 7 6 2.0088 -1.2034 0.0005 8 1 1.5297 -2.1033 0.3567 9 7 3.3025 -1.2482 -0.4511 10 6 3.7053 -0.4359 -1.6019 11 6 3.6497 -1.2877 -2.8717 12 6 4.0645 -0.4523 -4.0554 13 8 4.3726 0.7056 -3.8995 14 8 4.0919 -0.9946 -5.2829 15 6 4.2038 -2.0395 0.1637 16 8 5.3483 -2.0795 -0.2362 17 6 3.7895 -2.8754 1.3471 18 8 4.9126 -3.6220 1.8196 19 6 4.7078 -4.4334 2.8903 20 6 3.4523 -4.5119 3.4760 21 6 3.2558 -5.3363 4.5629 22 6 4.3033 -6.0897 5.0786 23 6 5.5490 -6.0175 4.4959 24 6 5.7503 -5.1869 3.4018 25 6 6.7241 -6.8182 4.9929 26 6 6.4701 -7.3206 6.4126 27 6 5.1051 -8.0182 6.4420 28 6 4.0183 -6.9579 6.2763 29 1 -0.4850 0.8402 -0.0004 30 1 3.0276 0.4119 -1.7031 31 1 4.7220 -0.0726 -1.4522 32 1 4.3273 -2.1354 -2.7704 33 1 2.6329 -1.6510 -3.0214 34 1 4.3642 -0.4195 -6.0110 35 1 2.9974 -3.5617 1.0477 36 1 3.4252 -2.2245 2.1420 37 1 2.6327 -3.9296 3.0817 38 1 2.2785 -5.3968 5.0186 39 1 6.7282 -5.1269 2.9473 40 1 6.8827 -7.6711 4.3330 41 1 7.6150 -6.1902 4.9880 42 1 7.2496 -8.0273 6.6970 43 1 6.4669 -6.4786 7.1049 44 1 5.0431 -8.7380 5.6259 45 1 4.9754 -8.5311 7.3951 46 1 3.9835 -6.3361 7.1708 47 1 3.0545 -7.4490 6.1431 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608185122.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:00 Heat of formation + Delta-G solvation = -147.400770 kcal Electronic energy + Delta-G solvation = -29993.529920 eV Core-core repulsion = 25720.165518 eV Total energy + Delta-G solvation = -4273.364403 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.33932 -40.04603 -39.13407 -38.01765 -35.99963 -35.37761 -34.98887 -32.55796 -32.42896 -31.19102 -29.66982 -29.12627 -27.35493 -25.18606 -24.28062 -23.71944 -22.34502 -22.17421 -20.91113 -19.58479 -19.11942 -17.99646 -17.59827 -17.27552 -16.43126 -16.31151 -15.87871 -15.74842 -15.53819 -15.35983 -15.05727 -14.58737 -14.43816 -14.04781 -13.98649 -13.82807 -13.33302 -13.23910 -13.00181 -12.81813 -12.75722 -12.59301 -12.53880 -12.19916 -12.10552 -11.91097 -11.50070 -11.33986 -11.19115 -11.09277 -11.06322 -10.91204 -10.57406 -10.41935 -10.37384 -10.33934 -10.29698 -10.03382 -9.40006 -8.77728 -8.65217 -8.08030 -7.82383 -6.68558 -4.32476 1.44024 1.57392 2.46997 2.99746 3.07321 3.16653 3.24851 3.33701 3.54267 3.83683 4.00404 4.43070 4.59268 4.64425 4.73102 4.74882 4.96609 5.04452 5.11601 5.28050 5.30868 5.40883 5.43556 5.43754 5.45500 5.52076 5.64728 5.67903 5.72088 5.78924 5.80110 5.84589 5.85312 5.93457 5.99647 6.00737 6.10996 6.17052 6.22769 6.42820 6.47554 6.57722 6.69117 6.72983 6.94541 7.09229 7.69059 7.82608 7.99926 8.11404 8.72542 9.08697 9.40694 10.40514 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.015149 B = 0.002437 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.835055 B =11486.946493 C =12656.983305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.076 3.924 3 Si 0.866 3.134 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.258 1.258 7 C -0.365 4.365 8 H 0.108 0.892 9 N -0.458 5.458 10 C 0.118 3.882 11 C -0.125 4.125 12 C 0.485 3.515 13 O -0.520 6.520 14 O -0.520 6.520 15 C 0.485 3.515 16 O -0.574 6.574 17 C 0.062 3.938 18 O -0.295 6.295 19 C 0.140 3.860 20 C -0.208 4.208 21 C -0.079 4.079 22 C -0.126 4.126 23 C -0.041 4.041 24 C -0.159 4.159 25 C -0.080 4.080 26 C -0.119 4.119 27 C -0.120 4.120 28 C -0.073 4.073 29 H 0.279 0.721 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.109 0.891 33 H 0.115 0.885 34 H 0.404 0.596 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.134 0.866 38 H 0.121 0.879 39 H 0.128 0.872 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.070 0.930 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.792 -11.699 6.961 14.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.134 4.134 3 Si 0.692 3.308 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.182 1.182 7 C -0.491 4.491 8 H 0.125 0.875 9 N -0.180 5.180 10 C -0.005 4.005 11 C -0.163 4.163 12 C 0.328 3.672 13 O -0.408 6.408 14 O -0.331 6.331 15 C 0.274 3.726 16 O -0.457 6.457 17 C -0.016 4.016 18 O -0.207 6.207 19 C 0.093 3.907 20 C -0.227 4.227 21 C -0.097 4.097 22 C -0.126 4.126 23 C -0.041 4.041 24 C -0.178 4.178 25 C -0.117 4.117 26 C -0.156 4.156 27 C -0.157 4.157 28 C -0.110 4.110 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.127 0.873 33 H 0.133 0.867 34 H 0.262 0.738 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.152 0.848 38 H 0.139 0.861 39 H 0.145 0.855 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.291 -11.502 7.023 14.873 hybrid contribution -0.109 1.516 -0.599 1.634 sum 6.182 -9.986 6.424 13.387 Atomic orbital electron populations 1.69763 1.06325 1.28686 1.43317 1.25321 0.95050 0.98658 0.94378 0.87079 0.81363 0.83375 0.78981 1.19259 1.21003 1.18197 1.19084 0.86127 0.96969 1.46930 0.87485 1.43563 1.09813 1.40064 1.24587 1.21420 1.01772 0.93300 0.84054 1.21766 1.05199 0.99769 0.89611 1.23668 0.73013 0.86713 0.83832 1.90704 1.45353 1.18934 1.85797 1.84577 1.81489 1.48659 1.18378 1.19826 0.84870 0.83661 0.84289 1.90609 1.19132 1.68850 1.67077 1.22365 0.87338 0.94724 0.97175 1.86114 1.36897 1.54504 1.43227 1.18994 0.93609 0.90724 0.87359 1.21349 0.96991 1.04291 1.00073 1.20921 0.98459 0.95080 0.95237 1.19419 0.93050 1.01012 0.99106 1.19292 0.94259 0.96151 0.94368 1.20367 0.98660 0.99909 0.98860 1.20461 0.95685 0.99027 0.96508 1.21537 0.97226 1.00245 0.96621 1.21543 0.94743 0.97689 1.01735 1.20353 0.98874 0.96054 0.95689 0.91103 0.89991 0.90379 0.87270 0.86713 0.73808 0.89596 0.88968 0.84838 0.86057 0.85453 0.90568 0.90677 0.91615 0.91617 0.91669 0.91730 0.91174 0.91199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.89 13.96 55.50 0.77 -21.11 16 2 C 0.08 1.88 5.26 -17.47 -0.09 1.79 16 3 Si 0.87 19.92 25.06 -169.99 -4.26 15.66 16 4 H -0.27 -6.14 6.70 56.52 0.38 -5.76 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.26 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.36 -8.72 9.05 -14.93 -0.14 -8.85 16 8 H 0.11 2.59 7.23 -52.49 -0.38 2.21 16 9 N -0.46 -10.40 2.18 -114.81 -0.25 -10.65 16 10 C 0.12 2.56 3.22 -4.04 -0.01 2.55 16 11 C -0.12 -2.27 6.09 -27.88 -0.17 -2.44 16 12 C 0.49 8.33 8.33 36.01 0.30 8.63 16 13 O -0.52 -10.39 16.74 -18.75 -0.31 -10.71 16 14 O -0.52 -6.92 13.42 -39.26 -0.53 -7.44 16 15 C 0.49 10.94 7.66 -10.99 -0.08 10.85 16 16 O -0.57 -14.25 16.19 -14.36 -0.23 -14.48 16 17 C 0.06 1.19 3.92 36.00 0.14 1.33 16 18 O -0.30 -5.77 9.67 -39.32 -0.38 -6.15 16 19 C 0.14 2.33 6.68 -39.32 -0.26 2.07 16 20 C -0.21 -3.12 9.04 -39.54 -0.36 -3.48 16 21 C -0.08 -1.02 9.60 -39.46 -0.38 -1.40 16 22 C -0.13 -1.53 5.74 -104.57 -0.60 -2.13 16 23 C -0.04 -0.51 5.74 -104.63 -0.60 -1.11 16 24 C -0.16 -2.36 9.55 -39.29 -0.38 -2.74 16 25 C -0.08 -0.77 5.67 -28.05 -0.16 -0.93 16 26 C -0.12 -0.95 5.98 -26.71 -0.16 -1.11 16 27 C -0.12 -0.95 5.98 -26.71 -0.16 -1.11 16 28 C -0.07 -0.67 5.67 -28.05 -0.16 -0.83 16 29 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 30 H 0.08 1.87 3.61 -51.93 -0.19 1.68 16 31 H 0.08 1.76 7.58 -51.93 -0.39 1.36 16 32 H 0.11 1.94 8.14 -51.93 -0.42 1.52 16 33 H 0.11 2.01 8.14 -51.93 -0.42 1.58 16 34 H 0.40 3.41 9.10 45.56 0.41 3.83 16 35 H 0.09 1.53 7.19 -51.93 -0.37 1.15 16 36 H 0.09 1.71 7.63 -51.93 -0.40 1.31 16 37 H 0.13 1.94 6.33 -52.49 -0.33 1.60 16 38 H 0.12 1.30 8.05 -52.49 -0.42 0.88 16 39 H 0.13 1.80 8.05 -52.48 -0.42 1.37 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 44 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 45 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 LS Contribution 385.67 15.07 5.81 5.81 Total: -1.00 -30.93 385.67 -8.51 -39.44 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -5.87 Total: 8.54 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -3.26 Total: 1.09 kcal Atomic # 7 Polarization: -32.29 SS G_CDS: 0.52 Total: -31.77 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: -1.45 Total: -38.78 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.26 Total: 15.66 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.93 -8.51 -39.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185122.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.960 kcal (2) G-P(sol) polarization free energy of solvation -30.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds