Wall clock time and date at job start Wed Apr 1 2020 04:35:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30822 * 1
3 3 Si 1.86803 * 119.99896 * 2 1
4 4 H 1.48494 * 109.47012 * 180.02562 * 3 2 1
5 5 H 1.48492 * 109.47407 * 300.00766 * 3 2 1
6 6 H 1.48508 * 109.46756 * 60.00512 * 3 2 1
7 7 C 1.39940 * 119.99912 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99736 * 163.61517 * 7 2 1
9 9 C 1.41390 * 120.00399 * 343.61139 * 7 2 1
10 10 C 1.40737 * 120.23829 * 334.06645 * 9 7 2
11 11 C 1.37604 * 119.73991 * 180.02562 * 10 9 7
12 12 C 1.38655 * 120.25111 * 359.72343 * 11 10 9
13 13 C 1.38619 * 120.49866 * 0.55480 * 12 11 10
14 14 C 1.37630 * 120.24694 * 359.44683 * 13 12 11
15 15 C 1.50701 * 120.12796 * 180.29070 * 14 13 12
16 16 C 1.50695 * 109.47556 * 265.00188 * 15 14 13
17 17 O 1.21278 * 120.00218 * 0.02562 * 16 15 14
18 18 N 1.34774 * 120.00256 * 179.97438 * 16 15 14
19 19 C 1.46499 * 120.00005 * 180.02562 * 18 16 15
20 20 H 1.08996 * 109.47205 * 324.99532 * 19 18 16
21 21 C 1.50696 * 109.47150 * 85.00590 * 19 18 16
22 22 O 1.20826 * 120.00287 * 359.97438 * 21 19 18
23 23 O 1.34230 * 119.99870 * 180.02562 * 21 19 18
24 24 C 1.53005 * 109.46656 * 205.00078 * 19 18 16
25 25 C 1.53173 * 109.54598 * 299.81961 * 24 19 18
26 26 C 1.53102 * 109.16152 * 183.24359 * 25 24 19
27 27 O 1.42906 * 109.48586 * 57.47385 * 26 25 24
28 28 C 1.42902 * 114.09736 * 298.89169 * 27 26 25
29 29 C 1.53095 * 109.41304 * 61.15851 * 28 27 26
30 30 H 0.97001 * 120.00439 * 359.97438 * 1 2 3
31 31 H 1.07992 * 120.13035 * 0.02562 * 10 9 7
32 32 H 1.08004 * 119.87351 * 179.97438 * 11 10 9
33 33 H 1.07999 * 119.75156 * 180.30266 * 12 11 10
34 34 H 1.07995 * 119.87111 * 179.71527 * 13 12 11
35 35 H 1.09003 * 109.46679 * 25.00429 * 15 14 13
36 36 H 1.09000 * 109.46936 * 144.99647 * 15 14 13
37 37 H 0.97004 * 119.99486 * 0.02562 * 18 16 15
38 38 H 0.96701 * 116.99860 * 179.97438 * 23 21 19
39 39 H 1.08995 * 109.54467 * 60.00211 * 24 19 18
40 40 H 1.09000 * 109.52689 * 303.06519 * 25 24 19
41 41 H 1.08997 * 109.52254 * 63.24991 * 25 24 19
42 42 H 1.09001 * 109.40509 * 297.49853 * 26 25 24
43 43 H 1.08997 * 109.48661 * 177.50753 * 26 25 24
44 44 H 1.08999 * 109.48319 * 301.17192 * 28 27 26
45 45 H 1.09002 * 109.47744 * 181.13501 * 28 27 26
46 46 H 1.09000 * 109.51897 * 182.48274 * 29 28 27
47 47 H 1.08997 * 109.57571 * 62.33112 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3082 0.0000 0.0000
3 14 2.2422 1.6178 0.0000
4 1 3.7021 1.3464 -0.0006
5 1 1.8834 2.3966 -1.2123
6 1 1.8835 2.3964 1.2127
7 6 2.0079 -1.2119 -0.0005
8 1 3.0550 -1.2308 -0.2644
9 6 1.3441 -2.4117 0.3444
10 6 0.2135 -2.3806 1.1820
11 6 -0.4243 -3.5545 1.5116
12 6 0.0394 -4.7641 1.0172
13 6 1.1554 -4.8071 0.1960
14 6 1.8091 -3.6455 -0.1467
15 6 3.0182 -3.6947 -1.0449
16 6 4.2682 -3.7243 -0.2036
17 8 4.1854 -3.7076 1.0062
18 7 5.4780 -3.7704 -0.7957
19 6 6.6931 -3.7997 0.0222
20 1 6.5440 -3.1943 0.9162
21 6 6.9952 -5.2209 0.4222
22 8 6.2697 -6.1172 0.0616
23 8 8.0697 -5.4908 1.1801
24 6 7.8648 -3.2371 -0.7850
25 6 8.0788 -4.0893 -2.0397
26 6 9.3023 -3.5683 -2.7984
27 8 10.4440 -3.5979 -1.9394
28 6 10.3186 -2.7804 -0.7740
29 6 9.1372 -3.2711 0.0671
30 1 -0.4851 0.8400 0.0004
31 1 -0.1520 -1.4392 1.5646
32 1 -1.2918 -3.5332 2.1545
33 1 -0.4703 -5.6801 1.2771
34 1 1.5106 -5.7553 -0.1796
35 1 2.9751 -4.5913 -1.6633
36 1 3.0316 -2.8124 -1.6847
37 1 5.5442 -3.7841 -1.7634
38 1 8.2221 -6.4172 1.4115
39 1 7.6476 -2.2092 -1.0750
40 1 8.2453 -5.1271 -1.7512
41 1 7.1979 -4.0247 -2.6784
42 1 9.1182 -2.5442 -3.1230
43 1 9.4858 -4.1983 -3.6687
44 1 10.1478 -1.7460 -1.0722
45 1 11.2343 -2.8429 -0.1859
46 1 9.0127 -2.6220 0.9338
47 1 9.3253 -4.2917 0.4005
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001608189291.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:35:37
Heat of formation + Delta-G solvation = -161.712354 kcal
Electronic energy + Delta-G solvation = -31343.124197 eV
Core-core repulsion = 27069.139198 eV
Total energy + Delta-G solvation = -4273.985000 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.161 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-41.06780 -39.25876 -39.05987 -37.36363 -36.17109 -35.68258 -33.60931 -32.95903
-31.66346 -31.40866 -29.44887 -28.65058 -26.50032 -24.95633 -24.35620 -23.87476
-22.09203 -20.91448 -20.58443 -20.08647 -19.37971 -18.14029 -17.27242 -17.00617
-16.85737 -16.32811 -16.04518 -15.81318 -15.58899 -15.26644 -15.01318 -14.48148
-14.47533 -14.17490 -13.87677 -13.52060 -13.49931 -13.19076 -12.99276 -12.66957
-12.56998 -12.36126 -11.79668 -11.72636 -11.67037 -11.56511 -11.18932 -11.15524
-11.06793 -10.98299 -10.95979 -10.67959 -10.61655 -10.53290 -10.38393 -9.85164
-9.46465 -9.38276 -9.29344 -9.15622 -9.02396 -7.28892 -7.27812 -6.72829
-4.33496 2.18740 2.65200 2.79900 2.98470 3.06623 3.10716 3.27570
3.33596 3.55381 3.59658 3.93090 4.20813 4.31321 4.51524 4.67121
4.69481 4.87322 4.99170 5.05010 5.18118 5.25354 5.32780 5.38965
5.39209 5.50240 5.61473 5.71015 5.78814 5.81621 6.02779 6.13143
6.15697 6.32649 6.41469 6.42731 6.51119 6.54356 6.81216 6.89250
7.09463 7.31837 7.44275 7.63980 7.75415 7.85171 7.95584 8.08128
8.15453 8.33113 8.65587 8.74018 8.92684 9.03140 10.21493
Molecular weight = 347.16amu
Principal moments of inertia in cm(-1)
A = 0.011634 B = 0.003409 C = 0.002845
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2406.246519 B = 8212.686543 C = 9841.167193
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.795 5.795
2 C 0.077 3.923
3 Si 0.903 3.097
4 H -0.262 1.262
5 H -0.275 1.275
6 H -0.272 1.272
7 C -0.457 4.457
8 H 0.074 0.926
9 C 0.129 3.871
10 C -0.160 4.160
11 C -0.107 4.107
12 C -0.239 4.239
13 C -0.080 4.080
14 C -0.182 4.182
15 C -0.068 4.068
16 C 0.523 3.477
17 O -0.515 6.515
18 N -0.725 5.725
19 C 0.164 3.836
20 H 0.126 0.874
21 C 0.467 3.533
22 O -0.501 6.501
23 O -0.512 6.512
24 C -0.091 4.091
25 C -0.158 4.158
26 C 0.064 3.936
27 O -0.384 6.384
28 C 0.063 3.937
29 C -0.164 4.164
30 H 0.279 0.721
31 H 0.117 0.883
32 H 0.086 0.914
33 H 0.085 0.915
34 H 0.085 0.915
35 H 0.079 0.921
36 H 0.098 0.902
37 H 0.402 0.598
38 H 0.402 0.598
39 H 0.097 0.903
40 H 0.072 0.928
41 H 0.079 0.921
42 H 0.054 0.946
43 H 0.095 0.905
44 H 0.050 0.950
45 H 0.095 0.905
46 H 0.080 0.920
47 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.211 -3.347 -4.753 19.116
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.421 5.421
2 C -0.140 4.140
3 Si 0.727 3.273
4 H -0.186 1.186
5 H -0.201 1.201
6 H -0.197 1.197
7 C -0.487 4.487
8 H 0.092 0.908
9 C 0.127 3.873
10 C -0.179 4.179
11 C -0.125 4.125
12 C -0.258 4.258
13 C -0.098 4.098
14 C -0.183 4.183
15 C -0.108 4.108
16 C 0.311 3.689
17 O -0.388 6.388
18 N -0.381 5.381
19 C 0.056 3.944
20 H 0.144 0.856
21 C 0.307 3.693
22 O -0.387 6.387
23 O -0.324 6.324
24 C -0.110 4.110
25 C -0.196 4.196
26 C -0.013 4.013
27 O -0.302 6.302
28 C -0.014 4.014
29 C -0.202 4.202
30 H 0.090 0.910
31 H 0.135 0.865
32 H 0.104 0.896
33 H 0.103 0.897
34 H 0.103 0.897
35 H 0.097 0.903
36 H 0.116 0.884
37 H 0.237 0.763
38 H 0.262 0.738
39 H 0.115 0.885
40 H 0.090 0.910
41 H 0.097 0.903
42 H 0.072 0.928
43 H 0.113 0.887
44 H 0.069 0.931
45 H 0.114 0.886
46 H 0.099 0.901
47 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges 17.786 -3.116 -4.109 18.519
hybrid contribution 0.045 0.206 -0.133 0.249
sum 17.831 -2.910 -4.242 18.558
Atomic orbital electron populations
1.69828 1.07470 1.28933 1.35834 1.25873 0.94683 1.01093 0.92382
0.86356 0.80969 0.81397 0.78545 1.18571 1.20057 1.19743 1.19482
0.97174 0.90956 1.41089 0.90786 1.17336 0.90779 0.91236 0.87965
1.21290 0.99061 0.96640 1.00898 1.20683 0.98662 0.93473 0.99690
1.20315 1.01453 0.96202 1.07845 1.20326 0.95787 0.95625 0.98081
1.19030 0.99259 0.94051 1.06006 1.20251 0.90071 1.02990 0.97462
1.21387 0.84161 0.73767 0.89565 1.90684 1.86514 1.46785 1.14785
1.46003 1.04327 1.78036 1.09761 1.20386 0.86692 0.89612 0.97713
0.85626 1.24188 0.77265 0.93201 0.74645 1.90724 1.47780 1.48015
1.52221 1.84609 1.45890 1.36033 1.65896 1.21441 0.93492 1.00851
0.95265 1.22348 0.99560 1.00426 0.97238 1.22535 0.85246 1.00826
0.92678 1.87937 1.38929 1.68710 1.34658 1.22584 0.98745 0.93610
0.86462 1.22531 0.93575 1.05519 0.98548 0.91033 0.86533 0.89579
0.89657 0.89714 0.90314 0.88355 0.76272 0.73847 0.88477 0.90971
0.90267 0.92795 0.88680 0.93137 0.88646 0.90103 0.87944
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.79 -20.40 10.97 55.55 0.61 -19.79 16
2 C 0.08 1.91 5.16 -17.34 -0.09 1.82 16
3 Si 0.90 18.51 29.59 -169.99 -5.03 13.48 16
4 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16
5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16
6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16
7 C -0.46 -11.88 8.14 -37.75 -0.31 -12.18 16
8 H 0.07 1.85 6.68 -52.48 -0.35 1.50 16
9 C 0.13 3.45 5.56 -106.83 -0.59 2.86 16
10 C -0.16 -4.29 8.69 -38.87 -0.34 -4.63 16
11 C -0.11 -2.64 10.02 -39.66 -0.40 -3.04 16
12 C -0.24 -5.70 10.05 -39.29 -0.39 -6.09 16
13 C -0.08 -1.90 9.66 -39.66 -0.38 -2.29 16
14 C -0.18 -4.42 4.43 -103.92 -0.46 -4.88 16
15 C -0.07 -1.34 5.18 -29.04 -0.15 -1.49 16
16 C 0.52 10.20 7.29 -10.99 -0.08 10.12 16
17 O -0.52 -12.31 15.70 5.56 0.09 -12.23 16
18 N -0.73 -10.43 4.53 -54.94 -0.25 -10.68 16
19 C 0.16 2.10 2.35 -69.08 -0.16 1.93 16
20 H 0.13 1.78 7.58 -51.93 -0.39 1.39 16
21 C 0.47 6.36 6.28 36.00 0.23 6.58 16
22 O -0.50 -8.61 17.08 -18.75 -0.32 -8.93 16
23 O -0.51 -5.12 10.30 -39.26 -0.40 -5.52 16
24 C -0.09 -0.84 2.26 -90.44 -0.20 -1.04 16
25 C -0.16 -1.33 5.00 -26.59 -0.13 -1.47 16
26 C 0.06 0.49 6.84 37.21 0.25 0.75 16
27 O -0.38 -3.65 10.77 -35.23 -0.38 -4.03 16
28 C 0.06 0.48 6.84 37.21 0.25 0.74 16
29 C -0.16 -1.36 5.01 -26.59 -0.13 -1.49 16
30 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16
31 H 0.12 3.21 6.22 -52.49 -0.33 2.88 16
32 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16
33 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16
34 H 0.08 1.82 8.06 -52.49 -0.42 1.40 16
35 H 0.08 1.34 8.05 -51.93 -0.42 0.93 16
36 H 0.10 1.85 7.06 -51.93 -0.37 1.48 16
37 H 0.40 4.53 6.94 -40.82 -0.28 4.25 16
38 H 0.40 2.54 9.10 45.56 0.41 2.96 16
39 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16
40 H 0.07 0.71 7.12 -51.93 -0.37 0.34 16
41 H 0.08 0.59 6.64 -51.93 -0.34 0.25 16
42 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16
43 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16
44 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16
45 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16
46 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16
47 H 0.10 0.92 5.13 -51.93 -0.27 0.66 16
LS Contribution 380.85 15.07 5.74 5.74
Total: -1.00 -34.30 380.85 -8.68 -42.98
By element:
Atomic # 1 Polarization: 18.42 SS G_CDS: -5.64 Total: 12.77 kcal
Atomic # 6 Polarization: -10.71 SS G_CDS: -3.09 Total: -13.80 kcal
Atomic # 7 Polarization: -30.82 SS G_CDS: 0.36 Total: -30.46 kcal
Atomic # 8 Polarization: -29.69 SS G_CDS: -1.02 Total: -30.71 kcal
Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal
Total LS contribution 5.74 Total: 5.74 kcal
Total: -34.30 -8.68 -42.98 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001608189291.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -118.732 kcal
(2) G-P(sol) polarization free energy of solvation -34.297 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.029 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.980 kcal
(6) G-S(sol) free energy of system = (1) + (5) -161.712 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds