Wall clock time and date at job start Wed Apr 1 2020 05:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86797 * 119.99559 * 2 1 4 4 H 1.48504 * 109.47024 * 269.99562 * 3 2 1 5 5 H 1.48502 * 109.47286 * 29.99816 * 3 2 1 6 6 H 1.48503 * 109.47202 * 149.99851 * 3 2 1 7 7 C 1.38798 * 120.00421 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00046 * 180.02562 * 7 2 1 9 9 S 1.76206 * 119.99843 * 359.97438 * 7 2 1 10 10 C 1.80993 * 99.99805 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47045 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00156 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99985 * 180.02562 * 11 10 9 14 14 C 1.47152 * 120.68261 * 359.72210 * 13 11 10 15 15 C 1.53892 * 108.04583 * 132.91045 * 14 13 11 16 16 H 1.09007 * 112.60843 * 182.32242 * 15 14 13 17 17 C 1.54544 * 107.81130 * 306.64373 * 15 14 13 18 18 C 1.55850 * 105.09108 * 88.95022 * 17 15 14 19 19 C 1.54542 * 104.18003 * 0.02562 * 18 17 15 20 20 H 1.08999 * 112.21331 * 146.88108 * 19 18 17 21 21 C 1.47156 * 120.68354 * 180.02562 * 13 11 10 22 22 N 1.48732 * 104.87917 * 24.78461 * 19 18 17 23 23 C 1.46896 * 110.99915 * 78.11176 * 22 19 18 24 24 C 1.50695 * 109.47369 * 190.00148 * 23 22 19 25 25 C 1.38228 * 119.62300 * 94.72960 * 24 23 22 26 26 C 1.38625 * 119.16465 * 179.75733 * 25 24 23 27 27 C 1.38676 * 118.41716 * 0.50435 * 26 25 24 28 28 C 1.38178 * 119.16611 * 359.73400 * 27 26 25 29 29 N 1.31859 * 119.61868 * 274.99951 * 24 23 22 30 30 H 0.96997 * 120.00607 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.47174 * 60.00622 * 10 9 7 32 32 H 1.08998 * 109.47631 * 300.00318 * 10 9 7 33 33 H 1.09007 * 109.74512 * 252.54566 * 14 13 11 34 34 H 1.08992 * 109.75093 * 13.27215 * 14 13 11 35 35 H 1.08996 * 110.35022 * 207.82948 * 17 15 14 36 36 H 1.09000 * 110.34360 * 330.09903 * 17 15 14 37 37 H 1.08996 * 110.89356 * 241.31584 * 18 17 15 38 38 H 1.09005 * 110.52967 * 118.54800 * 18 17 15 39 39 H 1.09003 * 109.74565 * 346.72570 * 21 13 11 40 40 H 1.08998 * 109.74619 * 107.45210 * 21 13 11 41 41 H 1.09000 * 109.47065 * 310.00174 * 23 22 19 42 42 H 1.09004 * 109.47382 * 69.99542 * 23 22 19 43 43 H 1.07997 * 120.41397 * 359.97438 * 25 24 23 44 44 H 1.07996 * 120.79061 * 180.21843 * 26 25 24 45 45 H 1.07995 * 120.41520 * 179.71372 * 27 26 25 46 46 H 1.07998 * 119.62187 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1295 -2.7280 0.0019 10 6 2.5160 -3.8913 0.0013 11 6 1.9877 -5.3027 0.0018 12 8 0.7914 -5.5023 0.0019 13 7 2.8445 -6.3430 0.0020 14 6 4.2987 -6.1181 -0.0043 15 6 4.9262 -7.0261 1.0680 16 1 6.0041 -6.8889 1.1549 17 6 4.1938 -6.7579 2.4022 18 6 2.9893 -7.7470 2.4098 19 6 3.1204 -8.5134 1.0743 20 1 2.7768 -9.5447 1.1556 21 6 2.3450 -7.7272 0.0018 22 7 4.5634 -8.4270 0.7244 23 6 5.3539 -9.3835 1.5104 24 6 6.8215 -9.1032 1.3145 25 6 7.4904 -8.3001 2.2191 26 6 8.8416 -8.0526 2.0325 27 6 9.4699 -8.6159 0.9321 28 6 8.7349 -9.4043 0.0674 29 7 7.4516 -9.6223 0.2791 30 1 -0.4851 0.8400 -0.0004 31 1 3.1253 -3.7309 0.8908 32 1 3.1240 -3.7316 -0.8891 33 1 4.7059 -6.3692 -0.9838 34 1 4.5110 -5.0743 0.2269 35 1 4.8546 -6.9607 3.2448 36 1 3.8371 -5.7285 2.4384 37 1 2.0432 -7.2070 2.4457 38 1 3.0657 -8.4358 3.2512 39 1 1.2807 -7.7347 0.2371 40 1 2.5097 -8.1780 -0.9768 41 1 5.1024 -9.2818 2.5661 42 1 5.1304 -10.3979 1.1799 43 1 6.9678 -7.8738 3.0626 44 1 9.3907 -7.4320 2.7250 45 1 10.5204 -8.4405 0.7530 46 1 9.2167 -9.8463 -0.7922 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713705894.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:12 Heat of formation + Delta-G solvation = 26.133943 kcal Electronic energy + Delta-G solvation = -28345.091979 eV Core-core repulsion = 24554.298228 eV Total energy + Delta-G solvation = -3790.793751 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.35470 -40.24682 -38.39613 -34.82700 -33.05160 -32.66305 -32.42700 -31.75557 -30.42997 -29.39633 -27.28044 -25.52863 -25.01589 -24.74027 -23.82750 -22.21519 -20.73347 -20.46917 -18.62598 -17.77700 -17.16741 -16.92211 -16.66850 -16.24514 -15.83354 -15.62332 -15.29493 -14.80359 -14.63840 -14.37261 -14.28339 -13.96319 -13.79293 -13.56964 -13.24929 -13.08190 -12.79874 -12.76715 -12.62356 -12.47365 -12.12675 -11.89768 -11.57364 -11.26871 -11.13473 -11.08583 -11.06288 -11.00789 -10.75192 -10.61589 -10.21122 -9.80169 -9.73037 -9.41848 -9.30803 -9.06557 -8.89794 -8.36526 -8.21658 -6.49510 -6.21432 -3.91854 0.70211 0.92820 2.95731 3.08552 3.22069 3.25705 3.29580 3.31817 3.61479 3.77876 3.87607 4.20402 4.29600 4.44875 4.48628 4.51618 4.62788 4.71449 4.76365 4.80508 4.97887 5.04085 5.05522 5.10460 5.13606 5.23559 5.30014 5.32460 5.43750 5.44649 5.45993 5.56169 5.71626 5.73282 5.75575 5.78236 5.81423 5.86098 5.91381 5.99368 6.05314 6.13436 6.30880 6.51944 6.64673 6.73044 7.59292 7.63021 7.68827 8.35255 8.60418 9.23802 10.85969 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.014427 B = 0.002654 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.369642 B =10545.615924 C =11844.290776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.150 4.150 11 C 0.535 3.465 12 O -0.519 6.519 13 N -0.614 5.614 14 C 0.124 3.876 15 C 0.043 3.957 16 H 0.103 0.897 17 C -0.145 4.145 18 C -0.144 4.144 19 C 0.050 3.950 20 H 0.104 0.896 21 C 0.129 3.871 22 N -0.490 5.490 23 C 0.093 3.907 24 C 0.137 3.863 25 C -0.170 4.170 26 C -0.075 4.075 27 C -0.176 4.176 28 C 0.100 3.900 29 N -0.465 5.465 30 H 0.268 0.732 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.095 0.905 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.094 0.906 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.134 0.866 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.468 -20.644 5.313 28.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.301 4.301 11 C 0.323 3.677 12 O -0.393 6.393 13 N -0.350 5.350 14 C 0.000 4.000 15 C -0.067 4.067 16 H 0.121 0.879 17 C -0.184 4.184 18 C -0.184 4.184 19 C -0.059 4.059 20 H 0.122 0.878 21 C 0.005 3.995 22 N -0.212 5.212 23 C -0.035 4.035 24 C -0.001 4.001 25 C -0.190 4.190 26 C -0.101 4.101 27 C -0.196 4.196 28 C -0.057 4.057 29 N -0.174 5.174 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.113 0.887 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.112 0.888 43 H 0.150 0.850 44 H 0.152 0.848 45 H 0.152 0.848 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 16.144 -21.496 4.146 27.201 hybrid contribution 2.612 2.040 1.513 3.643 sum 18.756 -19.455 5.659 27.610 Atomic orbital electron populations 1.70017 1.05942 1.27435 1.46891 1.24988 0.95017 0.99001 0.94567 0.86180 0.79398 0.81622 0.78367 1.20255 1.20765 1.19715 1.22854 0.94858 0.91667 1.58891 0.91000 1.85401 1.05011 0.96296 1.96678 1.23551 1.06406 0.95573 1.04533 1.20278 0.86184 0.86114 0.75099 1.90689 1.15128 1.85225 1.48276 1.48074 1.06102 1.05690 1.75141 1.21847 0.80015 0.99343 0.98783 1.23568 0.99835 0.89227 0.94028 0.87908 1.23097 0.96805 1.01128 0.97383 1.23090 0.99764 0.98049 0.97454 1.23485 0.88556 0.99667 0.94196 0.87768 1.21702 0.98764 0.80746 0.98259 1.65546 1.02396 1.02571 1.50731 1.21088 0.87338 0.98299 0.96793 1.21063 0.95925 0.92960 0.90188 1.22044 0.95471 1.00226 1.01264 1.21593 0.94420 0.97175 0.96878 1.22178 1.01676 0.99489 0.96239 1.22809 0.89686 0.94885 0.98281 1.67519 1.09803 1.21291 1.18833 0.92193 0.89509 0.89367 0.90899 0.89215 0.91929 0.90462 0.90171 0.91751 0.88673 0.91099 0.92707 0.88753 0.84971 0.84780 0.84806 0.82712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.19 13.22 55.49 0.73 -25.45 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.53 -15.20 9.50 30.94 0.29 -14.91 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.06 4.53 36.01 0.16 -2.90 16 11 C 0.54 10.19 7.72 -10.98 -0.08 10.11 16 12 O -0.52 -11.81 15.33 5.56 0.09 -11.73 16 13 N -0.61 -8.88 2.25 -171.51 -0.39 -9.26 16 14 C 0.12 1.49 5.78 -3.22 -0.02 1.48 16 15 C 0.04 0.43 3.31 -65.42 -0.22 0.21 16 16 H 0.10 0.99 5.44 -51.93 -0.28 0.70 16 17 C -0.15 -1.46 5.65 -24.40 -0.14 -1.60 16 18 C -0.14 -1.47 5.61 -24.40 -0.14 -1.60 16 19 C 0.05 0.49 3.62 -65.40 -0.24 0.26 16 20 H 0.10 0.85 8.10 -51.93 -0.42 0.43 16 21 C 0.13 1.61 5.89 -3.20 -0.02 1.60 16 22 N -0.49 -4.86 5.07 -214.18 -1.09 -5.94 16 23 C 0.09 0.80 5.26 -4.98 -0.03 0.77 16 24 C 0.14 1.25 5.37 -82.59 -0.44 0.81 16 25 C -0.17 -1.28 7.88 -39.44 -0.31 -1.59 16 26 C -0.07 -0.49 10.18 -39.28 -0.40 -0.89 16 27 C -0.18 -1.14 10.11 -39.44 -0.40 -1.54 16 28 C 0.10 0.80 11.18 -17.55 -0.20 0.60 16 29 N -0.47 -4.76 10.27 -9.48 -0.10 -4.86 16 30 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.09 1.63 7.60 -51.92 -0.39 1.24 16 32 H 0.09 1.70 8.05 -51.92 -0.42 1.28 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 1.07 6.08 -51.93 -0.32 0.76 16 35 H 0.06 0.53 7.80 -51.93 -0.41 0.12 16 36 H 0.08 0.93 7.84 -51.93 -0.41 0.52 16 37 H 0.08 1.01 7.84 -51.93 -0.41 0.60 16 38 H 0.06 0.55 8.00 -51.93 -0.42 0.14 16 39 H 0.10 1.32 7.11 -51.93 -0.37 0.95 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.05 0.41 6.90 -51.93 -0.36 0.05 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.13 0.82 7.72 -52.49 -0.40 0.42 16 44 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 45 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 46 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 377.86 15.07 5.69 5.69 Total: -1.00 -34.82 377.86 -11.23 -46.06 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.68 Total: 0.21 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -2.26 Total: -7.19 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: -0.84 Total: -45.52 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.73 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.82 -11.23 -46.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713705894.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.189 kcal (2) G-P(sol) polarization free energy of solvation -34.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds