Wall clock time and date at job start Wed Apr 1 2020 04:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42909 * 113.99645 * 2 1 4 4 C 1.52998 * 109.46806 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.46601 * 179.97438 * 4 3 2 6 6 N 1.46509 * 109.46883 * 180.02562 * 5 4 3 7 7 N 1.28384 * 119.09903 * 270.26176 * 6 5 4 8 8 C 1.31418 * 122.26053 * 180.28203 * 7 6 5 9 9 C 1.47854 * 119.89258 * 179.74158 * 8 7 6 10 10 O 1.21578 * 120.00013 * 179.72048 * 9 8 7 11 11 N 1.34780 * 120.00280 * 359.71784 * 9 8 7 12 12 C 1.40513 * 120.00414 * 180.02562 * 11 9 8 13 13 C 1.40670 * 126.08401 * 359.97130 * 12 11 9 14 14 N 1.30901 * 108.38421 * 179.74504 * 13 12 11 15 15 N 1.40070 * 108.41420 * 0.43868 * 14 13 12 16 16 C 1.37314 * 126.06769 * 179.81720 * 15 14 13 17 17 H 1.07998 * 120.00425 * 185.45378 * 16 15 14 18 18 C 1.38989 * 119.99795 * 5.18157 * 16 15 14 19 19 N 1.31295 * 120.00245 * 354.31613 * 18 16 15 20 20 Si 1.86803 * 120.00145 * 174.31102 * 18 16 15 21 21 H 1.48494 * 109.47248 * 94.97708 * 20 18 16 22 22 H 1.48500 * 109.47261 * 214.98192 * 20 18 16 23 23 H 1.48506 * 109.46671 * 334.98298 * 20 18 16 24 24 C 1.35695 * 126.08682 * 180.02562 * 12 11 9 25 25 C 1.41590 * 120.21045 * 359.45584 * 8 7 6 26 26 C 1.36317 * 118.23677 * 0.26275 * 25 8 7 27 27 C 1.34608 * 119.09822 * 90.00028 * 6 5 4 28 28 O 1.21980 * 120.22647 * 0.02562 * 27 6 5 29 29 H 1.08997 * 109.47740 * 300.00598 * 1 2 3 30 30 H 1.09002 * 109.47337 * 60.00813 * 1 2 3 31 31 H 1.09001 * 109.46901 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46901 * 59.99489 * 3 2 1 33 33 H 1.08997 * 109.46836 * 299.99434 * 3 2 1 34 34 H 1.08994 * 109.47105 * 60.00096 * 4 3 2 35 35 H 1.08997 * 109.47251 * 299.99535 * 4 3 2 36 36 H 1.08994 * 109.47080 * 60.00366 * 5 4 3 37 37 H 1.08997 * 109.47171 * 299.99869 * 5 4 3 38 38 H 0.97008 * 119.99879 * 0.02562 * 11 9 8 39 39 H 1.07999 * 125.80705 * 0.02562 * 13 12 11 40 40 H 0.96997 * 120.00151 * 179.97438 * 19 18 16 41 41 H 1.08000 * 126.25156 * 359.97438 * 24 12 11 42 42 H 1.08002 * 120.87513 * 180.23481 * 25 8 7 43 43 H 1.08000 * 121.03265 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1575 2.5826 0.0000 6 7 5.6181 2.4670 0.0000 7 7 6.2401 2.4131 1.1218 8 6 7.5486 2.3147 1.1943 9 6 8.2115 2.2623 2.5148 10 8 9.4215 2.1662 2.5842 11 7 7.4746 2.3211 3.6418 12 6 8.1046 2.2718 4.8967 13 6 9.4883 2.1619 5.1254 14 7 9.6935 2.1520 6.4182 15 7 8.4539 2.2446 7.0638 16 6 8.2487 2.2612 8.4214 17 1 7.2435 2.2470 8.8158 18 6 9.3349 2.2905 9.2880 19 7 10.5554 2.1898 8.8147 20 14 9.0584 2.4735 11.1264 21 1 9.0402 1.1308 11.7603 22 1 10.1556 3.2835 11.7139 23 1 7.7592 3.1517 11.3664 24 6 7.4866 2.3208 6.1038 25 6 8.3250 2.2527 0.0119 26 6 7.6788 2.3034 -1.1874 27 6 6.2706 2.4148 -1.1762 28 8 5.6502 2.4639 -2.2253 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.6884 1.8465 0.8899 33 1 1.6885 1.8464 -0.8900 34 1 3.8573 0.6438 -0.8891 35 1 3.8566 0.6441 0.8909 36 1 3.8356 3.1240 0.8895 37 1 3.8362 3.1229 -0.8904 38 1 6.5091 2.3975 3.5865 39 1 10.2517 2.1010 4.3639 40 1 11.3135 2.2106 9.4195 41 1 6.4234 2.4049 6.2740 42 1 9.4007 2.1680 0.0590 43 1 8.2265 2.2592 -2.1172 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001631318205.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:44 Heat of formation + Delta-G solvation = 15.746274 kcal Electronic energy + Delta-G solvation = -29050.780959 eV Core-core repulsion = 24713.243551 eV Total energy + Delta-G solvation = -4337.537408 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.32719 -41.69838 -40.33027 -38.98410 -38.87653 -36.61135 -35.98872 -35.01142 -33.73359 -32.55543 -32.08983 -29.68563 -28.64091 -27.24744 -26.71846 -26.01255 -24.70498 -23.22622 -22.81253 -22.48046 -21.27990 -20.00929 -19.18494 -18.97373 -17.92706 -17.75723 -17.57489 -17.36784 -17.15658 -16.78832 -16.70575 -16.16703 -15.93394 -15.71363 -15.40120 -15.22032 -15.11029 -14.84553 -14.71273 -14.39244 -14.32718 -13.48630 -13.44126 -13.29731 -13.24482 -12.91182 -12.87321 -12.83405 -12.72442 -12.10738 -12.06268 -12.03648 -11.87922 -11.54570 -11.19852 -11.01199 -10.91288 -10.77591 -10.63981 -10.07906 -9.78305 -8.52535 -8.45209 -6.21410 -0.70504 -0.04232 0.90271 1.27043 1.42521 1.55978 1.60568 1.86812 1.93947 2.20815 2.26831 2.63217 2.70126 2.79410 2.98043 3.11068 3.53086 3.66509 3.72566 3.83242 3.92957 4.03723 4.30344 4.35127 4.43438 4.46691 4.49589 4.53043 4.55457 4.59875 4.62571 4.80765 4.86865 4.90880 4.95334 5.03702 5.03802 5.09877 5.31003 5.40933 5.98005 6.20318 6.28824 6.33207 6.59030 6.75107 6.81276 7.22474 7.48167 7.70137 8.54319 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.011832 B = 0.002255 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.886545 B =12414.181300 C =14544.059290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.423 6.423 3 C 0.066 3.934 4 C -0.128 4.128 5 C 0.109 3.891 6 N -0.330 5.330 7 N -0.176 5.176 8 C 0.029 3.971 9 C 0.572 3.428 10 O -0.552 6.552 11 N -0.593 5.593 12 C -0.049 4.049 13 C -0.051 4.051 14 N -0.310 5.310 15 N -0.167 5.167 16 C -0.353 4.353 17 H 0.141 0.859 18 C -0.006 4.006 19 N -0.823 5.823 20 Si 1.017 2.983 21 H -0.266 1.266 22 H -0.278 1.278 23 H -0.244 1.244 24 C -0.074 4.074 25 C -0.026 4.026 26 C -0.185 4.185 27 C 0.473 3.527 28 O -0.553 6.553 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.134 0.866 37 H 0.118 0.882 38 H 0.422 0.578 39 H 0.174 0.826 40 H 0.276 0.724 41 H 0.188 0.812 42 H 0.177 0.823 43 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.827 1.200 -15.873 23.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.343 6.343 3 C -0.010 4.010 4 C -0.167 4.167 5 C -0.010 4.010 6 N -0.151 5.151 7 N -0.006 5.006 8 C -0.143 4.143 9 C 0.357 3.643 10 O -0.429 6.429 11 N -0.237 5.237 12 C -0.155 4.155 13 C -0.227 4.227 14 N -0.142 5.142 15 N 0.064 4.936 16 C -0.484 4.484 17 H 0.158 0.842 18 C -0.217 4.217 19 N -0.451 5.451 20 Si 0.836 3.164 21 H -0.191 1.191 22 H -0.203 1.203 23 H -0.167 1.167 24 C -0.225 4.225 25 C -0.049 4.049 26 C -0.214 4.214 27 C 0.273 3.727 28 O -0.434 6.434 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.110 0.890 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.152 0.848 37 H 0.136 0.864 38 H 0.260 0.740 39 H 0.191 0.809 40 H 0.086 0.914 41 H 0.205 0.795 42 H 0.195 0.805 43 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -16.922 0.991 -14.946 22.599 hybrid contribution -0.246 0.095 -0.641 0.693 sum -17.168 1.086 -15.586 23.214 Atomic orbital electron populations 1.22926 0.79138 1.03765 1.01158 1.87835 1.21785 1.28926 1.95709 1.22409 0.91577 0.84776 1.02277 1.21714 0.95390 0.96264 1.03321 1.22183 0.72307 0.98833 1.07687 1.46964 1.10487 1.55485 1.02190 1.71044 1.10776 1.06093 1.12727 1.21426 0.88640 1.08962 0.95223 1.17391 0.86047 0.78363 0.82530 1.90720 1.14402 1.51634 1.86116 1.42197 1.10636 1.68902 1.02009 1.17258 0.91592 1.21990 0.84640 1.24243 0.95694 1.08513 0.94231 1.78162 1.03873 1.27176 1.04996 1.44838 1.03071 1.40080 1.05612 1.20597 0.96743 1.53953 0.77084 0.84174 1.26848 0.93924 0.94233 1.06728 1.70388 0.99555 1.37066 1.38067 0.84610 0.79417 0.78973 0.73420 1.19065 1.20296 1.16668 1.21997 0.96139 1.17305 0.87020 1.22340 1.03746 0.89260 0.89530 1.22887 0.91890 1.05476 1.01195 1.18431 0.90779 0.79633 0.83841 1.90957 1.69775 1.52465 1.30169 0.92731 0.92913 0.88996 0.90642 0.91579 0.92310 0.90749 0.84833 0.86435 0.73976 0.80914 0.91392 0.79466 0.80531 0.78966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.52 16 2 O -0.42 -7.42 10.70 -148.98 -1.59 -9.01 16 3 C 0.07 0.83 5.94 71.98 0.43 1.25 16 4 C -0.13 -1.97 5.91 30.59 0.18 -1.78 16 5 C 0.11 1.48 5.55 86.38 0.48 1.96 16 6 N -0.33 -6.43 3.22 -472.46 -1.52 -7.95 16 7 N -0.18 -3.70 10.11 -48.20 -0.49 -4.19 16 8 C 0.03 0.69 6.84 42.58 0.29 0.98 16 9 C 0.57 18.51 7.78 86.79 0.67 19.18 16 10 O -0.55 -21.68 13.53 -3.96 -0.05 -21.73 16 11 N -0.59 -19.61 5.45 -306.51 -1.67 -21.28 16 12 C -0.05 -2.13 6.90 37.75 0.26 -1.87 16 13 C -0.05 -2.66 10.85 85.43 0.93 -1.73 16 14 N -0.31 -18.16 10.41 -56.46 -0.59 -18.74 16 15 N -0.17 -9.02 3.74 -190.01 -0.71 -9.73 16 16 C -0.35 -18.19 10.24 84.01 0.86 -17.33 16 17 H 0.14 6.24 7.84 -2.91 -0.02 6.22 16 18 C -0.01 -0.28 5.50 84.95 0.47 0.19 16 19 N -0.82 -46.63 11.83 21.66 0.26 -46.37 16 20 Si 1.02 37.76 29.56 68.60 2.03 39.79 16 21 H -0.27 -9.54 7.11 99.48 0.71 -8.83 16 22 H -0.28 -10.29 7.11 99.48 0.71 -9.58 16 23 H -0.24 -8.18 7.11 99.48 0.71 -7.47 16 24 C -0.07 -3.28 11.49 83.38 0.96 -2.32 16 25 C -0.03 -0.51 9.67 22.65 0.22 -0.29 16 26 C -0.19 -3.40 10.11 22.57 0.23 -3.17 16 27 C 0.47 10.53 7.47 85.01 0.63 11.16 16 28 O -0.55 -14.91 16.62 -5.25 -0.09 -14.99 16 29 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.12 1.49 7.35 -2.39 -0.02 1.47 16 38 H 0.42 10.84 8.16 -92.70 -0.76 10.09 16 39 H 0.17 8.89 5.92 -2.91 -0.02 8.87 16 40 H 0.28 14.39 8.31 -92.71 -0.77 13.62 16 41 H 0.19 6.49 8.06 -2.91 -0.02 6.46 16 42 H 0.18 3.13 7.72 -2.91 -0.02 3.11 16 43 H 0.19 2.51 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -77.33 378.27 3.74 -73.58 By element: Atomic # 1 Polarization: 32.56 SS G_CDS: 0.31 Total: 32.87 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 7.86 Total: 7.76 kcal Atomic # 7 Polarization: -103.55 SS G_CDS: -4.72 Total: -108.27 kcal Atomic # 8 Polarization: -44.00 SS G_CDS: -1.74 Total: -45.73 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 2.03 Total: 39.79 kcal Total: -77.33 3.74 -73.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631318205.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.331 kcal (2) G-P(sol) polarization free energy of solvation -77.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds