Wall clock time and date at job start Wed Apr 1 2020 04:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86803 * 119.99896 * 2 1 4 4 H 1.48494 * 109.47012 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47407 * 300.00766 * 3 2 1 6 6 H 1.48508 * 109.46756 * 60.00512 * 3 2 1 7 7 C 1.39940 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99736 * 163.61517 * 7 2 1 9 9 C 1.41390 * 120.00399 * 343.61139 * 7 2 1 10 10 C 1.40737 * 120.23829 * 334.06645 * 9 7 2 11 11 C 1.37604 * 119.73991 * 180.02562 * 10 9 7 12 12 C 1.38655 * 120.25111 * 359.72343 * 11 10 9 13 13 C 1.38619 * 120.49866 * 0.55480 * 12 11 10 14 14 C 1.37630 * 120.24694 * 359.44683 * 13 12 11 15 15 C 1.50701 * 120.12796 * 180.29070 * 14 13 12 16 16 C 1.50695 * 109.47556 * 265.00188 * 15 14 13 17 17 O 1.21278 * 120.00218 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00256 * 179.97438 * 16 15 14 19 19 C 1.46499 * 120.00005 * 180.02562 * 18 16 15 20 20 H 1.08996 * 109.47205 * 324.99532 * 19 18 16 21 21 C 1.50696 * 109.47150 * 85.00590 * 19 18 16 22 22 O 1.20826 * 120.00287 * 359.97438 * 21 19 18 23 23 O 1.34230 * 119.99870 * 180.02562 * 21 19 18 24 24 C 1.53005 * 109.46656 * 205.00078 * 19 18 16 25 25 C 1.53173 * 109.54598 * 299.81961 * 24 19 18 26 26 C 1.53102 * 109.16152 * 183.24359 * 25 24 19 27 27 O 1.42906 * 109.48586 * 57.47385 * 26 25 24 28 28 C 1.42902 * 114.09736 * 298.89169 * 27 26 25 29 29 C 1.53095 * 109.41304 * 61.15851 * 28 27 26 30 30 H 0.97001 * 120.00439 * 359.97438 * 1 2 3 31 31 H 1.07992 * 120.13035 * 0.02562 * 10 9 7 32 32 H 1.08004 * 119.87351 * 179.97438 * 11 10 9 33 33 H 1.07999 * 119.75156 * 180.30266 * 12 11 10 34 34 H 1.07995 * 119.87111 * 179.71527 * 13 12 11 35 35 H 1.09003 * 109.46679 * 25.00429 * 15 14 13 36 36 H 1.09000 * 109.46936 * 144.99647 * 15 14 13 37 37 H 0.97004 * 119.99486 * 0.02562 * 18 16 15 38 38 H 0.96701 * 116.99860 * 179.97438 * 23 21 19 39 39 H 1.08995 * 109.54467 * 60.00211 * 24 19 18 40 40 H 1.09000 * 109.52689 * 303.06519 * 25 24 19 41 41 H 1.08997 * 109.52254 * 63.24991 * 25 24 19 42 42 H 1.09001 * 109.40509 * 297.49853 * 26 25 24 43 43 H 1.08997 * 109.48661 * 177.50753 * 26 25 24 44 44 H 1.08999 * 109.48319 * 301.17192 * 28 27 26 45 45 H 1.09002 * 109.47744 * 181.13501 * 28 27 26 46 46 H 1.09000 * 109.51897 * 182.48274 * 29 28 27 47 47 H 1.08997 * 109.57571 * 62.33112 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7021 1.3464 -0.0006 5 1 1.8834 2.3966 -1.2123 6 1 1.8835 2.3964 1.2127 7 6 2.0079 -1.2119 -0.0005 8 1 3.0550 -1.2308 -0.2644 9 6 1.3441 -2.4117 0.3444 10 6 0.2135 -2.3806 1.1820 11 6 -0.4243 -3.5545 1.5116 12 6 0.0394 -4.7641 1.0172 13 6 1.1554 -4.8071 0.1960 14 6 1.8091 -3.6455 -0.1467 15 6 3.0182 -3.6947 -1.0449 16 6 4.2682 -3.7243 -0.2036 17 8 4.1854 -3.7076 1.0062 18 7 5.4780 -3.7704 -0.7957 19 6 6.6931 -3.7997 0.0222 20 1 6.5440 -3.1943 0.9162 21 6 6.9952 -5.2209 0.4222 22 8 6.2697 -6.1172 0.0616 23 8 8.0697 -5.4908 1.1801 24 6 7.8648 -3.2371 -0.7850 25 6 8.0788 -4.0893 -2.0397 26 6 9.3023 -3.5683 -2.7984 27 8 10.4440 -3.5979 -1.9394 28 6 10.3186 -2.7804 -0.7740 29 6 9.1372 -3.2711 0.0671 30 1 -0.4851 0.8400 0.0004 31 1 -0.1520 -1.4392 1.5646 32 1 -1.2918 -3.5332 2.1545 33 1 -0.4703 -5.6801 1.2771 34 1 1.5106 -5.7553 -0.1796 35 1 2.9751 -4.5913 -1.6633 36 1 3.0316 -2.8124 -1.6847 37 1 5.5442 -3.7841 -1.7634 38 1 8.2221 -6.4172 1.4115 39 1 7.6476 -2.2092 -1.0750 40 1 8.2453 -5.1271 -1.7512 41 1 7.1979 -4.0247 -2.6784 42 1 9.1182 -2.5442 -3.1230 43 1 9.4858 -4.1983 -3.6687 44 1 10.1478 -1.7460 -1.0722 45 1 11.2343 -2.8429 -0.1859 46 1 9.0127 -2.6220 0.9338 47 1 9.3253 -4.2917 0.4005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608189291.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:36 Heat of formation + Delta-G solvation = -184.751006 kcal Electronic energy + Delta-G solvation = -31344.123228 eV Core-core repulsion = 27069.139198 eV Total energy + Delta-G solvation = -4274.984030 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.10764 -40.54341 -40.01496 -39.11232 -37.23097 -36.72831 -35.49246 -34.12532 -33.32209 -32.02326 -31.35227 -29.84618 -28.08464 -26.79018 -25.15008 -24.55739 -23.18815 -22.81363 -21.93631 -21.07352 -20.89953 -19.15885 -19.07900 -18.31252 -17.86744 -17.41904 -17.10798 -16.92232 -16.82475 -16.41555 -16.20976 -16.01932 -15.62594 -15.40481 -15.07541 -14.94637 -14.72974 -14.45048 -14.37570 -14.24713 -13.58825 -13.37023 -13.31036 -13.13511 -12.90570 -12.76131 -12.72118 -12.66959 -12.49945 -12.41940 -12.09090 -11.91973 -11.76258 -11.62492 -11.33254 -11.22353 -11.18030 -11.02213 -10.90113 -10.51870 -10.29479 -9.23550 -9.17644 -8.58263 -6.28489 0.98276 1.11075 1.12215 1.38633 1.51937 1.54327 1.54450 1.96243 2.21766 2.37774 2.79532 3.01837 3.37423 3.58375 3.72083 3.83666 4.06140 4.07290 4.12071 4.23789 4.33850 4.38708 4.42059 4.49351 4.59564 4.62902 4.66215 4.69620 4.77059 4.79068 4.84595 4.89945 5.04197 5.08716 5.15267 5.20817 5.28174 5.36585 5.47508 5.53253 5.54442 5.77079 6.03561 6.15943 6.20798 6.31201 6.41682 6.49157 6.73749 6.90500 6.99845 7.11137 7.30315 8.38692 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011634 B = 0.003409 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.246519 B = 8212.686543 C = 9841.167193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.036 3.964 3 Si 0.974 3.026 4 H -0.256 1.256 5 H -0.262 1.262 6 H -0.272 1.272 7 C -0.481 4.481 8 H 0.076 0.924 9 C 0.099 3.901 10 C -0.194 4.194 11 C -0.116 4.116 12 C -0.245 4.245 13 C -0.094 4.094 14 C -0.188 4.188 15 C -0.068 4.068 16 C 0.525 3.475 17 O -0.567 6.567 18 N -0.706 5.706 19 C 0.160 3.840 20 H 0.112 0.888 21 C 0.472 3.528 22 O -0.542 6.542 23 O -0.499 6.499 24 C -0.083 4.083 25 C -0.155 4.155 26 C 0.063 3.937 27 O -0.403 6.403 28 C 0.062 3.938 29 C -0.162 4.162 30 H 0.286 0.714 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.418 0.582 38 H 0.421 0.579 39 H 0.110 0.890 40 H 0.057 0.943 41 H 0.089 0.911 42 H 0.067 0.933 43 H 0.105 0.895 44 H 0.062 0.938 45 H 0.107 0.893 46 H 0.086 0.914 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.334 -2.990 -5.986 21.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.179 4.179 3 Si 0.795 3.205 4 H -0.180 1.180 5 H -0.186 1.186 6 H -0.197 1.197 7 C -0.510 4.510 8 H 0.094 0.906 9 C 0.096 3.904 10 C -0.213 4.213 11 C -0.135 4.135 12 C -0.264 4.264 13 C -0.112 4.112 14 C -0.190 4.190 15 C -0.108 4.108 16 C 0.314 3.686 17 O -0.445 6.445 18 N -0.362 5.362 19 C 0.052 3.948 20 H 0.130 0.870 21 C 0.314 3.686 22 O -0.431 6.431 23 O -0.312 6.312 24 C -0.102 4.102 25 C -0.193 4.193 26 C -0.013 4.013 27 O -0.322 6.322 28 C -0.014 4.014 29 C -0.199 4.199 30 H 0.096 0.904 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.257 0.743 38 H 0.283 0.717 39 H 0.128 0.872 40 H 0.075 0.925 41 H 0.108 0.892 42 H 0.086 0.914 43 H 0.123 0.877 44 H 0.080 0.920 45 H 0.125 0.875 46 H 0.105 0.895 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 19.962 -2.778 -5.378 20.860 hybrid contribution -0.576 -0.015 0.276 0.639 sum 19.386 -2.793 -5.102 20.240 Atomic orbital electron populations 1.69893 1.08970 1.30218 1.36216 1.26711 0.95402 1.04316 0.91448 0.85282 0.79641 0.76751 0.78818 1.17978 1.18631 1.19722 1.19671 0.97336 0.91707 1.42296 0.90563 1.17727 0.91274 0.92745 0.88609 1.21318 1.00623 0.96730 1.02632 1.20944 0.99208 0.93354 0.99955 1.20685 1.01572 0.96826 1.07357 1.20720 0.95805 0.96596 0.98049 1.19498 1.00389 0.93429 1.05687 1.20272 0.88763 1.04747 0.97005 1.21222 0.85419 0.73246 0.88690 1.90663 1.87394 1.49619 1.16780 1.45696 1.03594 1.76125 1.10774 1.20580 0.87057 0.89416 0.97705 0.87034 1.24234 0.77217 0.92975 0.74180 1.90711 1.49272 1.49137 1.54030 1.84571 1.44186 1.37719 1.64694 1.21458 0.92228 1.01311 0.95216 1.22339 1.00571 0.99357 0.97056 1.22639 0.84289 1.01833 0.92573 1.87919 1.39732 1.69237 1.35299 1.22684 0.98829 0.93888 0.86024 1.22515 0.93365 1.05267 0.98794 0.90375 0.88363 0.87675 0.86981 0.87319 0.87445 0.87549 0.74311 0.71739 0.87210 0.92463 0.89236 0.91441 0.87670 0.92006 0.87504 0.89507 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.39 10.97 21.82 0.24 -43.15 16 2 C 0.04 1.79 5.16 85.26 0.44 2.23 16 3 Si 0.97 37.83 29.59 68.60 2.03 39.86 16 4 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 5 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 6 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 7 C -0.48 -25.42 8.14 23.46 0.19 -25.23 16 8 H 0.08 3.85 6.68 -2.91 -0.02 3.83 16 9 C 0.10 5.41 5.56 -21.29 -0.12 5.29 16 10 C -0.19 -10.79 8.69 22.73 0.20 -10.59 16 11 C -0.12 -5.85 10.02 22.22 0.22 -5.63 16 12 C -0.25 -11.60 10.05 22.46 0.23 -11.38 16 13 C -0.09 -4.41 9.66 22.22 0.21 -4.20 16 14 C -0.19 -9.21 4.43 -19.41 -0.09 -9.30 16 15 C -0.07 -2.65 5.18 29.10 0.15 -2.50 16 16 C 0.53 20.28 7.29 87.66 0.64 20.92 16 17 O -0.57 -27.53 15.70 -3.02 -0.05 -27.58 16 18 N -0.71 -19.44 4.53 -446.11 -2.02 -21.46 16 19 C 0.16 3.92 2.35 44.25 0.10 4.03 16 20 H 0.11 3.13 7.58 -2.39 -0.02 3.12 16 21 C 0.47 12.45 6.28 71.23 0.45 12.90 16 22 O -0.54 -18.33 17.08 21.97 0.38 -17.96 16 23 O -0.50 -9.31 10.30 -51.42 -0.53 -9.84 16 24 C -0.08 -1.35 2.26 -10.67 -0.02 -1.38 16 25 C -0.16 -2.28 5.00 30.69 0.15 -2.12 16 26 C 0.06 0.81 6.84 72.02 0.49 1.30 16 27 O -0.40 -6.69 10.77 -148.98 -1.60 -8.30 16 28 C 0.06 0.79 6.84 72.01 0.49 1.29 16 29 C -0.16 -2.34 5.01 30.69 0.15 -2.18 16 30 H 0.29 13.57 8.30 -92.71 -0.77 12.80 16 31 H 0.10 5.70 6.22 -2.91 -0.02 5.68 16 32 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 33 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 34 H 0.11 4.50 8.06 -2.91 -0.02 4.47 16 35 H 0.11 3.46 8.05 -2.39 -0.02 3.44 16 36 H 0.11 3.91 7.06 -2.39 -0.02 3.89 16 37 H 0.42 8.58 6.94 -92.71 -0.64 7.94 16 38 H 0.42 4.68 9.10 -74.06 -0.67 4.01 16 39 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.06 1.03 7.12 -2.39 -0.02 1.01 16 41 H 0.09 1.10 6.64 -2.39 -0.02 1.09 16 42 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 43 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.11 1.10 8.14 -2.39 -0.02 1.09 16 46 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.09 1.53 5.13 -2.39 -0.01 1.51 16 Total: -1.00 -76.31 380.85 2.05 -74.26 By element: Atomic # 1 Polarization: 41.01 SS G_CDS: -0.29 Total: 40.72 kcal Atomic # 6 Polarization: -30.45 SS G_CDS: 3.90 Total: -26.56 kcal Atomic # 7 Polarization: -62.83 SS G_CDS: -1.78 Total: -64.61 kcal Atomic # 8 Polarization: -61.87 SS G_CDS: -1.81 Total: -63.68 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 2.03 Total: 39.86 kcal Total: -76.31 2.05 -74.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608189291.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.488 kcal (2) G-P(sol) polarization free energy of solvation -76.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds