Wall clock time and date at job start Wed Apr 1 2020 04:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 119.99956 * 2 1 4 4 H 1.48502 * 109.47171 * 275.70298 * 3 2 1 5 5 H 1.48499 * 109.47389 * 35.70541 * 3 2 1 6 6 H 1.48506 * 109.47021 * 155.70190 * 3 2 1 7 7 C 1.38949 * 119.99757 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00118 * 337.64058 * 7 2 1 9 9 N 1.37101 * 119.99823 * 157.64171 * 7 2 1 10 10 C 1.46501 * 120.00107 * 322.25347 * 9 7 2 11 11 C 1.53000 * 109.46763 * 263.62255 * 10 9 7 12 12 C 1.50701 * 109.46885 * 180.02562 * 11 10 9 13 13 O 1.20827 * 120.00397 * 359.97438 * 12 11 10 14 14 O 1.34231 * 119.99730 * 179.97438 * 12 11 10 15 15 C 1.34777 * 119.99806 * 142.24752 * 9 7 2 16 16 O 1.21295 * 119.99626 * 179.97438 * 15 9 7 17 17 C 1.50693 * 120.00192 * 0.02562 * 15 9 7 18 18 O 1.42900 * 109.47537 * 179.97438 * 17 15 9 19 19 C 1.35897 * 117.00335 * 180.02562 * 18 17 15 20 20 C 1.38759 * 120.17670 * 0.02562 * 19 18 17 21 21 C 1.37831 * 119.71529 * 180.10628 * 20 19 18 22 22 C 1.38956 * 120.62719 * 0.02562 * 21 20 19 23 23 C 1.37711 * 119.76570 * 359.72254 * 22 21 20 24 24 C 1.38425 * 120.17401 * 179.97438 * 19 18 17 25 25 C 1.50637 * 122.55845 * 180.73387 * 23 22 21 26 26 C 1.52725 * 110.59718 * 342.00754 * 25 23 22 27 27 C 1.53315 * 108.39457 * 51.13505 * 26 25 23 28 28 C 1.50646 * 117.70311 * 179.40010 * 22 21 20 29 29 H 0.97009 * 119.99419 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46902 * 23.61840 * 10 9 7 31 31 H 1.09000 * 109.47322 * 143.62294 * 10 9 7 32 32 H 1.09004 * 109.47073 * 299.99480 * 11 10 9 33 33 H 1.09004 * 109.47637 * 59.99807 * 11 10 9 34 34 H 0.96699 * 117.00146 * 179.97438 * 14 12 11 35 35 H 1.09007 * 109.47124 * 59.99595 * 17 15 9 36 36 H 1.09001 * 109.47415 * 299.99467 * 17 15 9 37 37 H 1.07997 * 120.13918 * 0.11810 * 20 19 18 38 38 H 1.08000 * 119.68696 * 179.97438 * 21 20 19 39 39 H 1.08005 * 119.74640 * 0.05838 * 24 19 18 40 40 H 1.09002 * 109.25054 * 102.28692 * 25 23 22 41 41 H 1.08999 * 109.25836 * 221.71701 * 25 23 22 42 42 H 1.08994 * 109.68408 * 170.86320 * 26 25 23 43 43 H 1.09006 * 109.67929 * 291.41383 * 26 25 23 44 44 H 1.08997 * 109.68226 * 49.89369 * 27 26 25 45 45 H 1.09007 * 109.68117 * 170.43768 * 27 26 25 46 46 H 1.08994 * 109.25570 * 282.58263 * 28 22 21 47 47 H 1.08993 * 109.25415 * 42.01030 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.3751 2.1160 -1.3932 5 1 1.5111 2.6149 0.8171 6 1 3.6008 1.4084 0.5761 7 6 2.0088 -1.2034 0.0005 8 1 1.5297 -2.1033 0.3567 9 7 3.3025 -1.2482 -0.4511 10 6 3.7053 -0.4359 -1.6019 11 6 3.6497 -1.2877 -2.8717 12 6 4.0645 -0.4523 -4.0554 13 8 4.3726 0.7056 -3.8995 14 8 4.0919 -0.9946 -5.2829 15 6 4.2038 -2.0395 0.1637 16 8 5.3483 -2.0795 -0.2362 17 6 3.7895 -2.8754 1.3471 18 8 4.9126 -3.6220 1.8196 19 6 4.7078 -4.4334 2.8903 20 6 3.4523 -4.5119 3.4760 21 6 3.2558 -5.3363 4.5629 22 6 4.3033 -6.0897 5.0786 23 6 5.5490 -6.0175 4.4959 24 6 5.7503 -5.1869 3.4018 25 6 6.7241 -6.8182 4.9929 26 6 6.4701 -7.3206 6.4126 27 6 5.1051 -8.0182 6.4420 28 6 4.0183 -6.9579 6.2763 29 1 -0.4850 0.8402 -0.0004 30 1 3.0276 0.4119 -1.7031 31 1 4.7220 -0.0726 -1.4522 32 1 4.3273 -2.1354 -2.7704 33 1 2.6329 -1.6510 -3.0214 34 1 4.3642 -0.4195 -6.0110 35 1 2.9974 -3.5617 1.0477 36 1 3.4252 -2.2245 2.1420 37 1 2.6327 -3.9296 3.0817 38 1 2.2785 -5.3968 5.0186 39 1 6.7282 -5.1269 2.9473 40 1 6.8827 -7.6711 4.3330 41 1 7.6150 -6.1902 4.9880 42 1 7.2496 -8.0273 6.6970 43 1 6.4669 -6.4786 7.1049 44 1 5.0431 -8.7380 5.6259 45 1 4.9754 -8.5311 7.3951 46 1 3.9835 -6.3361 7.1708 47 1 3.0545 -7.4490 6.1431 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608185122.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:59 Heat of formation + Delta-G solvation = -164.298976 kcal Electronic energy + Delta-G solvation = -29994.262681 eV Core-core repulsion = 25720.165518 eV Total energy + Delta-G solvation = -4274.097164 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.63586 -41.35127 -40.64532 -39.30758 -37.35276 -36.96037 -36.11705 -34.30013 -33.47895 -32.83877 -30.65162 -30.28690 -28.65117 -27.03858 -25.84836 -24.57021 -23.30984 -23.16859 -22.29014 -21.16893 -20.30784 -19.41338 -18.98310 -18.74315 -18.06900 -17.81832 -17.19860 -17.09430 -16.82977 -16.75301 -16.41412 -15.78327 -15.68287 -15.43189 -15.28082 -14.83469 -14.65095 -14.56122 -14.38319 -14.25055 -14.12849 -13.76014 -13.66639 -13.56590 -13.37874 -13.02530 -12.98962 -12.81740 -12.63762 -12.61198 -12.16223 -12.08530 -11.88425 -11.75076 -11.71725 -11.54651 -11.30569 -11.26708 -11.20670 -10.61894 -9.95623 -9.70389 -8.96095 -8.62602 -6.25825 0.37244 0.47423 1.09807 1.14558 1.28634 1.37530 1.60075 1.66642 2.10831 2.11958 2.75936 2.79784 2.94756 3.73448 3.74128 3.79532 3.83653 3.90153 4.00806 4.11067 4.17734 4.23375 4.25065 4.28877 4.29637 4.33169 4.51168 4.58859 4.60376 4.63407 4.71833 4.79165 4.81186 4.97573 5.07749 5.09552 5.14444 5.20336 5.24985 5.28446 5.44383 5.50973 5.51084 5.53197 5.73484 5.89959 5.95178 6.09606 6.43969 6.82653 6.92267 7.22159 7.56739 8.49765 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.015149 B = 0.002437 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.835055 B =11486.946493 C =12656.983305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.051 3.949 3 Si 0.902 3.098 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.272 1.272 7 C -0.355 4.355 8 H 0.104 0.896 9 N -0.462 5.462 10 C 0.114 3.886 11 C -0.119 4.119 12 C 0.497 3.503 13 O -0.552 6.552 14 O -0.504 6.504 15 C 0.480 3.520 16 O -0.600 6.600 17 C 0.072 3.928 18 O -0.320 6.320 19 C 0.106 3.894 20 C -0.219 4.219 21 C -0.082 4.082 22 C -0.122 4.122 23 C -0.043 4.043 24 C -0.172 4.172 25 C -0.082 4.082 26 C -0.117 4.117 27 C -0.118 4.118 28 C -0.074 4.074 29 H 0.283 0.717 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.114 0.886 33 H 0.124 0.876 34 H 0.429 0.571 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.132 0.868 38 H 0.146 0.854 39 H 0.125 0.875 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.085 0.915 46 H 0.080 0.920 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.822 -13.442 8.072 16.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.156 4.156 3 Si 0.729 3.271 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.482 4.482 8 H 0.121 0.879 9 N -0.184 5.184 10 C -0.009 4.009 11 C -0.158 4.158 12 C 0.341 3.659 13 O -0.443 6.443 14 O -0.318 6.318 15 C 0.270 3.730 16 O -0.485 6.485 17 C -0.005 4.005 18 O -0.234 6.234 19 C 0.061 3.939 20 C -0.238 4.238 21 C -0.100 4.100 22 C -0.122 4.122 23 C -0.043 4.043 24 C -0.191 4.191 25 C -0.118 4.118 26 C -0.154 4.154 27 C -0.156 4.156 28 C -0.111 4.111 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.132 0.868 33 H 0.142 0.858 34 H 0.291 0.709 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.150 0.850 38 H 0.163 0.837 39 H 0.143 0.857 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.103 0.897 46 H 0.099 0.901 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.314 -13.254 8.111 16.773 hybrid contribution -0.056 1.945 -0.929 2.156 sum 6.259 -11.309 7.183 14.787 Atomic orbital electron populations 1.69782 1.06953 1.29387 1.44870 1.25623 0.95319 1.00072 0.94602 0.86515 0.79939 0.81941 0.78725 1.19434 1.20248 1.19628 1.19071 0.86224 0.96728 1.46152 0.87895 1.43643 1.09507 1.40136 1.25153 1.21380 1.00510 0.93611 0.85439 1.21578 1.06013 0.99293 0.88894 1.23253 0.72263 0.85782 0.84648 1.90703 1.46965 1.20171 1.86469 1.84498 1.80768 1.48729 1.17760 1.20360 0.84406 0.83499 0.84750 1.90580 1.20189 1.69696 1.67994 1.22189 0.87675 0.94751 0.95907 1.86054 1.37029 1.55479 1.44810 1.19286 0.95114 0.91852 0.87682 1.21432 0.96290 1.05098 1.00954 1.21258 0.99933 0.94331 0.94474 1.19884 0.92451 1.00384 0.99516 1.19686 0.95707 0.95524 0.93355 1.20583 0.98288 1.00426 0.99775 1.20557 0.94451 0.98948 0.97876 1.21554 0.98087 1.00624 0.95126 1.21565 0.93970 0.97229 1.02815 1.20459 1.00074 0.96157 0.94383 0.90648 0.91079 0.91728 0.86803 0.85773 0.70883 0.88294 0.88581 0.85002 0.83663 0.85665 0.89698 0.90321 0.89665 0.91816 0.91852 0.89657 0.90131 0.89943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -45.08 13.96 21.66 0.30 -44.77 16 2 C 0.05 2.54 5.26 84.93 0.45 2.99 16 3 Si 0.90 41.26 25.06 68.60 1.72 42.98 16 4 H -0.27 -12.26 6.70 99.48 0.67 -11.60 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 7 C -0.36 -17.05 9.05 84.04 0.76 -16.29 16 8 H 0.10 5.00 7.23 -2.91 -0.02 4.98 16 9 N -0.46 -21.24 2.18 -635.54 -1.39 -22.63 16 10 C 0.11 4.99 3.22 86.38 0.28 5.27 16 11 C -0.12 -4.30 6.09 29.85 0.18 -4.12 16 12 C 0.50 16.54 8.33 71.24 0.59 17.13 16 13 O -0.55 -21.83 16.74 21.96 0.37 -21.46 16 14 O -0.50 -12.26 13.42 -51.43 -0.69 -12.95 16 15 C 0.48 22.08 7.66 87.65 0.67 22.76 16 16 O -0.60 -30.51 16.19 15.96 0.26 -30.25 16 17 C 0.07 2.86 3.92 71.23 0.28 3.14 16 18 O -0.32 -12.95 9.67 -73.36 -0.71 -13.66 16 19 C 0.11 3.62 6.68 22.44 0.15 3.77 16 20 C -0.22 -6.58 9.04 22.30 0.20 -6.38 16 21 C -0.08 -2.01 9.60 22.35 0.21 -1.80 16 22 C -0.12 -2.74 5.74 -19.83 -0.11 -2.85 16 23 C -0.04 -1.03 5.74 -19.87 -0.11 -1.14 16 24 C -0.17 -5.17 9.55 22.46 0.21 -4.95 16 25 C -0.08 -1.41 5.67 29.74 0.17 -1.24 16 26 C -0.12 -1.51 5.98 30.61 0.18 -1.33 16 27 C -0.12 -1.46 5.98 30.61 0.18 -1.28 16 28 C -0.07 -1.13 5.67 29.74 0.17 -0.96 16 29 H 0.28 13.72 8.31 -92.70 -0.77 12.95 16 30 H 0.07 3.27 3.61 -2.39 -0.01 3.26 16 31 H 0.06 2.98 7.58 -2.39 -0.02 2.96 16 32 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 33 H 0.12 4.24 8.14 -2.38 -0.02 4.22 16 34 H 0.43 6.07 9.10 -74.06 -0.67 5.39 16 35 H 0.10 3.58 7.19 -2.38 -0.02 3.56 16 36 H 0.10 3.66 7.63 -2.39 -0.02 3.64 16 37 H 0.13 3.88 6.33 -2.91 -0.02 3.86 16 38 H 0.15 2.78 8.05 -2.91 -0.02 2.76 16 39 H 0.13 3.66 8.05 -2.91 -0.02 3.64 16 40 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.08 1.31 8.12 -2.39 -0.02 1.29 16 42 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.06 0.87 8.10 -2.38 -0.02 0.85 16 44 H 0.06 0.83 8.10 -2.39 -0.02 0.81 16 45 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 46 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.08 1.09 8.12 -2.39 -0.02 1.07 16 Total: -1.00 -66.79 385.67 4.62 -62.17 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: 0.29 Total: 27.86 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 4.47 Total: 12.71 kcal Atomic # 7 Polarization: -66.32 SS G_CDS: -1.09 Total: -67.41 kcal Atomic # 8 Polarization: -77.55 SS G_CDS: -0.77 Total: -78.32 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 1.72 Total: 42.98 kcal Total: -66.79 4.62 -62.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185122.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.124 kcal (2) G-P(sol) polarization free energy of solvation -66.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds