Wall clock time and date at job start Wed Apr 1 2020 05:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86804 * 119.99887 * 2 1 4 4 H 1.48493 * 109.47110 * 269.99873 * 3 2 1 5 5 H 1.48498 * 109.46947 * 30.00492 * 3 2 1 6 6 H 1.48504 * 109.47163 * 149.99663 * 3 2 1 7 7 C 1.38659 * 120.00428 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99647 * 359.97438 * 7 2 1 9 9 O 1.34823 * 120.00028 * 180.02562 * 7 2 1 10 10 C 1.35757 * 116.99720 * 185.05608 * 9 7 2 11 11 C 1.38895 * 120.06993 * 354.46230 * 10 9 7 12 12 C 1.38078 * 119.93151 * 179.97438 * 11 10 9 13 13 C 1.38322 * 120.06802 * 0.02562 * 12 11 10 14 14 C 1.38276 * 120.13965 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.96630 * 180.02562 * 14 13 12 16 16 N 1.46509 * 109.47061 * 89.99845 * 15 14 13 17 17 C 1.34777 * 119.99770 * 180.02562 * 16 15 14 18 18 O 1.21279 * 120.00402 * 359.97438 * 17 16 15 19 19 C 1.50696 * 119.99634 * 179.97438 * 17 16 15 20 20 H 1.08999 * 109.47229 * 59.99789 * 19 17 16 21 21 C 1.52996 * 109.47618 * 299.99718 * 19 17 16 22 22 C 1.52993 * 109.47731 * 180.02562 * 21 19 17 23 23 C 1.53008 * 109.46971 * 59.99696 * 22 21 19 24 24 C 1.52996 * 109.47468 * 300.00472 * 23 22 21 25 25 H 1.09009 * 109.46882 * 299.99779 * 24 23 22 26 26 C 1.50700 * 109.47301 * 179.97438 * 24 23 22 27 27 O 1.20817 * 119.99628 * 239.99616 * 26 24 23 28 28 O 1.34229 * 119.99911 * 59.99825 * 26 24 23 29 29 C 1.53001 * 109.47298 * 59.99594 * 24 23 22 30 30 C 1.38121 * 120.07004 * 0.26853 * 14 13 12 31 31 H 0.96993 * 120.00378 * 359.97438 * 1 2 3 32 32 H 1.07994 * 120.03520 * 359.97438 * 11 10 9 33 33 H 1.07999 * 119.96652 * 179.97438 * 12 11 10 34 34 H 1.08009 * 119.93103 * 180.02562 * 13 12 11 35 35 H 1.08999 * 109.47108 * 329.99729 * 15 14 13 36 36 H 1.08998 * 109.47226 * 209.99515 * 15 14 13 37 37 H 0.96995 * 119.99885 * 359.97438 * 16 15 14 38 38 H 1.08999 * 109.47007 * 59.99905 * 21 19 17 39 39 H 1.08999 * 109.46878 * 300.00286 * 21 19 17 40 40 H 1.08999 * 109.47114 * 300.00070 * 22 21 19 41 41 H 1.08998 * 109.47558 * 179.97438 * 22 21 19 42 42 H 1.09001 * 109.46804 * 179.97438 * 23 22 21 43 43 H 1.08999 * 109.46897 * 60.00240 * 23 22 21 44 44 H 0.96696 * 117.00085 * 179.97438 * 28 26 24 45 45 H 1.08999 * 109.46733 * 59.99792 * 29 24 23 46 46 H 1.08998 * 109.47446 * 180.02562 * 29 24 23 47 47 H 1.07996 * 120.04107 * 179.70734 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0464 -1.4000 5 1 1.4470 2.6526 0.7001 6 1 3.5471 1.4403 0.7001 7 6 2.0089 -1.2008 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3572 -1.2007 0.0000 10 6 3.9735 -2.4055 -0.1072 11 6 3.2235 -3.5745 -0.0952 12 6 3.8533 -4.7983 -0.2050 13 6 5.2298 -4.8610 -0.3262 14 6 5.9793 -3.6990 -0.3384 15 6 7.4787 -3.7718 -0.4712 16 7 7.8458 -3.7333 -1.8890 17 6 9.1430 -3.7867 -2.2509 18 8 10.0064 -3.8662 -1.4029 19 6 9.5205 -3.7477 -3.7093 20 1 9.1614 -2.8190 -4.1528 21 6 8.8858 -4.9371 -4.4325 22 6 9.2696 -4.8979 -5.9130 23 6 10.7920 -4.9725 -6.0474 24 6 11.4268 -3.7830 -5.3242 25 1 11.0679 -2.8543 -5.7681 26 6 12.9262 -3.8569 -5.4560 27 8 13.6164 -3.9329 -4.4673 28 8 13.4947 -3.8382 -6.6718 29 6 11.0429 -3.8223 -3.8436 30 6 5.3557 -2.4719 -0.2240 31 1 -0.4850 0.8400 0.0004 32 1 2.1488 -3.5262 -0.0002 33 1 3.2707 -5.7076 -0.1953 34 1 5.7202 -5.8195 -0.4123 35 1 7.8381 -4.7005 -0.0279 36 1 7.9307 -2.9244 0.0442 37 1 7.1553 -3.6701 -2.5672 38 1 7.8014 -4.8842 -4.3364 39 1 9.2449 -5.8658 -3.9890 40 1 8.9108 -3.9692 -6.3569 41 1 8.8178 -5.7455 -6.4282 42 1 11.0654 -4.9450 -7.1022 43 1 11.1508 -5.9011 -5.6035 44 1 14.4598 -3.8874 -6.7059 45 1 11.4016 -4.7509 -3.3998 46 1 11.4947 -2.9746 -3.3285 47 1 5.9419 -1.5650 -0.2288 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608187228.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:52 Heat of formation + Delta-G solvation = -177.305984 kcal Electronic energy + Delta-G solvation = -29436.776959 eV Core-core repulsion = 25162.115769 eV Total energy + Delta-G solvation = -4274.661190 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.77130 -41.11091 -40.70299 -38.79123 -38.26903 -37.10419 -35.80170 -34.45007 -33.00802 -31.94761 -31.76726 -30.92526 -27.57290 -26.94267 -25.51602 -24.40543 -23.31038 -22.32759 -22.26387 -21.38253 -20.67551 -19.71802 -19.20515 -18.90291 -18.25463 -17.35198 -16.96783 -16.84335 -16.77767 -16.63843 -16.23255 -15.83490 -15.66047 -15.61830 -15.16999 -14.92279 -14.69411 -14.59398 -14.39714 -14.18001 -13.94442 -13.86757 -13.54514 -13.42509 -13.23032 -13.09378 -12.61367 -12.56984 -12.47545 -12.38744 -12.37139 -12.21965 -11.94442 -11.83499 -11.67078 -11.44008 -11.32401 -11.14988 -10.92815 -10.76421 -10.10264 -9.77837 -9.12146 -8.49758 -6.22435 0.35415 0.64906 1.19150 1.32313 1.35174 1.51888 1.64034 2.01618 2.27641 2.33699 2.79148 3.03275 3.12219 3.50742 3.67005 3.74356 3.78267 3.93922 4.05859 4.10152 4.24566 4.27524 4.37210 4.40776 4.41570 4.43323 4.50012 4.61105 4.66571 4.67613 4.74719 4.92903 5.01772 5.06503 5.13571 5.18249 5.19039 5.29001 5.29937 5.36724 5.40800 5.49168 5.62335 5.63230 5.69249 5.75383 5.89360 6.19398 6.56126 6.84731 6.98560 7.24597 7.58595 8.61498 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.015503 B = 0.001977 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.660696 B =14157.754069 C =14761.747194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.011 3.989 3 Si 0.968 3.032 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.265 1.265 7 C -0.397 4.397 8 H 0.084 0.916 9 O -0.245 6.245 10 C 0.119 3.881 11 C -0.227 4.227 12 C -0.073 4.073 13 C -0.158 4.158 14 C -0.059 4.059 15 C 0.172 3.828 16 N -0.712 5.712 17 C 0.514 3.486 18 O -0.586 6.586 19 C -0.097 4.097 20 H 0.126 0.874 21 C -0.113 4.113 22 C -0.110 4.110 23 C -0.108 4.108 24 C -0.075 4.075 25 H 0.136 0.864 26 C 0.485 3.515 27 O -0.557 6.557 28 O -0.508 6.508 29 C -0.080 4.080 30 C -0.170 4.170 31 H 0.284 0.716 32 H 0.110 0.890 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.414 0.586 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.060 0.940 44 H 0.426 0.574 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.365 -11.139 -16.576 29.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.791 3.209 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.190 1.190 7 C -0.474 4.474 8 H 0.101 0.899 9 O -0.153 6.153 10 C 0.070 3.930 11 C -0.247 4.247 12 C -0.091 4.091 13 C -0.177 4.177 14 C -0.060 4.060 15 C 0.049 3.951 16 N -0.364 5.364 17 C 0.302 3.698 18 O -0.466 6.466 19 C -0.118 4.118 20 H 0.144 0.856 21 C -0.150 4.150 22 C -0.148 4.148 23 C -0.145 4.145 24 C -0.094 4.094 25 H 0.154 0.846 26 C 0.329 3.671 27 O -0.447 6.447 28 O -0.322 6.322 29 C -0.118 4.118 30 C -0.190 4.190 31 H 0.094 0.906 32 H 0.128 0.872 33 H 0.162 0.838 34 H 0.166 0.834 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.251 0.749 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.112 0.888 43 H 0.079 0.921 44 H 0.287 0.713 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 21.637 -10.857 -15.667 28.836 hybrid contribution 0.040 0.797 0.403 0.894 sum 21.678 -10.059 -15.263 28.356 Atomic orbital electron populations 1.69718 1.06830 1.29561 1.50093 1.25247 0.95849 1.02057 0.95642 0.85251 0.78723 0.77645 0.79315 1.18892 1.19471 1.18957 1.20694 0.78014 0.96118 1.52534 0.89863 1.83523 1.21283 1.27418 1.83042 1.19580 0.92919 0.85247 0.95228 1.21396 1.00419 0.93260 1.09615 1.21141 0.95196 0.96400 0.96351 1.21024 0.93113 0.98189 1.05394 1.19443 0.94496 0.92009 1.00040 1.20029 0.89384 1.02825 0.82878 1.46027 1.07771 1.74277 1.08282 1.21158 0.81820 0.74683 0.92124 1.90709 1.50144 1.51358 1.54400 1.21344 0.96332 1.03614 0.90523 0.85614 1.21621 1.01262 0.95916 0.96232 1.21529 0.93943 1.04549 0.94744 1.21574 0.96452 0.95320 1.01192 1.21134 0.86005 1.04606 0.97652 0.84643 1.23842 0.92797 0.70301 0.80185 1.90751 1.66095 1.47343 1.40560 1.84492 1.30879 1.84665 1.32118 1.21101 0.93967 1.02849 0.93891 1.20267 0.90567 0.98832 1.09346 0.90601 0.87205 0.83811 0.83350 0.89890 0.91658 0.74915 0.89482 0.92024 0.89494 0.89377 0.88808 0.92094 0.71286 0.92630 0.92639 0.86015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.81 13.96 21.61 0.30 -53.51 16 2 C 0.01 0.60 5.49 84.84 0.47 1.07 16 3 Si 0.97 44.47 28.62 68.60 1.96 46.43 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.40 -22.63 9.95 67.92 0.68 -21.95 16 8 H 0.08 4.94 5.44 -2.91 -0.02 4.93 16 9 O -0.25 -12.80 8.59 -22.74 -0.20 -13.00 16 10 C 0.12 5.23 6.65 22.58 0.15 5.38 16 11 C -0.23 -9.20 9.17 22.39 0.21 -8.99 16 12 C -0.07 -2.21 10.04 22.25 0.22 -1.98 16 13 C -0.16 -4.08 9.70 22.30 0.22 -3.86 16 14 C -0.06 -1.64 5.25 -19.88 -0.10 -1.75 16 15 C 0.17 4.11 5.80 85.63 0.50 4.61 16 16 N -0.71 -14.28 5.44 -466.78 -2.54 -16.82 16 17 C 0.51 11.45 7.15 87.66 0.63 12.08 16 18 O -0.59 -18.61 15.98 -3.03 -0.05 -18.65 16 19 C -0.10 -1.39 2.53 -11.54 -0.03 -1.41 16 20 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 21 C -0.11 -1.09 5.10 30.59 0.16 -0.93 16 22 C -0.11 -0.63 5.92 30.59 0.18 -0.45 16 23 C -0.11 -0.84 5.14 30.60 0.16 -0.68 16 24 C -0.08 -0.87 2.63 -11.54 -0.03 -0.90 16 25 H 0.14 0.95 8.14 -2.38 -0.02 0.93 16 26 C 0.48 7.66 7.63 71.24 0.54 8.21 16 27 O -0.56 -13.86 16.74 21.99 0.37 -13.49 16 28 O -0.51 -4.86 13.33 -51.40 -0.69 -5.54 16 29 C -0.08 -1.43 3.06 30.60 0.09 -1.33 16 30 C -0.17 -6.04 9.65 22.39 0.22 -5.83 16 31 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 32 H 0.11 4.95 5.64 -2.91 -0.02 4.93 16 33 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 34 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 35 H 0.08 1.89 8.08 -2.39 -0.02 1.88 16 36 H 0.07 1.72 8.08 -2.39 -0.02 1.70 16 37 H 0.41 6.65 7.88 -92.71 -0.73 5.92 16 38 H 0.09 0.66 7.56 -2.39 -0.02 0.65 16 39 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.09 0.29 8.14 -2.39 -0.02 0.28 16 41 H 0.09 0.35 8.14 -2.39 -0.02 0.34 16 42 H 0.09 0.51 8.12 -2.39 -0.02 0.49 16 43 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.43 0.99 9.10 -74.06 -0.67 0.31 16 45 H 0.05 1.27 8.06 -2.39 -0.02 1.25 16 46 H 0.05 1.26 8.06 -2.39 -0.02 1.24 16 47 H 0.12 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -77.50 392.16 3.02 -74.48 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -0.39 Total: 18.84 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: 4.24 Total: -18.74 kcal Atomic # 7 Polarization: -68.09 SS G_CDS: -2.24 Total: -70.33 kcal Atomic # 8 Polarization: -50.12 SS G_CDS: -0.56 Total: -50.68 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.96 Total: 46.43 kcal Total: -77.50 3.02 -74.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608187228.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.822 kcal (2) G-P(sol) polarization free energy of solvation -77.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds