Wall clock time and date at job start Wed Apr 1 2020 04:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00089 * 2 1 4 4 H 1.48492 * 109.47176 * 239.99837 * 3 2 1 5 5 H 1.48504 * 109.47290 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47210 * 119.99456 * 3 2 1 7 7 C 1.37874 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99797 * 185.64641 * 7 2 1 9 9 C 1.50701 * 120.00285 * 5.65009 * 7 2 1 10 10 C 1.52996 * 113.56592 * 69.37650 * 9 7 2 11 11 O 1.45194 * 109.47204 * 51.06802 * 10 9 7 12 12 C 1.34228 * 117.00110 * 179.97438 * 11 10 9 13 13 O 1.20827 * 120.00255 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00065 * 180.02562 * 12 11 10 15 15 C 1.53002 * 109.47160 * 180.02562 * 14 12 11 16 16 N 1.46500 * 109.46985 * 179.97438 * 15 14 12 17 17 C 1.34784 * 119.99778 * 180.02562 * 16 15 14 18 18 O 1.21282 * 119.99904 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99953 * 180.02562 * 17 16 15 20 20 C 1.50697 * 109.47022 * 179.97438 * 19 17 16 21 21 C 1.38233 * 119.99722 * 269.72492 * 20 19 17 22 22 C 1.38245 * 119.99573 * 179.77014 * 21 20 19 23 23 C 1.38236 * 119.99630 * 0.50262 * 22 21 20 24 24 C 1.38233 * 120.00209 * 359.75285 * 23 22 21 25 25 C 1.38233 * 120.00255 * 359.97438 * 24 23 22 26 26 C 1.53368 * 114.56295 * 295.10507 * 9 7 2 27 27 O 1.43353 * 88.44449 * 220.42122 * 26 9 7 28 28 C 1.43351 * 88.32282 * 28.14968 * 27 26 9 29 29 H 0.97002 * 119.99699 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46747 * 171.07176 * 10 9 7 31 31 H 1.09003 * 109.47138 * 291.06739 * 10 9 7 32 32 H 1.09004 * 109.47086 * 300.00049 * 14 12 11 33 33 H 1.09002 * 109.47276 * 60.00109 * 14 12 11 34 34 H 1.08995 * 109.47123 * 300.00073 * 15 14 12 35 35 H 1.09002 * 109.47132 * 59.99783 * 15 14 12 36 36 H 0.96995 * 120.00283 * 359.97438 * 16 15 14 37 37 H 1.09008 * 109.46953 * 299.99926 * 19 17 16 38 38 H 1.09002 * 109.47276 * 59.99491 * 19 17 16 39 39 H 1.07993 * 120.00162 * 359.97438 * 21 20 19 40 40 H 1.07989 * 119.99738 * 180.23213 * 22 21 20 41 41 H 1.08004 * 119.99569 * 179.72464 * 23 22 21 42 42 H 1.08001 * 119.99451 * 179.97438 * 24 23 22 43 43 H 1.08000 * 119.99931 * 179.97438 * 25 24 23 44 44 H 1.08993 * 113.39616 * 105.52216 * 26 9 7 45 45 H 1.09001 * 113.39265 * 335.31729 * 26 9 7 46 46 H 1.09002 * 113.38799 * 86.74776 * 28 27 26 47 47 H 1.08992 * 113.39212 * 216.90865 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0806 -1.1963 0.0926 9 6 1.2565 -2.4961 -0.1274 10 6 0.6381 -2.7130 -1.5099 11 8 1.6496 -2.5051 -2.5306 12 6 1.2669 -2.6588 -3.8079 13 8 0.1244 -2.9566 -4.0647 14 6 2.2622 -2.4598 -4.9219 15 6 1.5740 -2.6925 -6.2684 16 7 2.5415 -2.4985 -7.3512 17 6 2.1569 -2.6516 -8.6339 18 8 1.0101 -2.9505 -8.8916 19 6 3.1522 -2.4526 -9.7479 20 6 2.4743 -2.6817 -11.0741 21 6 2.4585 -3.9459 -11.6330 22 6 1.8325 -4.1569 -12.8474 23 6 1.2313 -3.1017 -13.5076 24 6 1.2517 -1.8365 -12.9511 25 6 1.8728 -1.6265 -11.7342 26 6 0.3211 -2.8119 1.0463 27 8 0.7469 -4.1784 0.9670 28 6 1.9961 -3.7146 0.4386 29 1 -0.4850 0.8401 -0.0004 30 1 0.2542 -3.7307 -1.5805 31 1 -0.1781 -2.0057 -1.6578 32 1 2.6512 -1.4423 -4.8841 33 1 3.0834 -3.1673 -4.8061 34 1 1.1847 -3.7098 -6.3064 35 1 0.7530 -1.9848 -6.3839 36 1 3.4585 -2.2591 -7.1452 37 1 3.5419 -1.4353 -9.7095 38 1 3.9729 -3.1606 -9.6326 39 1 2.9324 -4.7693 -11.1195 40 1 1.8169 -5.1453 -13.2822 41 1 0.7461 -3.2657 -14.4585 42 1 0.7823 -1.0120 -13.4673 43 1 1.8890 -0.6379 -11.2997 44 1 -0.7335 -2.6727 0.8087 45 1 0.6115 -2.3213 1.9753 46 1 2.7238 -3.4597 1.2091 47 1 2.4093 -4.3666 -0.3307 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650486430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:41 Heat of formation + Delta-G solvation = -113.897391 kcal Electronic energy + Delta-G solvation = -29094.741395 eV Core-core repulsion = 24822.829808 eV Total energy + Delta-G solvation = -4271.911587 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.33864 -40.04762 -39.42576 -38.86661 -36.04417 -35.15585 -33.21991 -33.04357 -31.28761 -31.13115 -29.90602 -27.97868 -25.81611 -25.12314 -24.56909 -23.75355 -22.83764 -21.91467 -20.78505 -20.04787 -18.72224 -17.37540 -17.35342 -17.04778 -16.76631 -16.37301 -15.88669 -15.82258 -15.50532 -15.18507 -15.09550 -14.86458 -14.60793 -14.20074 -14.08064 -13.91495 -13.82002 -13.62874 -13.30740 -12.69230 -12.60935 -12.42384 -12.23978 -12.08082 -11.80189 -11.52116 -11.42086 -11.39696 -11.25836 -11.12427 -10.97605 -10.70883 -10.58188 -10.17312 -9.94985 -9.86081 -9.26187 -9.13827 -9.08028 -9.00785 -8.97454 -8.74724 -8.52871 -6.21548 -4.25848 1.07327 1.18289 2.46229 2.68772 2.75312 3.21553 3.28040 3.29095 3.43747 3.66408 4.28831 4.31354 4.53112 4.53629 4.75195 4.80128 4.85811 4.92437 4.97777 5.07046 5.09525 5.10117 5.21244 5.25745 5.38327 5.42515 5.72532 5.75965 5.78895 5.79601 5.89800 5.99641 6.18254 6.20649 6.22479 6.27099 6.31428 6.31919 6.43359 6.61765 6.75252 6.79421 7.03597 7.09476 7.25432 7.26311 7.33155 7.73760 8.03726 8.08270 8.36743 8.71260 9.39537 10.87577 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.017324 B = 0.001823 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.879969 B =15356.795143 C =16276.894044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.069 3.931 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.505 4.505 8 H 0.065 0.935 9 C 0.021 3.979 10 C 0.108 3.892 11 O -0.329 6.329 12 C 0.458 3.542 13 O -0.519 6.519 14 C -0.127 4.127 15 C 0.131 3.869 16 N -0.732 5.732 17 C 0.512 3.488 18 O -0.526 6.526 19 C -0.102 4.102 20 C -0.067 4.067 21 C -0.105 4.105 22 C -0.120 4.120 23 C -0.122 4.122 24 C -0.120 4.120 25 C -0.105 4.105 26 C 0.060 3.940 27 O -0.403 6.403 28 C 0.031 3.969 29 H 0.265 0.735 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.401 0.599 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.292 -3.560 -21.302 23.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.134 4.134 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.543 4.543 8 H 0.083 0.917 9 C 0.020 3.980 10 C 0.035 3.965 11 O -0.244 6.244 12 C 0.300 3.700 13 O -0.410 6.410 14 C -0.165 4.165 15 C 0.007 3.993 16 N -0.386 5.386 17 C 0.298 3.702 18 O -0.401 6.401 19 C -0.142 4.142 20 C -0.067 4.067 21 C -0.124 4.124 22 C -0.138 4.138 23 C -0.140 4.140 24 C -0.138 4.138 25 C -0.123 4.123 26 C -0.017 4.017 27 O -0.323 6.323 28 C -0.046 4.046 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.235 0.765 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.801 -4.001 -21.423 23.148 hybrid contribution 0.734 1.254 0.221 1.470 sum 8.535 -2.747 -21.202 23.020 Atomic orbital electron populations 1.69904 1.05951 1.27338 1.49274 1.24973 0.94885 0.99247 0.94338 0.86594 0.79601 0.82722 0.78750 1.20112 1.21296 1.20123 1.20670 0.93383 0.89039 1.51218 0.91679 1.20415 0.93601 0.94619 0.89362 1.22819 0.89205 0.99127 0.85380 1.86486 1.43891 1.79468 1.14563 1.23083 0.88069 0.74015 0.84851 1.90662 1.21014 1.44334 1.84941 1.21411 0.98294 1.06024 0.90767 1.21087 0.91265 1.03592 0.83319 1.45972 1.14313 1.72392 1.05882 1.20519 0.89302 0.77109 0.83263 1.90770 1.19868 1.45963 1.83516 1.20687 0.97811 1.04983 0.90746 1.19269 0.98956 0.93978 0.94511 1.20989 0.99525 0.96122 0.95720 1.21109 0.98237 0.98979 0.95472 1.21152 0.99659 0.93106 1.00044 1.21112 0.99482 0.97264 0.95918 1.20998 0.97500 0.98649 0.95171 1.23616 0.99925 0.79118 0.99012 1.89640 1.29749 1.26184 1.86688 1.23818 0.88313 0.95659 0.96806 0.92494 0.93609 0.89941 0.87135 0.87348 0.90349 0.90287 0.76455 0.87765 0.87786 0.86219 0.86087 0.86197 0.86075 0.86195 0.90971 0.90730 0.91109 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.60 12.09 55.43 0.67 -22.93 16 2 C 0.07 1.75 5.36 -17.82 -0.10 1.66 16 3 Si 0.90 19.93 29.54 -169.99 -5.02 14.91 16 4 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.51 -12.66 8.01 -34.44 -0.28 -12.94 16 8 H 0.07 1.61 7.82 -52.49 -0.41 1.20 16 9 C 0.02 0.48 0.76 -155.28 -0.12 0.37 16 10 C 0.11 2.49 4.83 37.16 0.18 2.67 16 11 O -0.33 -6.89 9.79 -39.25 -0.38 -7.28 16 12 C 0.46 8.31 7.96 36.01 0.29 8.59 16 13 O -0.52 -10.96 15.73 -18.75 -0.29 -11.25 16 14 C -0.13 -1.51 5.93 -27.88 -0.17 -1.68 16 15 C 0.13 1.62 4.96 -4.04 -0.02 1.60 16 16 N -0.73 -6.72 5.56 -60.29 -0.33 -7.06 16 17 C 0.51 5.61 7.82 -10.98 -0.09 5.53 16 18 O -0.53 -8.41 16.03 5.56 0.09 -8.32 16 19 C -0.10 -0.73 5.83 -29.04 -0.17 -0.90 16 20 C -0.07 -0.63 4.37 -104.63 -0.46 -1.08 16 21 C -0.11 -0.97 9.70 -39.58 -0.38 -1.35 16 22 C -0.12 -1.04 10.05 -39.58 -0.40 -1.43 16 23 C -0.12 -1.03 10.05 -39.58 -0.40 -1.42 16 24 C -0.12 -1.05 10.05 -39.59 -0.40 -1.45 16 25 C -0.11 -0.99 9.70 -39.58 -0.38 -1.37 16 26 C 0.06 1.39 7.20 24.61 0.18 1.56 16 27 O -0.40 -9.09 12.57 -35.23 -0.44 -9.53 16 28 C 0.03 0.65 7.89 24.60 0.19 0.84 16 29 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.05 1.03 7.96 -51.93 -0.41 0.62 16 31 H 0.08 2.11 7.58 -51.93 -0.39 1.71 16 32 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 35 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 36 H 0.40 2.21 8.47 -40.82 -0.35 1.86 16 37 H 0.10 0.51 8.09 -51.92 -0.42 0.09 16 38 H 0.10 0.49 8.08 -51.93 -0.42 0.07 16 39 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 42 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 44 H 0.07 1.70 8.13 -51.93 -0.42 1.27 16 45 H 0.07 1.73 8.10 -51.93 -0.42 1.31 16 46 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16 47 H 0.06 1.21 8.13 -51.93 -0.42 0.78 16 LS Contribution 404.62 15.07 6.10 6.10 Total: -1.00 -33.18 404.62 -9.16 -42.33 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -7.02 Total: 3.85 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -2.51 Total: -0.81 kcal Atomic # 7 Polarization: -30.33 SS G_CDS: 0.34 Total: -29.99 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -1.03 Total: -36.39 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.18 -9.16 -42.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650486430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.563 kcal (2) G-P(sol) polarization free energy of solvation -33.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds