Wall clock time and date at job start Wed Apr 1 2020 04:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86803 * 119.99896 * 2 1 4 4 H 1.48494 * 109.47012 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47407 * 300.00766 * 3 2 1 6 6 H 1.48508 * 109.46756 * 60.00512 * 3 2 1 7 7 C 1.39940 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99736 * 163.61517 * 7 2 1 9 9 C 1.41390 * 120.00399 * 343.61139 * 7 2 1 10 10 C 1.40737 * 120.23829 * 334.06645 * 9 7 2 11 11 C 1.37604 * 119.73991 * 180.02562 * 10 9 7 12 12 C 1.38655 * 120.25111 * 359.72343 * 11 10 9 13 13 C 1.38619 * 120.49866 * 0.55480 * 12 11 10 14 14 C 1.37630 * 120.24694 * 359.44683 * 13 12 11 15 15 C 1.50701 * 120.12796 * 180.29070 * 14 13 12 16 16 C 1.50695 * 109.47556 * 265.00188 * 15 14 13 17 17 O 1.21278 * 120.00218 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00256 * 179.97438 * 16 15 14 19 19 C 1.46499 * 120.00005 * 180.02562 * 18 16 15 20 20 H 1.08996 * 109.47205 * 324.99532 * 19 18 16 21 21 C 1.50696 * 109.47150 * 85.00590 * 19 18 16 22 22 O 1.20826 * 120.00287 * 359.97438 * 21 19 18 23 23 O 1.34230 * 119.99870 * 180.02562 * 21 19 18 24 24 C 1.53005 * 109.46656 * 205.00078 * 19 18 16 25 25 C 1.53173 * 109.54598 * 299.81961 * 24 19 18 26 26 C 1.53102 * 109.16152 * 183.24359 * 25 24 19 27 27 O 1.42906 * 109.48586 * 57.47385 * 26 25 24 28 28 C 1.42902 * 114.09736 * 298.89169 * 27 26 25 29 29 C 1.53095 * 109.41304 * 61.15851 * 28 27 26 30 30 H 0.97001 * 120.00439 * 359.97438 * 1 2 3 31 31 H 1.07992 * 120.13035 * 0.02562 * 10 9 7 32 32 H 1.08004 * 119.87351 * 179.97438 * 11 10 9 33 33 H 1.07999 * 119.75156 * 180.30266 * 12 11 10 34 34 H 1.07995 * 119.87111 * 179.71527 * 13 12 11 35 35 H 1.09003 * 109.46679 * 25.00429 * 15 14 13 36 36 H 1.09000 * 109.46936 * 144.99647 * 15 14 13 37 37 H 0.97004 * 119.99486 * 0.02562 * 18 16 15 38 38 H 0.96701 * 116.99860 * 179.97438 * 23 21 19 39 39 H 1.08995 * 109.54467 * 60.00211 * 24 19 18 40 40 H 1.09000 * 109.52689 * 303.06519 * 25 24 19 41 41 H 1.08997 * 109.52254 * 63.24991 * 25 24 19 42 42 H 1.09001 * 109.40509 * 297.49853 * 26 25 24 43 43 H 1.08997 * 109.48661 * 177.50753 * 26 25 24 44 44 H 1.08999 * 109.48319 * 301.17192 * 28 27 26 45 45 H 1.09002 * 109.47744 * 181.13501 * 28 27 26 46 46 H 1.09000 * 109.51897 * 182.48274 * 29 28 27 47 47 H 1.08997 * 109.57571 * 62.33112 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7021 1.3464 -0.0006 5 1 1.8834 2.3966 -1.2123 6 1 1.8835 2.3964 1.2127 7 6 2.0079 -1.2119 -0.0005 8 1 3.0550 -1.2308 -0.2644 9 6 1.3441 -2.4117 0.3444 10 6 0.2135 -2.3806 1.1820 11 6 -0.4243 -3.5545 1.5116 12 6 0.0394 -4.7641 1.0172 13 6 1.1554 -4.8071 0.1960 14 6 1.8091 -3.6455 -0.1467 15 6 3.0182 -3.6947 -1.0449 16 6 4.2682 -3.7243 -0.2036 17 8 4.1854 -3.7076 1.0062 18 7 5.4780 -3.7704 -0.7957 19 6 6.6931 -3.7997 0.0222 20 1 6.5440 -3.1943 0.9162 21 6 6.9952 -5.2209 0.4222 22 8 6.2697 -6.1172 0.0616 23 8 8.0697 -5.4908 1.1801 24 6 7.8648 -3.2371 -0.7850 25 6 8.0788 -4.0893 -2.0397 26 6 9.3023 -3.5683 -2.7984 27 8 10.4440 -3.5979 -1.9394 28 6 10.3186 -2.7804 -0.7740 29 6 9.1372 -3.2711 0.0671 30 1 -0.4851 0.8400 0.0004 31 1 -0.1520 -1.4392 1.5646 32 1 -1.2918 -3.5332 2.1545 33 1 -0.4703 -5.6801 1.2771 34 1 1.5106 -5.7553 -0.1796 35 1 2.9751 -4.5913 -1.6633 36 1 3.0316 -2.8124 -1.6847 37 1 5.5442 -3.7841 -1.7634 38 1 8.2221 -6.4172 1.4115 39 1 7.6476 -2.2092 -1.0750 40 1 8.2453 -5.1271 -1.7512 41 1 7.1979 -4.0247 -2.6784 42 1 9.1182 -2.5442 -3.1230 43 1 9.4858 -4.1983 -3.6687 44 1 10.1478 -1.7460 -1.0722 45 1 11.2343 -2.8429 -0.1859 46 1 9.0127 -2.6220 0.9338 47 1 9.3253 -4.2917 0.4005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608189291.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:37 Heat of formation + Delta-G solvation = -161.712354 kcal Electronic energy + Delta-G solvation = -31343.124197 eV Core-core repulsion = 27069.139198 eV Total energy + Delta-G solvation = -4273.985000 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.06780 -39.25876 -39.05987 -37.36363 -36.17109 -35.68258 -33.60931 -32.95903 -31.66346 -31.40866 -29.44887 -28.65058 -26.50032 -24.95633 -24.35620 -23.87476 -22.09203 -20.91448 -20.58443 -20.08647 -19.37971 -18.14029 -17.27242 -17.00617 -16.85737 -16.32811 -16.04518 -15.81318 -15.58899 -15.26644 -15.01318 -14.48148 -14.47533 -14.17490 -13.87677 -13.52060 -13.49931 -13.19076 -12.99276 -12.66957 -12.56998 -12.36126 -11.79668 -11.72636 -11.67037 -11.56511 -11.18932 -11.15524 -11.06793 -10.98299 -10.95979 -10.67959 -10.61655 -10.53290 -10.38393 -9.85164 -9.46465 -9.38276 -9.29344 -9.15622 -9.02396 -7.28892 -7.27812 -6.72829 -4.33496 2.18740 2.65200 2.79900 2.98470 3.06623 3.10716 3.27570 3.33596 3.55381 3.59658 3.93090 4.20813 4.31321 4.51524 4.67121 4.69481 4.87322 4.99170 5.05010 5.18118 5.25354 5.32780 5.38965 5.39209 5.50240 5.61473 5.71015 5.78814 5.81621 6.02779 6.13143 6.15697 6.32649 6.41469 6.42731 6.51119 6.54356 6.81216 6.89250 7.09463 7.31837 7.44275 7.63980 7.75415 7.85171 7.95584 8.08128 8.15453 8.33113 8.65587 8.74018 8.92684 9.03140 10.21493 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011634 B = 0.003409 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.246519 B = 8212.686543 C = 9841.167193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.077 3.923 3 Si 0.903 3.097 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.457 4.457 8 H 0.074 0.926 9 C 0.129 3.871 10 C -0.160 4.160 11 C -0.107 4.107 12 C -0.239 4.239 13 C -0.080 4.080 14 C -0.182 4.182 15 C -0.068 4.068 16 C 0.523 3.477 17 O -0.515 6.515 18 N -0.725 5.725 19 C 0.164 3.836 20 H 0.126 0.874 21 C 0.467 3.533 22 O -0.501 6.501 23 O -0.512 6.512 24 C -0.091 4.091 25 C -0.158 4.158 26 C 0.064 3.936 27 O -0.384 6.384 28 C 0.063 3.937 29 C -0.164 4.164 30 H 0.279 0.721 31 H 0.117 0.883 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.402 0.598 38 H 0.402 0.598 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.054 0.946 43 H 0.095 0.905 44 H 0.050 0.950 45 H 0.095 0.905 46 H 0.080 0.920 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.211 -3.347 -4.753 19.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.197 1.197 7 C -0.487 4.487 8 H 0.092 0.908 9 C 0.127 3.873 10 C -0.179 4.179 11 C -0.125 4.125 12 C -0.258 4.258 13 C -0.098 4.098 14 C -0.183 4.183 15 C -0.108 4.108 16 C 0.311 3.689 17 O -0.388 6.388 18 N -0.381 5.381 19 C 0.056 3.944 20 H 0.144 0.856 21 C 0.307 3.693 22 O -0.387 6.387 23 O -0.324 6.324 24 C -0.110 4.110 25 C -0.196 4.196 26 C -0.013 4.013 27 O -0.302 6.302 28 C -0.014 4.014 29 C -0.202 4.202 30 H 0.090 0.910 31 H 0.135 0.865 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.237 0.763 38 H 0.262 0.738 39 H 0.115 0.885 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.072 0.928 43 H 0.113 0.887 44 H 0.069 0.931 45 H 0.114 0.886 46 H 0.099 0.901 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 17.786 -3.116 -4.109 18.519 hybrid contribution 0.045 0.206 -0.133 0.249 sum 17.831 -2.910 -4.242 18.558 Atomic orbital electron populations 1.69828 1.07470 1.28933 1.35834 1.25873 0.94683 1.01093 0.92382 0.86356 0.80969 0.81397 0.78545 1.18571 1.20057 1.19743 1.19482 0.97174 0.90956 1.41089 0.90786 1.17336 0.90779 0.91236 0.87965 1.21290 0.99061 0.96640 1.00898 1.20683 0.98662 0.93473 0.99690 1.20315 1.01453 0.96202 1.07845 1.20326 0.95787 0.95625 0.98081 1.19030 0.99259 0.94051 1.06006 1.20251 0.90071 1.02990 0.97462 1.21387 0.84161 0.73767 0.89565 1.90684 1.86514 1.46785 1.14785 1.46003 1.04327 1.78036 1.09761 1.20386 0.86692 0.89612 0.97713 0.85626 1.24188 0.77265 0.93201 0.74645 1.90724 1.47780 1.48015 1.52221 1.84609 1.45890 1.36033 1.65896 1.21441 0.93492 1.00851 0.95265 1.22348 0.99560 1.00426 0.97238 1.22535 0.85246 1.00826 0.92678 1.87937 1.38929 1.68710 1.34658 1.22584 0.98745 0.93610 0.86462 1.22531 0.93575 1.05519 0.98548 0.91033 0.86533 0.89579 0.89657 0.89714 0.90314 0.88355 0.76272 0.73847 0.88477 0.90971 0.90267 0.92795 0.88680 0.93137 0.88646 0.90103 0.87944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.40 10.97 55.55 0.61 -19.79 16 2 C 0.08 1.91 5.16 -17.34 -0.09 1.82 16 3 Si 0.90 18.51 29.59 -169.99 -5.03 13.48 16 4 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.46 -11.88 8.14 -37.75 -0.31 -12.18 16 8 H 0.07 1.85 6.68 -52.48 -0.35 1.50 16 9 C 0.13 3.45 5.56 -106.83 -0.59 2.86 16 10 C -0.16 -4.29 8.69 -38.87 -0.34 -4.63 16 11 C -0.11 -2.64 10.02 -39.66 -0.40 -3.04 16 12 C -0.24 -5.70 10.05 -39.29 -0.39 -6.09 16 13 C -0.08 -1.90 9.66 -39.66 -0.38 -2.29 16 14 C -0.18 -4.42 4.43 -103.92 -0.46 -4.88 16 15 C -0.07 -1.34 5.18 -29.04 -0.15 -1.49 16 16 C 0.52 10.20 7.29 -10.99 -0.08 10.12 16 17 O -0.52 -12.31 15.70 5.56 0.09 -12.23 16 18 N -0.73 -10.43 4.53 -54.94 -0.25 -10.68 16 19 C 0.16 2.10 2.35 -69.08 -0.16 1.93 16 20 H 0.13 1.78 7.58 -51.93 -0.39 1.39 16 21 C 0.47 6.36 6.28 36.00 0.23 6.58 16 22 O -0.50 -8.61 17.08 -18.75 -0.32 -8.93 16 23 O -0.51 -5.12 10.30 -39.26 -0.40 -5.52 16 24 C -0.09 -0.84 2.26 -90.44 -0.20 -1.04 16 25 C -0.16 -1.33 5.00 -26.59 -0.13 -1.47 16 26 C 0.06 0.49 6.84 37.21 0.25 0.75 16 27 O -0.38 -3.65 10.77 -35.23 -0.38 -4.03 16 28 C 0.06 0.48 6.84 37.21 0.25 0.74 16 29 C -0.16 -1.36 5.01 -26.59 -0.13 -1.49 16 30 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 31 H 0.12 3.21 6.22 -52.49 -0.33 2.88 16 32 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 33 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 34 H 0.08 1.82 8.06 -52.49 -0.42 1.40 16 35 H 0.08 1.34 8.05 -51.93 -0.42 0.93 16 36 H 0.10 1.85 7.06 -51.93 -0.37 1.48 16 37 H 0.40 4.53 6.94 -40.82 -0.28 4.25 16 38 H 0.40 2.54 9.10 45.56 0.41 2.96 16 39 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.71 7.12 -51.93 -0.37 0.34 16 41 H 0.08 0.59 6.64 -51.93 -0.34 0.25 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.10 0.92 5.13 -51.93 -0.27 0.66 16 LS Contribution 380.85 15.07 5.74 5.74 Total: -1.00 -34.30 380.85 -8.68 -42.98 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -5.64 Total: 12.77 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -3.09 Total: -13.80 kcal Atomic # 7 Polarization: -30.82 SS G_CDS: 0.36 Total: -30.46 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -1.02 Total: -30.71 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.30 -8.68 -42.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608189291.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.732 kcal (2) G-P(sol) polarization free energy of solvation -34.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds