Wall clock time and date at job start Wed Apr 1 2020 04:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40203 * 126.59395 * 2 1 4 4 N 1.28767 * 108.36773 * 179.88089 * 3 2 1 5 5 C 1.34404 * 109.52070 * 0.38615 * 4 3 2 6 6 C 1.47514 * 125.77215 * 179.74708 * 5 4 3 7 7 O 1.21598 * 120.00357 * 180.02562 * 6 5 4 8 8 N 1.34779 * 119.99898 * 0.02562 * 6 5 4 9 9 C 1.46505 * 119.99897 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47335 * 35.00050 * 9 8 6 11 11 C 1.53000 * 109.46830 * 154.99492 * 9 8 6 12 12 N 1.46500 * 109.47534 * 304.99939 * 11 9 8 13 13 C 1.36935 * 119.99834 * 179.97438 * 12 11 9 14 14 H 1.08001 * 120.00510 * 0.02562 * 13 12 11 15 15 C 1.38819 * 119.99669 * 180.02562 * 13 12 11 16 16 N 1.31614 * 120.00147 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99613 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47515 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47035 * 120.00045 * 17 15 13 20 20 H 1.48499 * 109.46775 * 239.99758 * 17 15 13 21 21 C 1.53000 * 109.47263 * 274.99730 * 9 8 6 22 22 C 1.53001 * 117.49554 * 128.74684 * 21 9 8 23 23 C 1.52998 * 117.49827 * 60.08667 * 21 9 8 24 24 C 1.34808 * 126.59290 * 180.31955 * 2 1 3 25 25 C 1.50707 * 126.58255 * 359.91966 * 24 2 1 26 26 F 1.39900 * 109.46575 * 30.03000 * 25 24 2 27 27 F 1.39901 * 109.47274 * 150.02599 * 25 24 2 28 28 F 1.39895 * 109.47046 * 270.03078 * 25 24 2 29 29 H 1.08999 * 109.46892 * 269.68778 * 1 2 3 30 30 H 1.09000 * 109.46803 * 29.67951 * 1 2 3 31 31 H 1.09000 * 109.47214 * 149.68744 * 1 2 3 32 32 H 0.96996 * 119.99991 * 359.97438 * 8 6 5 33 33 H 1.09001 * 109.46861 * 65.00619 * 11 9 8 34 34 H 1.09001 * 109.47122 * 184.99792 * 11 9 8 35 35 H 0.96998 * 120.00037 * 0.02562 * 12 11 9 36 36 H 0.96999 * 120.00406 * 180.02562 * 16 15 13 37 37 H 1.09003 * 115.54936 * 274.41947 * 21 9 8 38 38 H 1.08997 * 117.50359 * 0.02562 * 22 21 9 39 39 H 1.09004 * 117.49499 * 145.02630 * 22 21 9 40 40 H 1.08996 * 117.50243 * 214.97916 * 23 21 9 41 41 H 1.09006 * 117.49840 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.3009 1.1257 0.0000 4 7 3.5239 0.7229 0.0025 5 6 3.5543 -0.6208 -0.0043 6 6 4.7704 -1.4558 -0.0093 7 8 4.6755 -2.6680 -0.0158 8 7 5.9866 -0.8750 -0.0066 9 6 7.1943 -1.7043 -0.0110 10 1 7.0172 -2.6010 -0.6049 11 6 8.3546 -0.9122 -0.6170 12 7 7.9738 -0.4279 -1.9461 13 6 8.8586 0.3115 -2.6848 14 1 9.8373 0.5372 -2.2878 15 6 8.4975 0.7709 -3.9440 16 7 7.3047 0.4963 -4.4277 17 14 9.7048 1.7789 -4.9519 18 1 10.9677 1.9467 -4.1891 19 1 9.9885 1.0783 -6.2301 20 1 9.1179 3.1127 -5.2382 21 6 7.5439 -2.1039 1.4240 22 6 7.7825 -3.5887 1.7056 23 6 6.5049 -2.9100 2.2059 24 6 2.2687 -1.0823 -0.0060 25 6 1.8325 -2.5249 -0.0124 26 9 0.6037 -2.6375 -0.6717 27 9 2.7904 -3.2989 -0.6761 28 9 1.6983 -2.9773 1.3046 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 0.8929 -0.5089 31 1 -0.3633 -0.8872 -0.5187 32 1 6.0623 0.0920 -0.0017 33 1 8.5899 -0.0637 0.0254 34 1 9.2294 -1.5570 -0.7021 35 1 7.0947 -0.6302 -2.3026 36 1 7.0525 0.8170 -5.3077 37 1 8.1441 -1.3833 1.9796 38 1 7.6908 -4.2808 0.8686 39 1 8.5394 -3.8450 2.4469 40 1 6.4218 -2.7202 3.2760 41 1 5.5720 -3.1553 1.6981 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670527245.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:10 Heat of formation + Delta-G solvation = -55.261493 kcal Electronic energy + Delta-G solvation = -31936.225958 eV Core-core repulsion = 27053.752682 eV Total energy + Delta-G solvation = -4882.473276 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.44396 -49.01769 -48.80551 -43.71460 -40.98357 -38.42470 -36.61196 -36.15349 -34.97335 -33.28074 -32.87822 -30.09236 -28.91421 -27.62377 -26.00685 -24.96301 -23.37764 -23.11380 -22.99678 -22.03289 -21.29563 -19.88166 -19.84329 -19.53120 -19.22519 -18.71837 -17.66674 -17.48509 -16.88299 -16.63700 -16.55457 -15.93215 -15.84575 -15.62920 -15.47797 -15.26500 -15.23560 -15.05159 -14.94415 -14.92040 -14.63376 -14.49731 -14.23697 -13.97823 -13.67240 -13.17666 -13.10727 -12.82885 -12.70763 -12.67252 -12.44881 -12.25899 -12.02271 -11.83577 -11.80365 -11.37475 -11.12072 -10.98540 -10.91873 -10.79268 -9.99844 -8.99892 -7.92808 -5.22308 -0.67724 0.27857 0.38686 1.24844 1.49042 1.49539 1.59716 1.87844 1.97631 2.18294 2.57006 2.59093 2.90576 2.98079 3.03031 3.23668 3.42290 3.55113 3.60118 3.95196 4.05076 4.15456 4.16209 4.21214 4.34327 4.40638 4.48141 4.49826 4.66812 4.82988 4.87055 4.91524 5.08699 5.13098 5.32916 5.36095 5.51230 5.54205 6.26231 6.27620 6.51921 7.02124 7.35032 8.08286 8.31807 9.30686 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.010605 B = 0.003826 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.559762 B = 7316.334152 C = 8916.659428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.307 5.307 3 N -0.038 5.038 4 N -0.216 5.216 5 C -0.044 4.044 6 C 0.592 3.408 7 O -0.535 6.535 8 N -0.685 5.685 9 C 0.179 3.821 10 H 0.071 0.929 11 C 0.149 3.851 12 N -0.744 5.744 13 C -0.241 4.241 14 H 0.081 0.919 15 C -0.074 4.074 16 N -0.970 5.970 17 Si 0.973 3.027 18 H -0.263 1.263 19 H -0.296 1.296 20 H -0.295 1.295 21 C -0.168 4.168 22 C -0.158 4.158 23 C -0.183 4.183 24 C 0.002 3.998 25 C 0.556 3.444 26 F -0.159 7.159 27 F -0.138 7.138 28 F -0.157 7.157 29 H 0.128 0.872 30 H 0.133 0.867 31 H 0.123 0.877 32 H 0.410 0.590 33 H 0.039 0.961 34 H 0.044 0.956 35 H 0.373 0.627 36 H 0.249 0.751 37 H 0.120 0.880 38 H 0.086 0.914 39 H 0.116 0.884 40 H 0.102 0.898 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.788 -5.465 15.497 22.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.093 5.093 3 N -0.018 5.018 4 N -0.087 5.087 5 C -0.187 4.187 6 C 0.375 3.625 7 O -0.412 6.412 8 N -0.333 5.333 9 C 0.075 3.925 10 H 0.089 0.911 11 C 0.023 3.977 12 N -0.387 5.387 13 C -0.372 4.372 14 H 0.099 0.901 15 C -0.267 4.267 16 N -0.621 5.621 17 Si 0.802 3.198 18 H -0.187 1.187 19 H -0.224 1.224 20 H -0.223 1.223 21 C -0.188 4.188 22 C -0.195 4.195 23 C -0.220 4.220 24 C -0.139 4.139 25 C 0.498 3.502 26 F -0.140 7.140 27 F -0.119 7.119 28 F -0.138 7.138 29 H 0.146 0.854 30 H 0.152 0.848 31 H 0.141 0.859 32 H 0.246 0.754 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.205 0.795 36 H 0.058 0.942 37 H 0.138 0.862 38 H 0.105 0.895 39 H 0.134 0.866 40 H 0.120 0.880 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.667 -4.712 15.479 22.522 hybrid contribution -0.015 -0.069 -1.146 1.148 sum -15.682 -4.781 14.333 21.777 Atomic orbital electron populations 1.23279 0.68245 1.09081 1.08178 1.50692 1.10988 1.02701 1.44962 1.82024 0.93451 1.05818 1.20500 1.74795 1.13357 1.09465 1.11059 1.21422 0.93793 0.90756 1.12708 1.16812 0.82253 0.86503 0.76944 1.90816 1.86304 1.12813 1.51263 1.45741 1.04491 1.11287 1.71814 1.20722 0.83237 0.93572 0.95017 0.91105 1.21066 0.94728 0.95997 0.85929 1.42533 1.16676 1.63690 1.15778 1.19684 0.96383 1.23879 0.97303 0.90107 1.25552 0.98580 1.03331 0.99189 1.69845 1.21308 1.52343 1.18568 0.85081 0.78690 0.77627 0.78398 1.18708 1.22364 1.22279 1.22554 1.05024 0.95976 0.95246 1.22987 0.99851 0.93227 1.03442 1.23208 0.94820 1.03909 1.00062 1.21649 0.92322 0.90920 1.09039 1.16695 0.75315 0.82959 0.75210 1.93177 1.43545 1.96224 1.81053 1.93452 1.62559 1.75579 1.80329 1.93278 1.95517 1.89839 1.35162 0.85356 0.84832 0.85926 0.75391 0.94325 0.93804 0.79481 0.94242 0.86173 0.89536 0.86614 0.87962 0.88644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.43 11.24 127.77 1.44 1.87 16 2 N -0.31 -6.49 4.03 -355.08 -1.43 -7.92 16 3 N -0.04 -1.05 13.78 37.02 0.51 -0.54 16 4 N -0.22 -7.10 12.04 -50.00 -0.60 -7.70 16 5 C -0.04 -1.42 6.96 40.81 0.28 -1.13 16 6 C 0.59 20.61 7.10 86.69 0.62 21.23 16 7 O -0.53 -19.48 10.07 -4.02 -0.04 -19.52 16 8 N -0.68 -23.79 4.50 -445.70 -2.00 -25.79 16 9 C 0.18 6.08 2.43 44.99 0.11 6.19 16 10 H 0.07 2.72 7.33 -2.39 -0.02 2.70 16 11 C 0.15 5.80 5.80 86.38 0.50 6.30 16 12 N -0.74 -37.60 5.43 -343.44 -1.87 -39.47 16 13 C -0.24 -13.35 9.99 84.04 0.84 -12.51 16 14 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 15 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 16 N -0.97 -60.43 13.06 21.65 0.28 -60.14 16 17 Si 0.97 46.51 29.55 68.60 2.03 48.54 16 18 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 20 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 21 C -0.17 -4.55 5.36 -10.79 -0.06 -4.61 16 22 C -0.16 -3.78 10.18 30.62 0.31 -3.47 16 23 C -0.18 -4.74 9.74 30.62 0.30 -4.44 16 24 C 0.00 0.05 6.46 41.72 0.27 0.32 16 25 C 0.56 13.06 3.24 71.24 0.23 13.29 16 26 F -0.16 -2.85 14.67 44.97 0.66 -2.19 16 27 F -0.14 -4.18 13.42 44.97 0.60 -3.58 16 28 F -0.16 -3.47 17.30 44.97 0.78 -2.69 16 29 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.12 0.82 5.69 -2.39 -0.01 0.80 16 32 H 0.41 14.64 8.29 -92.71 -0.77 13.88 16 33 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.37 20.62 7.33 -92.71 -0.68 19.94 16 36 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 37 H 0.12 2.90 8.11 -2.39 -0.02 2.88 16 38 H 0.09 2.25 8.05 -2.39 -0.02 2.23 16 39 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.10 2.94 5.02 -2.38 -0.01 2.93 16 Total: -1.00 -71.22 357.99 3.90 -67.32 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: -0.32 Total: 34.48 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: 5.31 Total: 19.20 kcal Atomic # 7 Polarization: -136.45 SS G_CDS: -5.11 Total: -141.56 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.04 Total: -19.52 kcal Atomic # 9 Polarization: -10.50 SS G_CDS: 2.04 Total: -8.46 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -71.22 3.90 -67.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670527245.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.057 kcal (2) G-P(sol) polarization free energy of solvation -71.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds