Wall clock time and date at job start Wed Apr 1 2020 05:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86801 * 120.00205 * 2 1 4 4 H 1.48496 * 109.47315 * 240.00174 * 3 2 1 5 5 H 1.48505 * 109.47176 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47011 * 119.99930 * 3 2 1 7 7 C 1.38651 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00470 * 180.02562 * 7 2 1 9 9 O 1.34831 * 119.99899 * 359.97438 * 7 2 1 10 10 C 1.35756 * 117.00052 * 185.05947 * 9 7 2 11 11 C 1.38903 * 120.06716 * 354.46631 * 10 9 7 12 12 C 1.38072 * 119.92812 * 179.97438 * 11 10 9 13 13 C 1.38325 * 120.07197 * 0.02626 * 12 11 10 14 14 C 1.38278 * 120.13981 * 359.97438 * 13 12 11 15 15 C 1.50692 * 119.96974 * 179.97438 * 14 13 12 16 16 N 1.46500 * 109.46879 * 90.00564 * 15 14 13 17 17 C 1.34781 * 120.00279 * 179.97438 * 16 15 14 18 18 O 1.21284 * 119.99638 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00018 * 179.97438 * 17 16 15 20 20 H 1.08993 * 109.47279 * 299.99929 * 19 17 16 21 21 C 1.52999 * 109.46845 * 60.00480 * 19 17 16 22 22 C 1.53005 * 109.46655 * 179.97438 * 21 19 17 23 23 C 1.52993 * 109.47384 * 299.99899 * 22 21 19 24 24 C 1.53004 * 109.47073 * 60.00058 * 23 22 21 25 25 H 1.08997 * 109.47036 * 60.00489 * 24 23 22 26 26 C 1.50702 * 109.46917 * 180.02562 * 24 23 22 27 27 O 1.20826 * 119.99837 * 120.00203 * 26 24 23 28 28 O 1.34222 * 120.00169 * 299.99656 * 26 24 23 29 29 C 1.53002 * 109.47149 * 299.99873 * 24 23 22 30 30 C 1.38132 * 120.06380 * 359.97438 * 14 13 12 31 31 H 0.97002 * 119.99818 * 359.97438 * 1 2 3 32 32 H 1.08000 * 120.03681 * 0.02562 * 11 10 9 33 33 H 1.08004 * 119.96821 * 180.30358 * 12 11 10 34 34 H 1.08000 * 119.93171 * 180.02562 * 13 12 11 35 35 H 1.08996 * 109.47680 * 210.00424 * 15 14 13 36 36 H 1.09003 * 109.47559 * 330.01084 * 15 14 13 37 37 H 0.96998 * 120.00279 * 359.97438 * 16 15 14 38 38 H 1.08996 * 109.47056 * 299.99460 * 21 19 17 39 39 H 1.08996 * 109.47376 * 60.00115 * 21 19 17 40 40 H 1.09009 * 109.47092 * 60.00060 * 22 21 19 41 41 H 1.09000 * 109.47076 * 179.97438 * 22 21 19 42 42 H 1.09000 * 109.47384 * 180.02562 * 23 22 21 43 43 H 1.08996 * 109.47378 * 299.99920 * 23 22 21 44 44 H 0.96698 * 117.00541 * 179.97438 * 28 26 24 45 45 H 1.08996 * 109.46971 * 299.99936 * 29 24 23 46 46 H 1.08999 * 109.46906 * 179.97438 * 29 24 23 47 47 H 1.07996 * 120.03081 * 180.02562 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7465 -0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0887 -1.2009 -0.0001 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5047 0.1056 11 6 3.4573 -3.4396 0.0922 12 6 4.2023 -4.5969 0.2009 13 6 3.5685 -5.8204 0.3224 14 6 2.1874 -5.8886 0.3361 15 6 1.5009 -7.2235 0.4681 16 7 1.2854 -7.5237 1.8858 17 6 0.6825 -8.6737 2.2471 18 8 0.3188 -9.4603 1.3986 19 6 0.4613 -8.9826 3.7054 20 1 1.4219 -9.0161 4.2194 21 6 -0.4139 -7.8943 4.3302 22 6 -0.6389 -8.2083 5.8107 23 6 -1.3368 -9.5632 5.9443 24 6 -0.4616 -10.6516 5.3194 25 1 0.4988 -10.6853 5.8338 26 6 -1.1493 -11.9861 5.4505 27 8 -1.4302 -12.6207 4.4614 28 8 -1.4497 -12.4698 6.6660 29 6 -0.2366 -10.3376 3.8390 30 6 1.4365 -4.7342 0.2288 31 1 -0.4850 0.8401 0.0004 32 1 3.9528 -2.4846 -0.0023 33 1 5.2812 -4.5466 0.1954 34 1 4.1534 -6.7243 0.4077 35 1 0.5406 -7.1908 -0.0463 36 1 2.1251 -7.9987 0.0235 37 1 1.5766 -6.8948 2.5644 38 1 0.0831 -6.9290 4.2347 39 1 -1.3745 -7.8609 3.8162 40 1 0.3216 -8.2420 6.3251 41 1 -1.2621 -7.4328 6.2560 42 1 -1.4975 -9.7868 6.9990 43 1 -2.2972 -9.5296 5.4301 44 1 -1.8910 -13.3295 6.6997 45 1 -1.1970 -10.3039 3.3247 46 1 0.3873 -11.1127 3.3939 47 1 0.3580 -4.7880 0.2399 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608187230.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:56 Heat of formation + Delta-G solvation = -180.286390 kcal Electronic energy + Delta-G solvation = -29423.413850 eV Core-core repulsion = 25148.623420 eV Total energy + Delta-G solvation = -4274.790430 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.77324 -41.06142 -40.63333 -38.72584 -38.22770 -37.09941 -35.79756 -34.28106 -33.00049 -31.95579 -31.75613 -30.71491 -27.65725 -26.93513 -25.52752 -24.40665 -23.25173 -22.41583 -22.33056 -21.39009 -20.69143 -19.64345 -19.07268 -18.84824 -18.25464 -17.35861 -16.92173 -16.81064 -16.73480 -16.50256 -16.16247 -16.08392 -15.69886 -15.51033 -15.07452 -14.97535 -14.79902 -14.55253 -14.30255 -13.97722 -13.92426 -13.68396 -13.49343 -13.41694 -13.22510 -13.00077 -12.61074 -12.53192 -12.39991 -12.36912 -12.26374 -12.22910 -12.13524 -11.84719 -11.68373 -11.45758 -11.22085 -11.15832 -10.83928 -10.74328 -10.11747 -9.74432 -9.02834 -8.46024 -6.14624 0.39117 0.71165 1.19461 1.36588 1.46650 1.52501 1.62372 2.01745 2.18209 2.34687 2.85998 3.17990 3.39189 3.49818 3.65977 3.75209 3.82036 3.93135 4.07464 4.10377 4.23605 4.31002 4.36397 4.38975 4.41210 4.42253 4.53477 4.60339 4.64748 4.70552 4.74529 5.00145 5.02228 5.04097 5.11527 5.12471 5.17846 5.26101 5.26966 5.28586 5.38460 5.46870 5.62683 5.62956 5.71164 5.72397 6.02241 6.17076 6.54992 6.98618 6.99054 7.23227 7.78797 8.76676 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.017230 B = 0.001922 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.727532 B =14562.488549 C =15524.947457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.023 4.023 3 Si 1.017 2.983 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.255 1.255 7 C -0.412 4.412 8 H 0.104 0.896 9 O -0.232 6.232 10 C 0.112 3.888 11 C -0.234 4.234 12 C -0.069 4.069 13 C -0.168 4.168 14 C -0.057 4.057 15 C 0.172 3.828 16 N -0.711 5.711 17 C 0.513 3.487 18 O -0.586 6.586 19 C -0.093 4.093 20 H 0.136 0.864 21 C -0.117 4.117 22 C -0.109 4.109 23 C -0.109 4.109 24 C -0.073 4.073 25 H 0.142 0.858 26 C 0.485 3.515 27 O -0.557 6.557 28 O -0.508 6.508 29 C -0.080 4.080 30 C -0.182 4.182 31 H 0.272 0.728 32 H 0.121 0.879 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.414 0.586 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.055 0.945 44 H 0.426 0.574 45 H 0.049 0.951 46 H 0.061 0.939 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.548 -18.677 16.594 25.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.837 3.163 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.179 1.179 7 C -0.488 4.488 8 H 0.121 0.879 9 O -0.139 6.139 10 C 0.062 3.938 11 C -0.253 4.253 12 C -0.087 4.087 13 C -0.187 4.187 14 C -0.058 4.058 15 C 0.049 3.951 16 N -0.363 5.363 17 C 0.301 3.699 18 O -0.467 6.467 19 C -0.114 4.114 20 H 0.153 0.847 21 C -0.155 4.155 22 C -0.146 4.146 23 C -0.146 4.146 24 C -0.092 4.092 25 H 0.160 0.840 26 C 0.329 3.671 27 O -0.448 6.448 28 O -0.321 6.321 29 C -0.118 4.118 30 C -0.202 4.202 31 H 0.081 0.919 32 H 0.139 0.861 33 H 0.167 0.833 34 H 0.166 0.834 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.250 0.750 38 H 0.100 0.900 39 H 0.071 0.929 40 H 0.112 0.888 41 H 0.101 0.899 42 H 0.115 0.885 43 H 0.074 0.926 44 H 0.287 0.713 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.986 -18.852 15.685 24.846 hybrid contribution -0.452 0.554 -0.460 0.850 sum 3.534 -18.298 15.226 24.065 Atomic orbital electron populations 1.70181 1.08035 1.28824 1.48810 1.26581 0.96824 1.02768 0.95929 0.84661 0.77378 0.74317 0.79972 1.18275 1.19918 1.17926 1.21777 0.92544 0.81331 1.53187 0.87883 1.83952 1.35934 1.12572 1.81396 1.19857 0.91668 0.87820 0.94440 1.21375 0.92960 1.00445 1.10551 1.21164 1.00445 0.91100 0.95958 1.20990 0.92994 0.98292 1.06461 1.19424 0.93980 0.92406 0.99985 1.20018 0.99522 0.92681 0.82905 1.46031 1.60577 1.21469 1.08231 1.21219 0.76027 0.80410 0.92269 1.90705 1.52237 1.49328 1.54389 1.21324 1.03039 0.96384 0.90655 0.84675 1.21639 0.99234 0.97362 0.97252 1.21516 1.02610 0.96081 0.94398 1.21571 0.97664 0.93369 1.02020 1.21120 1.01869 0.88351 0.97837 0.84029 1.23831 0.74945 0.88119 0.80199 1.90754 1.52272 1.61210 1.40552 1.84488 1.73098 1.42428 1.32079 1.21107 1.00931 0.95762 0.94040 1.20204 0.99341 0.90181 1.10451 0.91902 0.86128 0.83308 0.83423 0.92314 0.89693 0.74978 0.90006 0.92935 0.88795 0.89940 0.88544 0.92605 0.71280 0.93208 0.92035 0.87606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.55 13.67 21.61 0.30 -55.26 16 2 C -0.02 -1.30 5.49 84.83 0.47 -0.84 16 3 Si 1.02 41.59 29.55 68.60 2.03 43.62 16 4 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 7 C -0.41 -23.21 9.49 67.92 0.64 -22.57 16 8 H 0.10 5.25 5.20 -2.91 -0.02 5.24 16 9 O -0.23 -13.51 9.76 -22.82 -0.22 -13.73 16 10 C 0.11 5.30 6.65 22.58 0.15 5.45 16 11 C -0.23 -9.39 9.17 22.39 0.21 -9.19 16 12 C -0.07 -2.08 10.04 22.25 0.22 -1.86 16 13 C -0.17 -4.61 9.70 22.30 0.22 -4.40 16 14 C -0.06 -1.77 5.25 -19.88 -0.10 -1.87 16 15 C 0.17 4.65 5.80 85.63 0.50 5.15 16 16 N -0.71 -16.23 5.44 -466.79 -2.54 -18.77 16 17 C 0.51 12.56 7.15 87.66 0.63 13.18 16 18 O -0.59 -19.87 15.98 -3.04 -0.05 -19.91 16 19 C -0.09 -1.48 2.53 -11.54 -0.03 -1.51 16 20 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 21 C -0.12 -1.61 5.10 30.60 0.16 -1.46 16 22 C -0.11 -0.93 5.92 30.59 0.18 -0.75 16 23 C -0.11 -1.08 5.14 30.59 0.16 -0.93 16 24 C -0.07 -0.91 2.63 -11.54 -0.03 -0.94 16 25 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 26 C 0.48 8.02 7.63 71.24 0.54 8.57 16 27 O -0.56 -14.34 16.74 21.96 0.37 -13.97 16 28 O -0.51 -5.14 13.33 -51.34 -0.68 -5.82 16 29 C -0.08 -1.53 3.06 30.60 0.09 -1.44 16 30 C -0.18 -7.31 9.65 22.39 0.22 -7.09 16 31 H 0.27 15.11 8.31 -92.71 -0.77 14.33 16 32 H 0.12 4.94 5.64 -2.91 -0.02 4.92 16 33 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 34 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 35 H 0.06 1.79 8.08 -2.39 -0.02 1.77 16 36 H 0.08 2.15 8.09 -2.39 -0.02 2.13 16 37 H 0.41 7.80 7.88 -92.71 -0.73 7.07 16 38 H 0.08 1.06 7.56 -2.39 -0.02 1.04 16 39 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.09 0.44 8.14 -2.38 -0.02 0.42 16 41 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.10 0.68 8.11 -2.39 -0.02 0.66 16 43 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.43 1.22 9.10 -74.06 -0.67 0.55 16 45 H 0.05 1.26 8.06 -2.39 -0.02 1.24 16 46 H 0.06 1.40 8.06 -2.39 -0.02 1.38 16 47 H 0.11 4.41 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -81.83 393.29 3.02 -78.81 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: -0.39 Total: 27.53 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: 4.21 Total: -22.49 kcal Atomic # 7 Polarization: -71.78 SS G_CDS: -2.24 Total: -74.02 kcal Atomic # 8 Polarization: -52.85 SS G_CDS: -0.59 Total: -53.44 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -81.83 3.02 -78.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608187230.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.474 kcal (2) G-P(sol) polarization free energy of solvation -81.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds