Wall clock time and date at job start Wed Apr 1 2020 04:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35643 * 116.99727 * 2 1 4 4 C 1.39356 * 120.03704 * 179.97438 * 3 2 1 5 5 C 1.38417 * 118.01864 * 179.97438 * 4 3 2 6 6 C 1.39819 * 117.95846 * 0.02562 * 5 4 3 7 7 C 1.48406 * 120.11437 * 179.97438 * 6 5 4 8 8 N 1.30764 * 126.41328 * 359.97438 * 7 6 5 9 9 O 1.21290 * 110.09378 * 179.74749 * 8 7 6 10 10 C 1.33669 * 110.03200 * 0.40407 * 9 8 7 11 11 C 1.50696 * 126.44097 * 179.86738 * 10 9 8 12 12 N 1.46905 * 109.47020 * 269.68516 * 11 10 9 13 13 C 1.47903 * 110.99878 * 290.12549 * 12 11 10 14 14 C 1.53988 * 107.05887 * 145.84548 * 13 12 11 15 15 C 1.54605 * 105.13970 * 358.77212 * 14 13 12 16 16 O 1.42896 * 110.72210 * 96.40060 * 15 14 13 17 17 C 1.50697 * 110.72274 * 219.68853 * 15 14 13 18 18 H 1.08001 * 120.00143 * 117.54424 * 17 15 14 19 19 C 1.37875 * 119.99994 * 297.53888 * 17 15 14 20 20 N 1.31517 * 119.99955 * 3.58998 * 19 17 15 21 21 Si 1.86805 * 120.00216 * 183.58977 * 19 17 15 22 22 H 1.48499 * 109.46732 * 85.00697 * 21 19 17 23 23 H 1.48498 * 109.47189 * 205.00866 * 21 19 17 24 24 H 1.48504 * 109.46960 * 325.01131 * 21 19 17 25 25 C 1.48528 * 110.99791 * 47.52160 * 12 11 10 26 26 N 1.30975 * 107.12238 * 359.59993 * 10 9 8 27 27 N 1.32594 * 119.77143 * 0.24734 * 6 5 4 28 28 N 1.28354 * 122.11790 * 359.47705 * 27 6 5 29 29 H 1.08999 * 109.46688 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47505 * 300.00253 * 1 2 3 31 31 H 1.09006 * 109.46820 * 60.00290 * 1 2 3 32 32 H 1.08003 * 120.98917 * 359.95375 * 4 3 2 33 33 H 1.08002 * 121.02512 * 180.02562 * 5 4 3 34 34 H 1.08998 * 109.47495 * 149.68528 * 11 10 9 35 35 H 1.09000 * 109.47430 * 29.68521 * 11 10 9 36 36 H 1.09005 * 109.91839 * 26.48885 * 13 12 11 37 37 H 1.09004 * 110.07849 * 265.28921 * 13 12 11 38 38 H 1.08994 * 110.31458 * 117.69011 * 14 13 12 39 39 H 1.09004 * 110.30701 * 239.86510 * 14 13 12 40 40 H 0.96703 * 114.00101 * 54.66356 * 16 15 14 41 41 H 0.97005 * 120.00121 * 179.97438 * 20 19 17 42 42 H 1.08998 * 110.67132 * 318.71347 * 25 12 11 43 43 H 1.09000 * 110.66860 * 81.67735 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 3.4364 1.2825 0.0005 5 6 4.0209 2.5372 0.0000 6 6 3.1782 3.6529 -0.0006 7 6 3.7538 5.0208 -0.0006 8 7 5.0249 5.3281 0.0003 9 8 5.1622 6.5332 -0.0051 10 6 3.9664 7.1303 -0.0012 11 6 3.7072 8.6148 -0.0027 12 7 3.6212 9.0984 1.3818 13 6 2.3899 8.6087 2.0387 14 6 2.7324 8.3718 3.5212 15 6 4.2318 8.7259 3.6508 16 8 4.3962 10.0677 4.1138 17 6 4.9318 7.7547 4.5660 18 1 5.7264 7.1303 4.1849 19 6 4.5581 7.6633 5.8900 20 7 3.5445 8.3718 6.3376 21 14 5.4913 6.5331 7.0482 22 1 6.6814 7.2438 7.5810 23 1 4.6065 6.1370 8.1731 24 1 5.9281 5.3202 6.3110 25 6 4.7490 8.5800 2.1976 26 7 3.0622 6.1828 -0.0016 27 7 1.8630 3.4847 0.0045 28 7 1.3240 2.3198 0.0000 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 4.0407 0.3874 0.0017 33 1 5.0949 2.6510 -0.0001 34 1 2.7686 8.8193 -0.5179 35 1 4.5220 9.1255 -0.5160 36 1 2.0694 7.6743 1.5777 37 1 1.5991 9.3542 1.9548 38 1 2.1334 9.0239 4.1568 39 1 2.5662 7.3275 3.7857 40 1 3.9305 10.2588 4.9394 41 1 3.2813 8.3073 7.2690 42 1 4.9451 7.5339 1.9623 43 1 5.6443 9.1821 2.0429 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649846461.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:02 Heat of formation + Delta-G solvation = 38.156069 kcal Electronic energy + Delta-G solvation = -30642.459326 eV Core-core repulsion = 26305.893679 eV Total energy + Delta-G solvation = -4336.565647 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.79309 -42.48808 -40.30354 -39.72250 -37.30595 -36.77791 -34.88099 -34.21843 -34.00929 -32.72126 -31.52297 -29.91987 -28.73256 -27.92831 -27.03140 -26.15290 -25.20138 -24.51426 -23.17106 -21.76604 -21.48096 -19.90521 -19.57504 -19.28907 -18.91100 -18.70891 -17.51255 -17.44706 -17.10960 -16.89701 -16.28132 -16.20099 -15.77271 -15.60156 -15.48726 -15.39712 -14.97421 -14.64635 -14.39500 -14.17631 -13.62653 -13.53661 -13.36737 -13.21384 -13.08677 -12.93031 -12.89479 -12.69117 -12.59400 -12.46444 -12.31853 -12.30175 -12.24377 -11.78057 -11.67839 -11.26841 -11.14611 -10.96756 -10.64802 -10.21025 -10.13427 -9.67375 -8.25903 -6.40350 -0.83214 -0.51208 0.07583 1.08401 1.34133 1.36055 1.43676 1.57196 1.65257 1.98906 2.27321 2.32920 2.47704 2.94944 2.98144 3.03573 3.31705 3.46821 3.65399 3.79789 3.86689 3.95265 4.04904 4.16452 4.24551 4.32147 4.34255 4.40951 4.46631 4.59829 4.63293 4.66672 4.68864 4.74357 4.81294 4.85279 5.04571 5.15801 5.39426 5.51636 5.62055 5.75492 5.77818 5.91842 6.16818 6.63691 6.86401 7.24746 7.31062 7.42989 8.79607 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010278 B = 0.003355 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.637987 B = 8344.960390 C = 9731.025080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.295 6.295 3 C 0.265 3.735 4 C -0.110 4.110 5 C -0.052 4.052 6 C 0.094 3.906 7 C 0.206 3.794 8 N -0.368 5.368 9 O 0.090 5.910 10 C 0.170 3.830 11 C 0.130 3.870 12 N -0.485 5.485 13 C 0.031 3.969 14 C -0.120 4.120 15 C 0.242 3.758 16 O -0.581 6.581 17 C -0.563 4.563 18 H 0.047 0.953 19 C 0.033 3.967 20 N -0.906 5.906 21 Si 0.951 3.049 22 H -0.270 1.270 23 H -0.280 1.280 24 H -0.277 1.277 25 C 0.056 3.944 26 N -0.471 5.471 27 N -0.190 5.190 28 N -0.314 5.314 29 H 0.137 0.863 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.208 0.792 33 H 0.187 0.813 34 H 0.145 0.855 35 H 0.151 0.849 36 H 0.051 0.949 37 H 0.092 0.908 38 H 0.054 0.946 39 H 0.028 0.972 40 H 0.371 0.629 41 H 0.268 0.732 42 H 0.038 0.962 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.954 -12.561 -15.677 20.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.198 6.198 3 C 0.079 3.921 4 C -0.139 4.139 5 C -0.080 4.080 6 C -0.054 4.054 7 C -0.066 4.066 8 N -0.075 5.075 9 O 0.027 5.973 10 C -0.052 4.052 11 C 0.000 4.000 12 N -0.207 5.207 13 C -0.097 4.097 14 C -0.159 4.159 15 C 0.202 3.798 16 O -0.388 6.388 17 C -0.602 4.602 18 H 0.065 0.935 19 C -0.168 4.168 20 N -0.544 5.544 21 Si 0.776 3.224 22 H -0.195 1.195 23 H -0.205 1.205 24 H -0.202 1.202 25 C -0.072 4.072 26 N -0.204 5.204 27 N -0.036 5.036 28 N -0.171 5.171 29 H 0.155 0.845 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.225 0.775 33 H 0.204 0.796 34 H 0.163 0.837 35 H 0.169 0.831 36 H 0.069 0.931 37 H 0.110 0.890 38 H 0.072 0.928 39 H 0.047 0.953 40 H 0.219 0.781 41 H 0.078 0.922 42 H 0.056 0.944 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.931 -12.346 -16.097 20.497 hybrid contribution 0.962 -1.868 1.681 2.690 sum -1.969 -14.214 -14.416 20.341 Atomic orbital electron populations 1.23326 0.74866 1.05865 1.02782 1.86259 1.25021 1.21900 1.86596 1.21956 0.92055 0.87253 0.90799 1.21921 0.91677 1.00393 0.99939 1.22470 1.03300 0.89847 0.92391 1.19512 0.92114 0.89411 1.04367 1.23227 0.86137 0.93888 1.03320 1.74765 1.18412 0.94167 1.20110 1.85312 1.34386 1.12771 1.64801 1.30805 0.78602 1.01817 0.94019 1.22037 1.08231 0.76639 0.93140 1.65117 1.02770 1.51967 1.00839 1.23050 0.93009 0.99349 0.94257 1.22720 0.99598 0.99145 0.94422 1.19495 0.90272 0.80399 0.89610 1.86137 1.76890 1.31322 1.44491 1.21794 1.19873 1.22463 0.96025 0.93461 1.25615 0.95115 0.96694 0.99369 1.69839 1.26421 1.41855 1.16327 0.85692 0.78989 0.79136 0.78549 1.19547 1.20490 1.20208 1.23192 0.94502 0.96775 0.92682 1.72127 1.31348 0.97415 1.19499 1.72980 1.10174 1.14396 1.06032 1.73138 1.31777 0.94173 1.18049 0.84472 0.92405 0.91821 0.77496 0.79611 0.83738 0.83095 0.93105 0.88978 0.92755 0.95316 0.78085 0.92234 0.94363 0.89341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.39 113.37 1.18 1.53 16 2 O -0.29 -5.39 10.49 -89.57 -0.94 -6.33 16 3 C 0.26 5.94 7.57 84.87 0.64 6.58 16 4 C -0.11 -1.92 10.14 22.58 0.23 -1.70 16 5 C -0.05 -1.12 9.83 22.70 0.22 -0.89 16 6 C 0.09 2.88 6.84 42.12 0.29 3.16 16 7 C 0.21 6.94 7.92 137.29 1.09 8.02 16 8 N -0.37 -11.87 11.90 -59.14 -0.70 -12.57 16 9 O 0.09 2.80 10.21 74.61 0.76 3.56 16 10 C 0.17 5.15 5.63 88.35 0.50 5.65 16 11 C 0.13 3.19 6.11 85.55 0.52 3.71 16 12 N -0.48 -16.52 5.54 -887.57 -4.91 -21.44 16 13 C 0.03 1.16 6.46 86.44 0.56 1.72 16 14 C -0.12 -5.68 5.22 31.47 0.16 -5.52 16 15 C 0.24 12.04 0.94 -10.33 -0.01 12.03 16 16 O -0.58 -30.02 13.10 -148.98 -1.95 -31.97 16 17 C -0.56 -30.97 8.13 25.60 0.21 -30.76 16 18 H 0.05 2.63 7.78 -2.91 -0.02 2.60 16 19 C 0.03 1.81 5.31 84.65 0.45 2.26 16 20 N -0.91 -49.35 11.11 21.45 0.24 -49.11 16 21 Si 0.95 43.32 29.54 68.60 2.03 45.35 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 C 0.06 2.30 5.44 86.65 0.47 2.77 16 26 N -0.47 -16.25 10.51 -302.53 -3.18 -19.43 16 27 N -0.19 -6.33 11.45 -48.33 -0.55 -6.88 16 28 N -0.31 -9.09 10.40 -170.11 -1.77 -10.86 16 29 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.91 8.11 -2.39 -0.02 0.89 16 31 H 0.06 0.91 8.11 -2.38 -0.02 0.89 16 32 H 0.21 1.76 8.06 -2.91 -0.02 1.73 16 33 H 0.19 3.15 7.93 -2.91 -0.02 3.12 16 34 H 0.14 2.84 8.08 -2.39 -0.02 2.82 16 35 H 0.15 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.05 1.93 6.22 -2.38 -0.01 1.92 16 37 H 0.09 3.12 8.14 -2.38 -0.02 3.10 16 38 H 0.05 2.68 7.86 -2.39 -0.02 2.66 16 39 H 0.03 1.49 7.84 -2.38 -0.02 1.47 16 40 H 0.37 19.49 7.56 -74.06 -0.56 18.93 16 41 H 0.27 13.96 8.31 -92.70 -0.77 13.19 16 42 H 0.04 1.62 5.34 -2.39 -0.01 1.61 16 43 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 Total: -1.00 -70.06 365.26 -3.95 -74.01 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: 0.52 Total: 27.08 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 6.51 Total: 8.57 kcal Atomic # 7 Polarization: -109.40 SS G_CDS: -10.88 Total: -120.28 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -2.13 Total: -34.73 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -70.06 -3.95 -74.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649846461.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.167 kcal (2) G-P(sol) polarization free energy of solvation -70.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds