Wall clock time and date at job start Wed Apr 1 2020 04:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00089 * 2 1 4 4 H 1.48492 * 109.47176 * 239.99837 * 3 2 1 5 5 H 1.48504 * 109.47290 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47210 * 119.99456 * 3 2 1 7 7 C 1.37874 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99797 * 185.64641 * 7 2 1 9 9 C 1.50701 * 120.00285 * 5.65009 * 7 2 1 10 10 C 1.52996 * 113.56592 * 69.37650 * 9 7 2 11 11 O 1.45194 * 109.47204 * 51.06802 * 10 9 7 12 12 C 1.34228 * 117.00110 * 179.97438 * 11 10 9 13 13 O 1.20827 * 120.00255 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00065 * 180.02562 * 12 11 10 15 15 C 1.53002 * 109.47160 * 180.02562 * 14 12 11 16 16 N 1.46500 * 109.46985 * 179.97438 * 15 14 12 17 17 C 1.34784 * 119.99778 * 180.02562 * 16 15 14 18 18 O 1.21282 * 119.99904 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99953 * 180.02562 * 17 16 15 20 20 C 1.50697 * 109.47022 * 179.97438 * 19 17 16 21 21 C 1.38233 * 119.99722 * 269.72492 * 20 19 17 22 22 C 1.38245 * 119.99573 * 179.77014 * 21 20 19 23 23 C 1.38236 * 119.99630 * 0.50262 * 22 21 20 24 24 C 1.38233 * 120.00209 * 359.75285 * 23 22 21 25 25 C 1.38233 * 120.00255 * 359.97438 * 24 23 22 26 26 C 1.53368 * 114.56295 * 295.10507 * 9 7 2 27 27 O 1.43353 * 88.44449 * 220.42122 * 26 9 7 28 28 C 1.43351 * 88.32282 * 28.14968 * 27 26 9 29 29 H 0.97002 * 119.99699 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46747 * 171.07176 * 10 9 7 31 31 H 1.09003 * 109.47138 * 291.06739 * 10 9 7 32 32 H 1.09004 * 109.47086 * 300.00049 * 14 12 11 33 33 H 1.09002 * 109.47276 * 60.00109 * 14 12 11 34 34 H 1.08995 * 109.47123 * 300.00073 * 15 14 12 35 35 H 1.09002 * 109.47132 * 59.99783 * 15 14 12 36 36 H 0.96995 * 120.00283 * 359.97438 * 16 15 14 37 37 H 1.09008 * 109.46953 * 299.99926 * 19 17 16 38 38 H 1.09002 * 109.47276 * 59.99491 * 19 17 16 39 39 H 1.07993 * 120.00162 * 359.97438 * 21 20 19 40 40 H 1.07989 * 119.99738 * 180.23213 * 22 21 20 41 41 H 1.08004 * 119.99569 * 179.72464 * 23 22 21 42 42 H 1.08001 * 119.99451 * 179.97438 * 24 23 22 43 43 H 1.08000 * 119.99931 * 179.97438 * 25 24 23 44 44 H 1.08993 * 113.39616 * 105.52216 * 26 9 7 45 45 H 1.09001 * 113.39265 * 335.31729 * 26 9 7 46 46 H 1.09002 * 113.38799 * 86.74776 * 28 27 26 47 47 H 1.08992 * 113.39212 * 216.90865 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0806 -1.1963 0.0926 9 6 1.2565 -2.4961 -0.1274 10 6 0.6381 -2.7130 -1.5099 11 8 1.6496 -2.5051 -2.5306 12 6 1.2669 -2.6588 -3.8079 13 8 0.1244 -2.9566 -4.0647 14 6 2.2622 -2.4598 -4.9219 15 6 1.5740 -2.6925 -6.2684 16 7 2.5415 -2.4985 -7.3512 17 6 2.1569 -2.6516 -8.6339 18 8 1.0101 -2.9505 -8.8916 19 6 3.1522 -2.4526 -9.7479 20 6 2.4743 -2.6817 -11.0741 21 6 2.4585 -3.9459 -11.6330 22 6 1.8325 -4.1569 -12.8474 23 6 1.2313 -3.1017 -13.5076 24 6 1.2517 -1.8365 -12.9511 25 6 1.8728 -1.6265 -11.7342 26 6 0.3211 -2.8119 1.0463 27 8 0.7469 -4.1784 0.9670 28 6 1.9961 -3.7146 0.4386 29 1 -0.4850 0.8401 -0.0004 30 1 0.2542 -3.7307 -1.5805 31 1 -0.1781 -2.0057 -1.6578 32 1 2.6512 -1.4423 -4.8841 33 1 3.0834 -3.1673 -4.8061 34 1 1.1847 -3.7098 -6.3064 35 1 0.7530 -1.9848 -6.3839 36 1 3.4585 -2.2591 -7.1452 37 1 3.5419 -1.4353 -9.7095 38 1 3.9729 -3.1606 -9.6326 39 1 2.9324 -4.7693 -11.1195 40 1 1.8169 -5.1453 -13.2822 41 1 0.7461 -3.2657 -14.4585 42 1 0.7823 -1.0120 -13.4673 43 1 1.8890 -0.6379 -11.2997 44 1 -0.7335 -2.6727 0.8087 45 1 0.6115 -2.3213 1.9753 46 1 2.7238 -3.4597 1.2091 47 1 2.4093 -4.3666 -0.3307 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650486430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:41 Heat of formation + Delta-G solvation = -134.733473 kcal Electronic energy + Delta-G solvation = -29095.644916 eV Core-core repulsion = 24822.829808 eV Total energy + Delta-G solvation = -4272.815107 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.80902 -41.20916 -40.88501 -39.61944 -37.56779 -36.26397 -34.94626 -33.89768 -32.39738 -31.74855 -31.63738 -28.73730 -27.47649 -26.89001 -26.37247 -24.97668 -23.46361 -22.66074 -21.84736 -21.18512 -20.54398 -18.92163 -18.53497 -18.12109 -17.73927 -17.67916 -17.15083 -16.98147 -16.75211 -16.66157 -16.29161 -16.00356 -15.91735 -15.75845 -15.65174 -15.01951 -14.76588 -14.26218 -14.16192 -14.06463 -13.86925 -13.66739 -13.35724 -13.26817 -13.04276 -12.95468 -12.87233 -12.77012 -12.52345 -12.50056 -12.35237 -11.99095 -11.84894 -11.62976 -11.57067 -11.04889 -10.92030 -10.84229 -10.57947 -10.41074 -10.18317 -9.78259 -9.61756 -8.14748 -6.24430 0.42816 0.53843 1.24119 1.47512 1.48466 1.55525 1.61639 1.63716 2.36478 2.45504 2.95861 3.15724 3.32636 3.50469 3.70225 3.77343 3.96368 4.00189 4.07470 4.08947 4.18136 4.19925 4.29397 4.39223 4.42522 4.45884 4.61430 4.62300 4.67067 4.68102 4.74479 4.79555 4.80802 4.88131 4.95600 5.15010 5.18049 5.23100 5.33630 5.37191 5.41963 5.57762 5.64367 5.67970 5.70158 5.77067 6.14833 6.19494 6.55413 6.75691 6.82471 7.27349 7.43627 8.93203 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.017324 B = 0.001823 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.879969 B =15356.795143 C =16276.894044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.023 3.977 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.269 1.269 7 C -0.509 4.509 8 H 0.070 0.930 9 C 0.005 3.995 10 C 0.120 3.880 11 O -0.336 6.336 12 C 0.450 3.550 13 O -0.556 6.556 14 C -0.108 4.108 15 C 0.139 3.861 16 N -0.713 5.713 17 C 0.510 3.490 18 O -0.584 6.584 19 C -0.093 4.093 20 C -0.084 4.084 21 C -0.122 4.122 22 C -0.133 4.133 23 C -0.133 4.133 24 C -0.134 4.134 25 C -0.124 4.124 26 C 0.064 3.936 27 O -0.409 6.409 28 C 0.040 3.960 29 H 0.262 0.738 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.137 0.863 33 H 0.149 0.851 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.424 0.576 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.132 0.868 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.129 0.871 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.461 -3.292 -22.149 25.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.177 4.177 3 Si 0.779 3.221 4 H -0.191 1.191 5 H -0.220 1.220 6 H -0.194 1.194 7 C -0.547 4.547 8 H 0.088 0.912 9 C 0.004 3.996 10 C 0.046 3.954 11 O -0.250 6.250 12 C 0.295 3.705 13 O -0.448 6.448 14 C -0.146 4.146 15 C 0.014 3.986 16 N -0.368 5.368 17 C 0.298 3.702 18 O -0.464 6.464 19 C -0.132 4.132 20 C -0.084 4.084 21 C -0.140 4.140 22 C -0.151 4.151 23 C -0.151 4.151 24 C -0.152 4.152 25 C -0.142 4.142 26 C -0.013 4.013 27 O -0.329 6.329 28 C -0.036 4.036 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.155 0.845 33 H 0.167 0.833 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.262 0.738 37 H 0.151 0.849 38 H 0.154 0.846 39 H 0.150 0.850 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.154 0.846 43 H 0.147 0.853 44 H 0.077 0.923 45 H 0.090 0.910 46 H 0.103 0.897 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.045 -3.731 -22.265 25.132 hybrid contribution -0.287 1.123 0.437 1.239 sum 10.758 -2.608 -21.828 24.475 Atomic orbital electron populations 1.70037 1.07279 1.27647 1.50485 1.25680 0.95494 1.02275 0.94264 0.85680 0.78367 0.78873 0.79198 1.19119 1.22009 1.19362 1.20915 0.93629 0.89687 1.50471 0.91229 1.20527 0.94218 0.95405 0.89432 1.22444 0.88886 0.97842 0.86277 1.86488 1.43104 1.79956 1.15498 1.24334 0.88861 0.72442 0.84891 1.90653 1.23114 1.45924 1.85115 1.21479 0.97125 1.08652 0.87302 1.20762 0.91492 1.01593 0.84716 1.45741 1.14813 1.71531 1.04675 1.21250 0.89139 0.75630 0.84181 1.90753 1.22563 1.48685 1.84354 1.20745 0.97043 1.07589 0.87791 1.19590 0.99272 0.94055 0.95499 1.21292 0.99919 0.96639 0.96183 1.21435 0.98075 0.99946 0.95605 1.21467 0.99657 0.93052 1.00884 1.21422 0.99552 0.98062 0.96118 1.21284 0.97906 0.99341 0.95685 1.23494 0.99225 0.79544 0.99021 1.89630 1.30700 1.25714 1.86829 1.23858 0.87812 0.94607 0.97355 0.92939 0.93819 0.93378 0.84497 0.83324 0.92398 0.93191 0.73764 0.84926 0.84650 0.85041 0.84441 0.84379 0.84607 0.85336 0.92328 0.90960 0.89672 0.89905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.45 12.09 21.45 0.26 -49.19 16 2 C 0.02 1.16 5.36 84.65 0.45 1.61 16 3 Si 0.95 40.12 29.54 68.60 2.03 42.15 16 4 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 5 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 7 C -0.51 -25.04 8.01 25.60 0.20 -24.83 16 8 H 0.07 3.30 7.82 -2.91 -0.02 3.27 16 9 C 0.00 0.23 0.76 -52.68 -0.04 0.19 16 10 C 0.12 5.59 4.83 71.98 0.35 5.94 16 11 O -0.34 -13.79 9.79 -51.40 -0.50 -14.29 16 12 C 0.45 16.06 7.96 71.24 0.57 16.63 16 13 O -0.56 -24.07 15.73 21.96 0.35 -23.72 16 14 C -0.11 -2.29 5.93 29.85 0.18 -2.11 16 15 C 0.14 3.31 4.96 86.38 0.43 3.74 16 16 N -0.71 -11.34 5.56 -463.05 -2.57 -13.92 16 17 C 0.51 10.40 7.82 87.66 0.69 11.09 16 18 O -0.58 -18.88 16.03 -3.04 -0.05 -18.93 16 19 C -0.09 -1.08 5.83 29.10 0.17 -0.91 16 20 C -0.08 -1.47 4.37 -19.87 -0.09 -1.56 16 21 C -0.12 -2.13 9.70 22.27 0.22 -1.92 16 22 C -0.13 -2.20 10.05 22.27 0.22 -1.97 16 23 C -0.13 -2.15 10.05 22.27 0.22 -1.93 16 24 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 25 C -0.12 -2.24 9.70 22.27 0.22 -2.02 16 26 C 0.06 2.98 7.20 63.85 0.46 3.44 16 27 O -0.41 -18.15 12.57 -148.98 -1.87 -20.02 16 28 C 0.04 1.61 7.89 63.85 0.50 2.12 16 29 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 30 H 0.04 2.01 7.96 -2.38 -0.02 1.99 16 31 H 0.05 2.55 7.58 -2.39 -0.02 2.54 16 32 H 0.14 2.30 8.14 -2.38 -0.02 2.28 16 33 H 0.15 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.06 1.63 8.10 -2.39 -0.02 1.61 16 35 H 0.05 1.49 8.10 -2.39 -0.02 1.47 16 36 H 0.42 2.89 8.47 -92.71 -0.79 2.10 16 37 H 0.13 0.80 8.09 -2.38 -0.02 0.78 16 38 H 0.14 0.73 8.08 -2.39 -0.02 0.71 16 39 H 0.13 1.83 8.06 -2.91 -0.02 1.80 16 40 H 0.14 1.66 8.06 -2.92 -0.02 1.64 16 41 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 42 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 43 H 0.13 1.93 8.06 -2.91 -0.02 1.91 16 44 H 0.06 2.85 8.13 -2.39 -0.02 2.83 16 45 H 0.07 3.36 8.10 -2.39 -0.02 3.34 16 46 H 0.09 3.19 8.10 -2.39 -0.02 3.17 16 47 H 0.08 2.99 8.13 -2.39 -0.02 2.97 16 Total: -1.00 -74.72 404.62 2.80 -71.92 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.19 Total: 20.57 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 4.97 Total: 5.45 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: -2.31 Total: -63.11 kcal Atomic # 8 Polarization: -74.89 SS G_CDS: -2.08 Total: -76.97 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.15 kcal Total: -74.72 2.80 -71.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650486430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.818 kcal (2) G-P(sol) polarization free energy of solvation -74.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds