Wall clock time and date at job start Wed Apr 1 2020 05:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86804 * 119.99887 * 2 1 4 4 H 1.48493 * 109.47110 * 269.99873 * 3 2 1 5 5 H 1.48498 * 109.46947 * 30.00492 * 3 2 1 6 6 H 1.48504 * 109.47163 * 149.99663 * 3 2 1 7 7 C 1.38659 * 120.00428 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99647 * 359.97438 * 7 2 1 9 9 O 1.34823 * 120.00028 * 180.02562 * 7 2 1 10 10 C 1.35757 * 116.99720 * 185.05608 * 9 7 2 11 11 C 1.38895 * 120.06993 * 354.46230 * 10 9 7 12 12 C 1.38078 * 119.93151 * 179.97438 * 11 10 9 13 13 C 1.38322 * 120.06802 * 0.02562 * 12 11 10 14 14 C 1.38276 * 120.13965 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.96630 * 180.02562 * 14 13 12 16 16 N 1.46509 * 109.47061 * 89.99845 * 15 14 13 17 17 C 1.34777 * 119.99770 * 180.02562 * 16 15 14 18 18 O 1.21279 * 120.00402 * 359.97438 * 17 16 15 19 19 C 1.50696 * 119.99634 * 179.97438 * 17 16 15 20 20 H 1.08999 * 109.47229 * 59.99789 * 19 17 16 21 21 C 1.52996 * 109.47618 * 299.99718 * 19 17 16 22 22 C 1.52993 * 109.47731 * 180.02562 * 21 19 17 23 23 C 1.53008 * 109.46971 * 59.99696 * 22 21 19 24 24 C 1.52996 * 109.47468 * 300.00472 * 23 22 21 25 25 H 1.09009 * 109.46882 * 299.99779 * 24 23 22 26 26 C 1.50700 * 109.47301 * 179.97438 * 24 23 22 27 27 O 1.20817 * 119.99628 * 239.99616 * 26 24 23 28 28 O 1.34229 * 119.99911 * 59.99825 * 26 24 23 29 29 C 1.53001 * 109.47298 * 59.99594 * 24 23 22 30 30 C 1.38121 * 120.07004 * 0.26853 * 14 13 12 31 31 H 0.96993 * 120.00378 * 359.97438 * 1 2 3 32 32 H 1.07994 * 120.03520 * 359.97438 * 11 10 9 33 33 H 1.07999 * 119.96652 * 179.97438 * 12 11 10 34 34 H 1.08009 * 119.93103 * 180.02562 * 13 12 11 35 35 H 1.08999 * 109.47108 * 329.99729 * 15 14 13 36 36 H 1.08998 * 109.47226 * 209.99515 * 15 14 13 37 37 H 0.96995 * 119.99885 * 359.97438 * 16 15 14 38 38 H 1.08999 * 109.47007 * 59.99905 * 21 19 17 39 39 H 1.08999 * 109.46878 * 300.00286 * 21 19 17 40 40 H 1.08999 * 109.47114 * 300.00070 * 22 21 19 41 41 H 1.08998 * 109.47558 * 179.97438 * 22 21 19 42 42 H 1.09001 * 109.46804 * 179.97438 * 23 22 21 43 43 H 1.08999 * 109.46897 * 60.00240 * 23 22 21 44 44 H 0.96696 * 117.00085 * 179.97438 * 28 26 24 45 45 H 1.08999 * 109.46733 * 59.99792 * 29 24 23 46 46 H 1.08998 * 109.47446 * 180.02562 * 29 24 23 47 47 H 1.07996 * 120.04107 * 179.70734 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0464 -1.4000 5 1 1.4470 2.6526 0.7001 6 1 3.5471 1.4403 0.7001 7 6 2.0089 -1.2008 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3572 -1.2007 0.0000 10 6 3.9735 -2.4055 -0.1072 11 6 3.2235 -3.5745 -0.0952 12 6 3.8533 -4.7983 -0.2050 13 6 5.2298 -4.8610 -0.3262 14 6 5.9793 -3.6990 -0.3384 15 6 7.4787 -3.7718 -0.4712 16 7 7.8458 -3.7333 -1.8890 17 6 9.1430 -3.7867 -2.2509 18 8 10.0064 -3.8662 -1.4029 19 6 9.5205 -3.7477 -3.7093 20 1 9.1614 -2.8190 -4.1528 21 6 8.8858 -4.9371 -4.4325 22 6 9.2696 -4.8979 -5.9130 23 6 10.7920 -4.9725 -6.0474 24 6 11.4268 -3.7830 -5.3242 25 1 11.0679 -2.8543 -5.7681 26 6 12.9262 -3.8569 -5.4560 27 8 13.6164 -3.9329 -4.4673 28 8 13.4947 -3.8382 -6.6718 29 6 11.0429 -3.8223 -3.8436 30 6 5.3557 -2.4719 -0.2240 31 1 -0.4850 0.8400 0.0004 32 1 2.1488 -3.5262 -0.0002 33 1 3.2707 -5.7076 -0.1953 34 1 5.7202 -5.8195 -0.4123 35 1 7.8381 -4.7005 -0.0279 36 1 7.9307 -2.9244 0.0442 37 1 7.1553 -3.6701 -2.5672 38 1 7.8014 -4.8842 -4.3364 39 1 9.2449 -5.8658 -3.9890 40 1 8.9108 -3.9692 -6.3569 41 1 8.8178 -5.7455 -6.4282 42 1 11.0654 -4.9450 -7.1022 43 1 11.1508 -5.9011 -5.6035 44 1 14.4598 -3.8874 -6.7059 45 1 11.4016 -4.7509 -3.3998 46 1 11.4947 -2.9746 -3.3285 47 1 5.9419 -1.5650 -0.2288 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608187228.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:53 Heat of formation + Delta-G solvation = -155.041380 kcal Electronic energy + Delta-G solvation = -29435.811493 eV Core-core repulsion = 25162.115769 eV Total energy + Delta-G solvation = -4273.695724 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.07812 -40.07525 -39.29149 -37.86132 -36.95635 -36.47472 -34.63505 -32.48243 -32.20079 -31.33757 -30.64092 -29.42242 -26.23514 -25.20612 -24.94169 -23.59002 -21.87660 -21.79222 -20.76623 -20.58945 -19.99629 -18.43723 -17.98045 -17.68741 -17.08703 -16.55157 -16.15963 -15.78524 -15.62281 -15.29602 -15.17159 -14.83123 -14.34688 -14.33422 -14.00043 -13.91792 -13.84452 -13.44846 -13.20204 -12.98672 -12.87619 -12.61551 -12.58375 -12.22928 -12.11212 -11.95805 -11.77350 -11.61533 -11.50128 -11.20346 -11.15027 -10.97570 -10.88410 -10.86717 -10.83278 -10.56361 -10.23645 -9.82961 -9.49554 -9.06684 -8.96016 -8.36790 -7.51919 -6.49388 -4.16830 1.77157 1.83002 2.11323 2.57829 2.58939 3.16412 3.20165 3.28306 3.35189 4.13528 4.16867 4.20896 4.30221 4.39574 4.55382 4.62366 4.65459 4.81090 4.87081 4.90204 5.00402 5.01418 5.07938 5.15553 5.20127 5.38658 5.49577 5.53738 5.58130 5.60552 5.71061 5.72170 5.73198 5.83486 5.88133 5.97569 5.99145 6.11366 6.13430 6.38393 6.39883 6.63845 6.96045 7.07492 7.16827 7.43541 7.50630 7.51684 7.69698 7.94200 8.17954 8.85387 9.46208 10.57926 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.015503 B = 0.001977 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.660696 B =14157.754069 C =14761.747194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.391 4.391 8 H 0.107 0.893 9 O -0.215 6.215 10 C 0.156 3.844 11 C -0.212 4.212 12 C -0.077 4.077 13 C -0.187 4.187 14 C -0.075 4.075 15 C 0.167 3.833 16 N -0.720 5.720 17 C 0.516 3.484 18 O -0.541 6.541 19 C -0.106 4.106 20 H 0.101 0.899 21 C -0.115 4.115 22 C -0.116 4.116 23 C -0.112 4.112 24 C -0.079 4.079 25 H 0.111 0.889 26 C 0.481 3.519 27 O -0.509 6.509 28 O -0.518 6.518 29 C -0.084 4.084 30 C -0.172 4.172 31 H 0.280 0.720 32 H 0.134 0.866 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.403 0.597 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.409 0.591 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.725 -9.892 -14.329 26.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.467 4.467 8 H 0.124 0.876 9 O -0.120 6.120 10 C 0.104 3.896 11 C -0.231 4.231 12 C -0.096 4.096 13 C -0.206 4.206 14 C -0.075 4.075 15 C 0.044 3.956 16 N -0.372 5.372 17 C 0.301 3.699 18 O -0.418 6.418 19 C -0.127 4.127 20 H 0.119 0.881 21 C -0.153 4.153 22 C -0.153 4.153 23 C -0.150 4.150 24 C -0.098 4.098 25 H 0.129 0.871 26 C 0.323 3.677 27 O -0.396 6.396 28 O -0.330 6.330 29 C -0.122 4.122 30 C -0.192 4.192 31 H 0.090 0.910 32 H 0.152 0.848 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.238 0.762 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.268 0.732 45 H 0.100 0.900 46 H 0.099 0.901 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 19.982 -9.570 -13.368 25.876 hybrid contribution 0.298 0.730 -0.261 0.830 sum 20.280 -8.841 -13.629 25.984 Atomic orbital electron populations 1.69637 1.05574 1.28616 1.47602 1.24474 0.95035 0.98879 0.95565 0.86182 0.80362 0.81391 0.78987 1.19854 1.20716 1.18338 1.20757 0.76783 0.96653 1.52486 0.87587 1.83577 1.22690 1.25581 1.80163 1.19069 0.91553 0.85646 0.93341 1.21364 1.01311 0.91920 1.08543 1.20807 0.94165 0.96836 0.97750 1.20548 0.93839 0.96746 1.09472 1.19264 0.93392 0.92989 1.01886 1.20154 0.91275 1.02540 0.81607 1.46148 1.07460 1.74673 1.08876 1.20505 0.82432 0.76065 0.90861 1.90720 1.48951 1.49315 1.52808 1.21324 0.97048 1.01409 0.92943 0.88060 1.21601 1.00849 0.97541 0.95335 1.21529 0.94646 1.03112 0.96045 1.21571 0.96005 0.96652 1.00760 1.21100 0.86858 1.02618 0.99231 0.87069 1.23520 0.92207 0.71682 0.80312 1.90760 1.64951 1.44923 1.38958 1.84532 1.29234 1.85479 1.33724 1.21231 0.93322 1.05329 0.92344 1.20082 0.91956 0.97235 1.09915 0.90952 0.84832 0.86973 0.87301 0.90872 0.90881 0.76200 0.90672 0.91012 0.91051 0.90690 0.90313 0.91175 0.73222 0.90033 0.90093 0.86407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.63 13.96 55.48 0.77 -23.86 16 2 C 0.06 1.75 5.49 -17.51 -0.10 1.65 16 3 Si 0.91 21.08 28.62 -169.99 -4.86 16.21 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 6 H -0.26 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.39 -10.62 9.95 30.89 0.31 -10.31 16 8 H 0.11 2.93 5.44 -52.48 -0.29 2.64 16 9 O -0.22 -5.43 8.59 0.05 0.00 -5.43 16 10 C 0.16 3.38 6.65 -39.11 -0.26 3.12 16 11 C -0.21 -4.26 9.17 -39.40 -0.36 -4.62 16 12 C -0.08 -1.28 10.04 -39.61 -0.40 -1.67 16 13 C -0.19 -2.80 9.70 -39.54 -0.38 -3.19 16 14 C -0.07 -1.14 5.25 -104.65 -0.55 -1.69 16 15 C 0.17 2.23 5.80 -5.19 -0.03 2.20 16 16 N -0.72 -8.24 5.44 -61.47 -0.33 -8.57 16 17 C 0.52 6.18 7.15 -10.99 -0.08 6.10 16 18 O -0.54 -8.69 15.98 5.56 0.09 -8.60 16 19 C -0.11 -0.88 2.53 -91.77 -0.23 -1.11 16 20 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 21 C -0.12 -0.74 5.10 -26.74 -0.14 -0.88 16 22 C -0.12 -0.56 5.92 -26.73 -0.16 -0.72 16 23 C -0.11 -0.60 5.14 -26.73 -0.14 -0.74 16 24 C -0.08 -0.54 2.63 -91.77 -0.24 -0.78 16 25 H 0.11 0.58 8.14 -51.92 -0.42 0.16 16 26 C 0.48 4.06 7.63 36.01 0.27 4.34 16 27 O -0.51 -6.23 16.74 -18.74 -0.31 -6.55 16 28 O -0.52 -3.02 13.33 -39.25 -0.52 -3.54 16 29 C -0.08 -0.78 3.06 -26.73 -0.08 -0.86 16 30 C -0.17 -3.15 9.65 -39.39 -0.38 -3.53 16 31 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.13 2.84 5.64 -52.49 -0.30 2.55 16 33 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.11 1.39 8.06 -52.48 -0.42 0.96 16 35 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 36 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 37 H 0.40 3.97 7.88 -40.82 -0.32 3.65 16 38 H 0.07 0.44 7.56 -51.93 -0.39 0.05 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.08 0.36 8.12 -51.93 -0.42 -0.06 16 43 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.41 0.84 9.10 45.56 0.41 1.26 16 45 H 0.08 0.90 8.06 -51.93 -0.42 0.48 16 46 H 0.08 0.89 8.06 -51.93 -0.42 0.48 16 47 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 392.16 15.07 5.91 5.91 Total: -1.00 -33.29 392.16 -8.12 -41.41 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.92 Total: 5.71 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -2.94 Total: -12.69 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.44 Total: -32.43 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.75 Total: -24.12 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.86 Total: 16.21 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.29 -8.12 -41.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608187228.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.627 kcal (2) G-P(sol) polarization free energy of solvation -33.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds