Wall clock time and date at job start Wed Apr 1 2020 04:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.33813 * 122.73728 * 2 1 4 4 O 1.21226 * 125.30391 * 359.97438 * 3 2 1 5 5 C 1.51208 * 109.38513 * 179.97438 * 3 2 1 6 6 H 1.09000 * 113.23723 * 122.46943 * 5 3 2 7 7 C 1.54703 * 109.04515 * 249.00242 * 5 3 2 8 8 N 1.48102 * 104.53612 * 134.36031 * 7 5 3 9 9 C 1.34777 * 127.85114 * 140.12327 * 8 7 5 10 10 O 1.21589 * 120.00263 * 179.68353 * 9 8 7 11 11 N 1.34777 * 119.99754 * 359.68141 * 9 8 7 12 12 C 1.40193 * 119.99728 * 179.97438 * 11 9 8 13 13 C 1.40401 * 125.97600 * 0.02562 * 12 11 9 14 14 C 1.35244 * 107.86868 * 179.97438 * 13 12 11 15 15 N 1.34965 * 107.85999 * 359.97438 * 14 13 12 16 16 C 1.46493 * 125.97624 * 179.97438 * 15 14 13 17 17 C 1.50710 * 109.46991 * 125.02899 * 16 15 14 18 18 H 1.08002 * 119.99873 * 0.02562 * 17 16 15 19 19 C 1.37869 * 120.00276 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99950 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00357 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47338 * 89.99689 * 21 19 17 23 23 H 1.48500 * 109.47603 * 210.00114 * 21 19 17 24 24 H 1.48507 * 109.47124 * 330.00106 * 21 19 17 25 25 N 1.31214 * 125.96986 * 179.97438 * 12 11 9 26 26 C 1.48110 * 104.30229 * 319.86573 * 8 7 5 27 27 C 1.54297 * 104.73516 * 40.09049 * 26 8 7 28 28 H 1.08993 * 112.67537 * 99.10380 * 27 26 8 29 29 C 1.35333 * 122.51913 * 180.30801 * 2 1 3 30 30 O 1.21226 * 126.14163 * 0.05836 * 29 2 1 31 31 H 1.08998 * 109.47028 * 90.00680 * 1 2 3 32 32 H 1.09002 * 109.46986 * 210.00133 * 1 2 3 33 33 H 1.08997 * 109.47725 * 329.99976 * 1 2 3 34 34 H 1.08995 * 110.52576 * 15.59065 * 7 5 3 35 35 H 1.09005 * 110.44324 * 253.08350 * 7 5 3 36 36 H 0.96999 * 119.99686 * 0.02562 * 11 9 8 37 37 H 1.07997 * 126.06422 * 359.96063 * 13 12 11 38 38 H 1.07998 * 126.07118 * 179.97438 * 14 13 12 39 39 H 1.09003 * 109.47538 * 245.02631 * 16 15 14 40 40 H 1.08999 * 109.47417 * 5.03540 * 16 15 14 41 41 H 0.96997 * 120.00114 * 180.02562 * 20 19 17 42 42 H 1.09002 * 110.38073 * 158.89999 * 26 8 7 43 43 H 1.08989 * 110.38459 * 281.15542 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1886 1.1256 0.0000 4 8 1.7353 2.2499 -0.0004 5 6 3.6598 0.7764 0.0006 6 1 4.2028 1.2000 -0.8443 7 6 4.2715 1.1700 1.3660 8 7 5.0923 0.0007 1.7566 9 6 6.3053 0.0009 2.3440 10 8 6.8525 -1.0520 2.6093 11 7 6.9117 1.1682 2.6375 12 6 8.1732 1.1683 3.2490 13 6 8.9155 0.0322 3.6089 14 6 10.0724 0.4527 4.1691 15 7 10.0674 1.8024 4.1657 16 6 11.1309 2.6682 4.6809 17 6 11.5698 3.6222 3.5999 18 1 11.1029 3.5873 2.6266 19 6 12.5673 4.5395 3.8533 20 7 13.1355 4.5824 5.0386 21 14 13.1119 5.7215 2.5133 22 1 12.2964 6.9605 2.5847 23 1 14.5450 6.0604 2.7045 24 1 12.9271 5.0832 1.1852 25 7 8.8670 2.2304 3.5843 26 6 4.2745 -1.1690 1.3607 27 6 3.6600 -0.7762 0.0010 28 1 4.2029 -1.2001 -0.8437 29 6 2.1925 -1.1411 -0.0061 30 8 1.7514 -2.2703 -0.0132 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8899 0.5138 34 1 3.4856 1.3446 2.1008 35 1 4.8982 2.0557 1.2613 36 1 6.4749 2.0081 2.4262 37 1 8.6157 -0.9952 3.4642 38 1 10.8604 -0.1792 4.5513 39 1 10.7575 3.2336 5.5347 40 1 11.9781 2.0572 4.9921 41 1 13.8371 5.2280 5.2171 42 1 4.9034 -2.0526 1.2520 43 1 3.4903 -1.3502 2.0956 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669261980.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:37 Heat of formation + Delta-G solvation = 21.036919 kcal Electronic energy + Delta-G solvation = -29571.693827 eV Core-core repulsion = 25234.385839 eV Total energy + Delta-G solvation = -4337.307989 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.81146 -40.78807 -39.74962 -39.21961 -37.66869 -36.18247 -34.84446 -33.45588 -32.73895 -30.92040 -30.05426 -29.32069 -28.21351 -26.67632 -25.12495 -24.89512 -22.99863 -21.93126 -21.34800 -20.49587 -20.20875 -19.45601 -18.34797 -17.78462 -17.17108 -16.95304 -16.68292 -16.57651 -16.11173 -15.89272 -15.28366 -15.16251 -15.03083 -14.55285 -14.40768 -14.38097 -14.05555 -13.72961 -13.67491 -13.41193 -13.14655 -12.84016 -12.57663 -12.34707 -12.25104 -12.20855 -12.00381 -11.80633 -11.23350 -11.06589 -10.91017 -10.58932 -10.50120 -10.37619 -10.27659 -10.18524 -9.77359 -9.52469 -9.29650 -8.64453 -8.15676 -7.47257 -6.25371 -4.30465 0.85061 1.72301 1.96894 2.16530 2.56756 2.99675 3.10753 3.22935 3.26865 3.28874 3.34115 3.48103 3.51030 3.71672 3.94272 4.05870 4.30118 4.32124 4.49000 4.54897 4.59888 4.74264 4.81495 4.90888 5.08993 5.09804 5.10636 5.14636 5.20031 5.41728 5.56035 5.75875 6.12731 6.19640 6.48824 6.52478 6.64001 6.73564 6.92943 7.06181 7.12730 7.40806 7.65596 7.72593 7.89127 8.03234 8.39510 8.61416 8.78925 9.35188 10.83345 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.018919 B = 0.002080 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.659238 B =13460.666915 C =14503.897393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.580 5.580 3 C 0.537 3.463 4 O -0.470 6.470 5 C -0.133 4.133 6 H 0.147 0.853 7 C 0.115 3.885 8 N -0.639 5.639 9 C 0.742 3.258 10 O -0.555 6.555 11 N -0.639 5.639 12 C 0.273 3.727 13 C -0.286 4.286 14 C 0.053 3.947 15 N -0.319 5.319 16 C 0.258 3.742 17 C -0.528 4.528 18 H 0.069 0.931 19 C 0.061 3.939 20 N -0.895 5.895 21 Si 0.908 3.092 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.273 1.273 25 N -0.305 5.305 26 C 0.144 3.856 27 C -0.138 4.138 28 H 0.146 0.854 29 C 0.540 3.460 30 O -0.463 6.463 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.407 0.593 37 H 0.161 0.839 38 H 0.168 0.832 39 H 0.045 0.955 40 H 0.057 0.943 41 H 0.267 0.733 42 H 0.108 0.892 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.231 -10.393 -10.100 27.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.324 5.324 3 C 0.325 3.675 4 O -0.340 6.340 5 C -0.156 4.156 6 H 0.165 0.835 7 C -0.009 4.009 8 N -0.378 5.378 9 C 0.443 3.557 10 O -0.429 6.429 11 N -0.289 5.289 12 C 0.020 3.980 13 C -0.318 4.318 14 C -0.097 4.097 15 N -0.101 5.101 16 C 0.141 3.859 17 C -0.566 4.566 18 H 0.087 0.913 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.735 3.265 22 H -0.203 1.203 23 H -0.210 1.210 24 H -0.197 1.197 25 N -0.136 5.136 26 C 0.020 3.980 27 C -0.160 4.160 28 H 0.164 0.836 29 C 0.328 3.672 30 O -0.333 6.333 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.117 0.883 36 H 0.242 0.758 37 H 0.178 0.822 38 H 0.186 0.814 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.127 0.873 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -22.946 -9.738 -9.639 26.725 hybrid contribution -0.057 0.409 -0.866 0.959 sum -23.002 -9.329 -10.505 26.953 Atomic orbital electron populations 1.21983 0.76691 1.04924 1.03891 1.46967 1.09843 1.09019 1.66588 1.20432 0.89282 0.83789 0.74029 1.90820 1.77401 1.21054 1.44752 1.23201 0.93944 0.95733 1.02680 0.83530 1.22239 0.95504 0.90478 0.92656 1.47903 1.17206 1.07717 1.65021 1.14894 0.78788 0.83823 0.78173 1.90907 1.63605 1.30323 1.58110 1.41320 1.17219 1.07910 1.62418 1.18743 0.86315 0.93433 0.99552 1.21494 0.96062 0.99809 1.14390 1.22562 0.99515 0.85829 1.01835 1.49074 1.13473 1.04633 1.42886 1.19754 0.81451 0.89290 0.95440 1.21249 1.19710 1.17157 0.98524 0.91304 1.24947 0.95796 0.97273 0.96114 1.69916 1.25920 1.36430 1.21065 0.86323 0.77684 0.80849 0.81605 1.20345 1.20997 1.19733 1.77332 0.95829 1.19770 1.20685 1.21881 0.94422 0.90236 0.91427 1.23190 0.93911 0.95731 1.03177 0.83643 1.20843 0.89109 0.83718 0.73565 1.90812 1.78010 1.20234 1.44208 0.90763 0.89316 0.89239 0.89857 0.88251 0.75788 0.82187 0.81442 0.93714 0.92477 0.92322 0.87331 0.90329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.30 10.59 59.85 0.63 0.94 16 2 N -0.58 -3.55 2.99 -122.43 -0.37 -3.91 16 3 C 0.54 3.59 7.07 -11.17 -0.08 3.51 16 4 O -0.47 -4.55 17.47 5.60 0.10 -4.45 16 5 C -0.13 -0.65 4.20 -89.43 -0.38 -1.03 16 6 H 0.15 0.46 8.14 -51.93 -0.42 0.04 16 7 C 0.12 0.72 6.48 -2.26 -0.01 0.70 16 8 N -0.64 -5.79 3.31 -174.95 -0.58 -6.37 16 9 C 0.74 10.15 8.54 -86.92 -0.74 9.41 16 10 O -0.56 -9.40 13.73 5.29 0.07 -9.33 16 11 N -0.64 -9.42 5.43 -15.51 -0.08 -9.50 16 12 C 0.27 5.30 8.11 -154.36 -1.25 4.05 16 13 C -0.29 -5.52 9.61 -39.83 -0.38 -5.90 16 14 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 15 N -0.32 -7.26 3.67 -62.56 -0.23 -7.48 16 16 C 0.26 6.45 6.26 -5.19 -0.03 6.42 16 17 C -0.53 -14.47 9.24 -34.44 -0.32 -14.79 16 18 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -25.07 13.29 55.43 0.74 -24.33 16 21 Si 0.91 21.12 29.54 -169.99 -5.02 16.10 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 N -0.31 -6.83 12.42 31.44 0.39 -6.44 16 26 C 0.14 1.02 6.58 -2.48 -0.02 1.00 16 27 C -0.14 -0.69 4.13 -89.64 -0.37 -1.06 16 28 H 0.15 0.49 8.14 -51.93 -0.42 0.06 16 29 C 0.54 3.58 7.14 -10.48 -0.07 3.50 16 30 O -0.46 -4.39 17.56 5.60 0.10 -4.29 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.09 0.37 7.87 -51.93 -0.41 -0.04 16 33 H 0.09 0.39 7.82 -51.93 -0.41 -0.02 16 34 H 0.08 0.48 7.73 -51.93 -0.40 0.08 16 35 H 0.10 0.54 6.85 -51.93 -0.36 0.18 16 36 H 0.41 4.87 7.21 -40.82 -0.29 4.57 16 37 H 0.16 3.01 5.91 -52.49 -0.31 2.70 16 38 H 0.17 2.65 8.06 -52.49 -0.42 2.23 16 39 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 41 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.11 0.84 7.87 -51.93 -0.41 0.43 16 43 H 0.08 0.53 7.73 -51.93 -0.40 0.12 16 LS Contribution 369.39 15.07 5.57 5.57 Total: -1.00 -35.35 369.39 -7.70 -43.05 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -5.06 Total: 2.24 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: -3.32 Total: 9.16 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: -0.13 Total: -58.04 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: 0.27 Total: -18.07 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.35 -7.70 -43.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669261980.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.083 kcal (2) G-P(sol) polarization free energy of solvation -35.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds