Wall clock time and date at job start Wed Apr 1 2020 04:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35643 * 116.99727 * 2 1 4 4 C 1.39356 * 120.03704 * 179.97438 * 3 2 1 5 5 C 1.38417 * 118.01864 * 179.97438 * 4 3 2 6 6 C 1.39819 * 117.95846 * 0.02562 * 5 4 3 7 7 C 1.48406 * 120.11437 * 179.97438 * 6 5 4 8 8 N 1.30764 * 126.41328 * 359.97438 * 7 6 5 9 9 O 1.21290 * 110.09378 * 179.74749 * 8 7 6 10 10 C 1.33669 * 110.03200 * 0.40407 * 9 8 7 11 11 C 1.50696 * 126.44097 * 179.86738 * 10 9 8 12 12 N 1.46905 * 109.47020 * 269.68516 * 11 10 9 13 13 C 1.47903 * 110.99878 * 290.12549 * 12 11 10 14 14 C 1.53988 * 107.05887 * 145.84548 * 13 12 11 15 15 C 1.54605 * 105.13970 * 358.77212 * 14 13 12 16 16 O 1.42896 * 110.72210 * 96.40060 * 15 14 13 17 17 C 1.50697 * 110.72274 * 219.68853 * 15 14 13 18 18 H 1.08001 * 120.00143 * 117.54424 * 17 15 14 19 19 C 1.37875 * 119.99994 * 297.53888 * 17 15 14 20 20 N 1.31517 * 119.99955 * 3.58998 * 19 17 15 21 21 Si 1.86805 * 120.00216 * 183.58977 * 19 17 15 22 22 H 1.48499 * 109.46732 * 85.00697 * 21 19 17 23 23 H 1.48498 * 109.47189 * 205.00866 * 21 19 17 24 24 H 1.48504 * 109.46960 * 325.01131 * 21 19 17 25 25 C 1.48528 * 110.99791 * 47.52160 * 12 11 10 26 26 N 1.30975 * 107.12238 * 359.59993 * 10 9 8 27 27 N 1.32594 * 119.77143 * 0.24734 * 6 5 4 28 28 N 1.28354 * 122.11790 * 359.47705 * 27 6 5 29 29 H 1.08999 * 109.46688 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47505 * 300.00253 * 1 2 3 31 31 H 1.09006 * 109.46820 * 60.00290 * 1 2 3 32 32 H 1.08003 * 120.98917 * 359.95375 * 4 3 2 33 33 H 1.08002 * 121.02512 * 180.02562 * 5 4 3 34 34 H 1.08998 * 109.47495 * 149.68528 * 11 10 9 35 35 H 1.09000 * 109.47430 * 29.68521 * 11 10 9 36 36 H 1.09005 * 109.91839 * 26.48885 * 13 12 11 37 37 H 1.09004 * 110.07849 * 265.28921 * 13 12 11 38 38 H 1.08994 * 110.31458 * 117.69011 * 14 13 12 39 39 H 1.09004 * 110.30701 * 239.86510 * 14 13 12 40 40 H 0.96703 * 114.00101 * 54.66356 * 16 15 14 41 41 H 0.97005 * 120.00121 * 179.97438 * 20 19 17 42 42 H 1.08998 * 110.67132 * 318.71347 * 25 12 11 43 43 H 1.09000 * 110.66860 * 81.67735 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 3.4364 1.2825 0.0005 5 6 4.0209 2.5372 0.0000 6 6 3.1782 3.6529 -0.0006 7 6 3.7538 5.0208 -0.0006 8 7 5.0249 5.3281 0.0003 9 8 5.1622 6.5332 -0.0051 10 6 3.9664 7.1303 -0.0012 11 6 3.7072 8.6148 -0.0027 12 7 3.6212 9.0984 1.3818 13 6 2.3899 8.6087 2.0387 14 6 2.7324 8.3718 3.5212 15 6 4.2318 8.7259 3.6508 16 8 4.3962 10.0677 4.1138 17 6 4.9318 7.7547 4.5660 18 1 5.7264 7.1303 4.1849 19 6 4.5581 7.6633 5.8900 20 7 3.5445 8.3718 6.3376 21 14 5.4913 6.5331 7.0482 22 1 6.6814 7.2438 7.5810 23 1 4.6065 6.1370 8.1731 24 1 5.9281 5.3202 6.3110 25 6 4.7490 8.5800 2.1976 26 7 3.0622 6.1828 -0.0016 27 7 1.8630 3.4847 0.0045 28 7 1.3240 2.3198 0.0000 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 4.0407 0.3874 0.0017 33 1 5.0949 2.6510 -0.0001 34 1 2.7686 8.8193 -0.5179 35 1 4.5220 9.1255 -0.5160 36 1 2.0694 7.6743 1.5777 37 1 1.5991 9.3542 1.9548 38 1 2.1334 9.0239 4.1568 39 1 2.5662 7.3275 3.7857 40 1 3.9305 10.2588 4.9394 41 1 3.2813 8.3073 7.2690 42 1 4.9451 7.5339 1.9623 43 1 5.6443 9.1821 2.0429 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649846461.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:03 Heat of formation + Delta-G solvation = 66.562859 kcal Electronic energy + Delta-G solvation = -30641.227515 eV Core-core repulsion = 26305.893679 eV Total energy + Delta-G solvation = -4335.333836 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.55679 -41.53719 -38.88981 -38.67931 -35.96831 -35.17880 -33.81633 -32.83356 -32.15911 -31.57749 -29.99629 -28.17006 -28.01006 -26.38866 -25.90141 -24.58775 -24.15193 -23.29396 -21.90349 -20.25712 -19.65555 -19.02651 -18.24659 -18.23199 -17.70410 -16.97583 -16.65665 -16.30203 -15.52508 -15.04120 -14.95839 -14.82482 -14.68342 -14.55471 -14.53493 -13.91516 -13.72910 -13.37885 -12.77687 -12.52047 -12.41485 -12.32880 -12.13117 -11.95567 -11.78246 -11.62953 -11.33048 -11.20268 -11.05045 -10.98986 -10.76532 -10.69369 -10.46563 -10.41516 -10.19262 -10.00135 -9.84118 -9.24631 -9.18928 -8.61890 -8.24524 -8.07152 -6.22340 -4.29864 0.20641 0.38473 1.26443 2.25974 2.43332 2.81669 3.04233 3.21770 3.28176 3.29463 3.30836 3.56017 3.88272 4.25902 4.32196 4.38172 4.48077 4.51066 4.77052 4.86927 4.93834 5.04337 5.12032 5.20561 5.24698 5.36744 5.44370 5.58681 5.60831 5.72570 5.84748 5.92141 6.00756 6.12293 6.39634 6.47101 6.56301 6.76892 6.96992 7.20416 7.33213 7.42473 7.48865 7.78501 8.08796 8.14821 8.25558 8.71250 9.38371 9.47263 10.85055 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010278 B = 0.003355 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.637987 B = 8344.960390 C = 9731.025080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.298 6.298 3 C 0.269 3.731 4 C -0.131 4.131 5 C -0.052 4.052 6 C 0.117 3.883 7 C 0.215 3.785 8 N -0.364 5.364 9 O 0.093 5.907 10 C 0.167 3.833 11 C 0.131 3.869 12 N -0.488 5.488 13 C 0.020 3.980 14 C -0.128 4.128 15 C 0.259 3.741 16 O -0.577 6.577 17 C -0.538 4.538 18 H 0.058 0.942 19 C 0.074 3.926 20 N -0.891 5.891 21 Si 0.896 3.104 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.045 3.955 26 N -0.447 5.447 27 N -0.153 5.153 28 N -0.292 5.292 29 H 0.103 0.897 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.165 0.835 33 H 0.166 0.834 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.376 0.624 41 H 0.266 0.734 42 H 0.045 0.955 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.606 -11.360 -14.578 18.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.201 6.201 3 C 0.084 3.916 4 C -0.160 4.160 5 C -0.082 4.082 6 C -0.030 4.030 7 C -0.057 4.057 8 N -0.070 5.070 9 O 0.029 5.971 10 C -0.056 4.056 11 C -0.001 4.001 12 N -0.211 5.211 13 C -0.108 4.108 14 C -0.167 4.167 15 C 0.219 3.781 16 O -0.385 6.385 17 C -0.577 4.577 18 H 0.076 0.924 19 C -0.129 4.129 20 N -0.530 5.530 21 Si 0.724 3.276 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.082 4.082 26 N -0.180 5.180 27 N 0.000 5.000 28 N -0.149 5.149 29 H 0.121 0.879 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.183 0.817 33 H 0.184 0.816 34 H 0.135 0.865 35 H 0.131 0.869 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.225 0.775 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.576 -11.148 -14.982 19.014 hybrid contribution 1.218 -2.138 1.350 2.806 sum -2.357 -13.286 -13.632 19.181 Atomic orbital electron populations 1.23079 0.76140 1.03769 1.03298 1.86231 1.23759 1.23075 1.87050 1.21655 0.91055 0.87314 0.91592 1.21470 0.92254 0.99606 1.02709 1.22235 1.02665 0.90355 0.92898 1.19321 0.91686 0.89057 1.02944 1.22854 0.85998 0.93184 1.03652 1.74800 1.18532 0.94014 1.19633 1.85344 1.34230 1.12764 1.64717 1.30504 0.78943 1.01305 0.94812 1.21671 1.05082 0.77807 0.95543 1.65185 1.04675 1.51911 0.99291 1.23186 0.91862 0.98632 0.97095 1.22950 1.00351 1.01733 0.91679 1.19292 0.89549 0.81395 0.87891 1.86149 1.76828 1.30710 1.44776 1.21512 1.19619 1.21634 0.94895 0.92364 1.24955 0.94377 0.95403 0.98117 1.69762 1.25899 1.41250 1.16082 0.86542 0.79929 0.80849 0.80305 1.20178 1.21094 1.20047 1.23424 0.93464 0.96881 0.94425 1.72136 1.30456 0.96706 1.18660 1.73085 1.09263 1.13178 1.04443 1.73269 1.30990 0.93811 1.16823 0.87882 0.91516 0.91634 0.81695 0.81625 0.86456 0.86892 0.93025 0.90967 0.91198 0.92110 0.77508 0.92364 0.93707 0.89841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.39 101.05 1.05 1.29 16 2 O -0.30 -3.00 10.49 -18.63 -0.20 -3.19 16 3 C 0.27 3.18 7.57 -16.87 -0.13 3.05 16 4 C -0.13 -1.30 10.14 -39.10 -0.40 -1.69 16 5 C -0.05 -0.60 9.83 -38.92 -0.38 -0.98 16 6 C 0.12 1.79 6.84 -82.76 -0.57 1.22 16 7 C 0.21 3.61 7.92 -156.11 -1.24 2.37 16 8 N -0.36 -5.94 11.90 30.97 0.37 -5.58 16 9 O 0.09 1.49 10.21 18.04 0.18 1.67 16 10 C 0.17 2.63 5.63 -12.99 -0.07 2.56 16 11 C 0.13 1.77 6.11 -4.98 -0.03 1.74 16 12 N -0.49 -8.74 5.54 -231.89 -1.28 -10.02 16 13 C 0.02 0.38 6.46 -2.76 -0.02 0.36 16 14 C -0.13 -2.98 5.22 -25.37 -0.13 -3.11 16 15 C 0.26 6.36 0.94 -89.91 -0.08 6.28 16 16 O -0.58 -14.77 13.10 -35.23 -0.46 -15.23 16 17 C -0.54 -14.53 8.13 -34.44 -0.28 -14.81 16 18 H 0.06 1.59 7.78 -52.49 -0.41 1.18 16 19 C 0.07 1.99 5.31 -17.82 -0.09 1.90 16 20 N -0.89 -23.91 11.11 55.43 0.62 -23.29 16 21 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C 0.04 0.94 5.44 -1.90 -0.01 0.92 16 26 N -0.45 -7.75 10.51 -9.89 -0.10 -7.85 16 27 N -0.15 -2.50 11.45 33.37 0.38 -2.12 16 28 N -0.29 -4.20 10.40 30.53 0.32 -3.88 16 29 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 31 H 0.06 0.49 8.11 -51.93 -0.42 0.07 16 32 H 0.17 1.05 8.06 -52.48 -0.42 0.62 16 33 H 0.17 1.56 7.93 -52.49 -0.42 1.14 16 34 H 0.12 1.35 8.08 -51.93 -0.42 0.93 16 35 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.05 0.99 6.22 -51.93 -0.32 0.67 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.07 1.68 7.86 -51.93 -0.41 1.27 16 39 H 0.06 1.54 7.84 -51.93 -0.41 1.13 16 40 H 0.38 9.67 7.56 45.56 0.34 10.01 16 41 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 42 H 0.04 0.95 5.34 -51.93 -0.28 0.68 16 43 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 LS Contribution 365.26 15.07 5.50 5.50 Total: -1.00 -31.42 365.26 -6.48 -37.90 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -4.41 Total: 9.01 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -2.38 Total: 1.09 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: 0.30 Total: -52.74 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.47 Total: -16.76 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.42 -6.48 -37.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649846461.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.466 kcal (2) G-P(sol) polarization free energy of solvation -31.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds