Wall clock time and date at job start Wed Apr 1 2020 05:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86797 * 119.99559 * 2 1 4 4 H 1.48504 * 109.47024 * 269.99562 * 3 2 1 5 5 H 1.48502 * 109.47286 * 29.99816 * 3 2 1 6 6 H 1.48503 * 109.47202 * 149.99851 * 3 2 1 7 7 C 1.38798 * 120.00421 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00046 * 180.02562 * 7 2 1 9 9 S 1.76206 * 119.99843 * 359.97438 * 7 2 1 10 10 C 1.80993 * 99.99805 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47045 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00156 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99985 * 180.02562 * 11 10 9 14 14 C 1.47152 * 120.68261 * 359.72210 * 13 11 10 15 15 C 1.53892 * 108.04583 * 132.91045 * 14 13 11 16 16 H 1.09007 * 112.60843 * 182.32242 * 15 14 13 17 17 C 1.54544 * 107.81130 * 306.64373 * 15 14 13 18 18 C 1.55850 * 105.09108 * 88.95022 * 17 15 14 19 19 C 1.54542 * 104.18003 * 0.02562 * 18 17 15 20 20 H 1.08999 * 112.21331 * 146.88108 * 19 18 17 21 21 C 1.47156 * 120.68354 * 180.02562 * 13 11 10 22 22 N 1.48732 * 104.87917 * 24.78461 * 19 18 17 23 23 C 1.46896 * 110.99915 * 78.11176 * 22 19 18 24 24 C 1.50695 * 109.47369 * 190.00148 * 23 22 19 25 25 C 1.38228 * 119.62300 * 94.72960 * 24 23 22 26 26 C 1.38625 * 119.16465 * 179.75733 * 25 24 23 27 27 C 1.38676 * 118.41716 * 0.50435 * 26 25 24 28 28 C 1.38178 * 119.16611 * 359.73400 * 27 26 25 29 29 N 1.31859 * 119.61868 * 274.99951 * 24 23 22 30 30 H 0.96997 * 120.00607 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.47174 * 60.00622 * 10 9 7 32 32 H 1.08998 * 109.47631 * 300.00318 * 10 9 7 33 33 H 1.09007 * 109.74512 * 252.54566 * 14 13 11 34 34 H 1.08992 * 109.75093 * 13.27215 * 14 13 11 35 35 H 1.08996 * 110.35022 * 207.82948 * 17 15 14 36 36 H 1.09000 * 110.34360 * 330.09903 * 17 15 14 37 37 H 1.08996 * 110.89356 * 241.31584 * 18 17 15 38 38 H 1.09005 * 110.52967 * 118.54800 * 18 17 15 39 39 H 1.09003 * 109.74565 * 346.72570 * 21 13 11 40 40 H 1.08998 * 109.74619 * 107.45210 * 21 13 11 41 41 H 1.09000 * 109.47065 * 310.00174 * 23 22 19 42 42 H 1.09004 * 109.47382 * 69.99542 * 23 22 19 43 43 H 1.07997 * 120.41397 * 359.97438 * 25 24 23 44 44 H 1.07996 * 120.79061 * 180.21843 * 26 25 24 45 45 H 1.07995 * 120.41520 * 179.71372 * 27 26 25 46 46 H 1.07998 * 119.62187 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1295 -2.7280 0.0019 10 6 2.5160 -3.8913 0.0013 11 6 1.9877 -5.3027 0.0018 12 8 0.7914 -5.5023 0.0019 13 7 2.8445 -6.3430 0.0020 14 6 4.2987 -6.1181 -0.0043 15 6 4.9262 -7.0261 1.0680 16 1 6.0041 -6.8889 1.1549 17 6 4.1938 -6.7579 2.4022 18 6 2.9893 -7.7470 2.4098 19 6 3.1204 -8.5134 1.0743 20 1 2.7768 -9.5447 1.1556 21 6 2.3450 -7.7272 0.0018 22 7 4.5634 -8.4270 0.7244 23 6 5.3539 -9.3835 1.5104 24 6 6.8215 -9.1032 1.3145 25 6 7.4904 -8.3001 2.2191 26 6 8.8416 -8.0526 2.0325 27 6 9.4699 -8.6159 0.9321 28 6 8.7349 -9.4043 0.0674 29 7 7.4516 -9.6223 0.2791 30 1 -0.4851 0.8400 -0.0004 31 1 3.1253 -3.7309 0.8908 32 1 3.1240 -3.7316 -0.8891 33 1 4.7059 -6.3692 -0.9838 34 1 4.5110 -5.0743 0.2269 35 1 4.8546 -6.9607 3.2448 36 1 3.8371 -5.7285 2.4384 37 1 2.0432 -7.2070 2.4457 38 1 3.0657 -8.4358 3.2512 39 1 1.2807 -7.7347 0.2371 40 1 2.5097 -8.1780 -0.9768 41 1 5.1024 -9.2818 2.5661 42 1 5.1304 -10.3979 1.1799 43 1 6.9678 -7.8738 3.0626 44 1 9.3907 -7.4320 2.7250 45 1 10.5204 -8.4405 0.7530 46 1 9.2167 -9.8463 -0.7922 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713705894.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:11 Heat of formation + Delta-G solvation = 3.106534 kcal Electronic energy + Delta-G solvation = -28346.090522 eV Core-core repulsion = 24554.298228 eV Total energy + Delta-G solvation = -3791.792294 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.24458 -40.96619 -39.69932 -35.96492 -34.58945 -33.78186 -33.31413 -32.66089 -31.13247 -30.87352 -28.25611 -27.63774 -25.90340 -25.72380 -24.36533 -22.86906 -21.68517 -21.53026 -19.99339 -19.34985 -18.34477 -17.68338 -17.44269 -17.15100 -16.89533 -16.81706 -16.62198 -16.27830 -15.71982 -15.64752 -15.42582 -15.05149 -14.61730 -14.48902 -14.40699 -14.08815 -13.93770 -13.85839 -13.58926 -13.38067 -13.28166 -13.16484 -12.89714 -12.79472 -12.60743 -12.44454 -12.14439 -12.00103 -11.96299 -11.70929 -11.44905 -11.14747 -10.88136 -10.74403 -10.29435 -10.27502 -9.99298 -9.82819 -9.39832 -8.67963 -8.34966 -6.13462 0.17241 0.41668 1.24572 1.42175 1.45149 1.55886 1.57220 2.07817 2.26868 2.65352 2.99109 3.09234 3.22592 3.30827 3.53902 3.62669 3.76616 3.84277 3.88043 3.96968 4.07939 4.13690 4.20170 4.21960 4.28088 4.30344 4.40335 4.43791 4.45243 4.56498 4.61814 4.63325 4.73740 4.79714 4.82168 4.86260 4.93491 4.97209 5.08825 5.19844 5.26372 5.33099 5.41052 5.49642 5.71773 5.83884 5.94652 6.19268 6.30440 7.06084 7.13531 7.13967 8.74307 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.014427 B = 0.002654 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.369642 B =10545.615924 C =11844.290776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.545 4.545 8 H 0.082 0.918 9 S -0.149 6.149 10 C -0.123 4.123 11 C 0.535 3.465 12 O -0.565 6.565 13 N -0.598 5.598 14 C 0.116 3.884 15 C 0.054 3.946 16 H 0.115 0.885 17 C -0.143 4.143 18 C -0.143 4.143 19 C 0.061 3.939 20 H 0.128 0.872 21 C 0.124 3.876 22 N -0.497 5.497 23 C 0.097 3.903 24 C 0.119 3.881 25 C -0.173 4.173 26 C -0.079 4.079 27 C -0.173 4.173 28 C 0.084 3.916 29 N -0.498 5.498 30 H 0.271 0.729 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.092 0.908 43 H 0.146 0.854 44 H 0.158 0.842 45 H 0.159 0.841 46 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.037 -21.030 6.251 31.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.181 1.181 7 C -0.693 4.693 8 H 0.100 0.900 9 S 0.078 5.922 10 C -0.274 4.274 11 C 0.323 3.677 12 O -0.444 6.444 13 N -0.332 5.332 14 C -0.006 4.006 15 C -0.055 4.055 16 H 0.133 0.867 17 C -0.182 4.182 18 C -0.182 4.182 19 C -0.048 4.048 20 H 0.145 0.855 21 C 0.002 3.998 22 N -0.220 5.220 23 C -0.030 4.030 24 C -0.019 4.019 25 C -0.194 4.194 26 C -0.105 4.105 27 C -0.192 4.192 28 C -0.073 4.073 29 N -0.208 5.208 30 H 0.080 0.920 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.110 0.890 43 H 0.164 0.836 44 H 0.176 0.824 45 H 0.176 0.824 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 19.765 -21.928 5.085 29.956 hybrid contribution 1.611 2.007 1.197 2.838 sum 21.376 -19.921 6.282 29.887 Atomic orbital electron populations 1.70184 1.07991 1.28624 1.48001 1.26134 0.95965 1.03317 0.93718 0.84954 0.78246 0.75977 0.78807 1.19345 1.20272 1.18061 1.23180 0.95285 0.91918 1.58889 0.89983 1.85580 1.10427 0.99169 1.96998 1.23355 1.03422 0.94614 1.06001 1.20044 0.85937 0.86477 0.75262 1.90672 1.17053 1.85728 1.50951 1.48021 1.06805 1.05483 1.72876 1.22089 0.78219 1.00279 1.00061 1.23453 1.00151 0.88932 0.92975 0.86709 1.23090 0.97069 0.99757 0.98315 1.23062 0.98389 0.98278 0.98469 1.23422 0.88462 1.00247 0.92715 0.85467 1.21859 0.98440 0.79801 0.99743 1.65478 1.02261 1.02678 1.51544 1.21075 0.87124 0.97562 0.97280 1.21156 0.96102 0.93948 0.90735 1.22224 0.96057 0.99811 1.01264 1.21960 0.94297 0.97029 0.97185 1.22482 1.02801 0.98358 0.95608 1.23169 0.89373 0.95482 0.99288 1.67472 1.11057 1.22444 1.19837 0.91983 0.87666 0.87941 0.90445 0.89031 0.89521 0.92659 0.93144 0.89463 0.90392 0.90582 0.91203 0.88958 0.83597 0.82435 0.82357 0.81307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.30 13.22 21.65 0.29 -56.01 16 2 C 0.01 0.76 5.49 84.86 0.47 1.23 16 3 Si 1.00 43.59 29.55 68.60 2.03 45.62 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 7 C -0.54 -31.28 9.50 67.95 0.65 -30.64 16 8 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 9 S -0.15 -8.40 20.57 -56.49 -1.16 -9.56 16 10 C -0.12 -5.06 4.53 71.24 0.32 -4.74 16 11 C 0.54 20.86 7.72 87.66 0.68 21.54 16 12 O -0.57 -27.00 15.33 -3.04 -0.05 -27.05 16 13 N -0.60 -17.19 2.25 -814.92 -1.83 -19.02 16 14 C 0.12 2.64 5.78 86.56 0.50 3.14 16 15 C 0.05 0.97 3.31 45.39 0.15 1.12 16 16 H 0.12 1.87 5.44 -2.38 -0.01 1.86 16 17 C -0.14 -2.59 5.65 32.11 0.18 -2.41 16 18 C -0.14 -2.69 5.61 32.10 0.18 -2.51 16 19 C 0.06 1.10 3.62 45.40 0.16 1.26 16 20 H 0.13 1.77 8.10 -2.39 -0.02 1.75 16 21 C 0.12 3.10 5.89 86.57 0.51 3.61 16 22 N -0.50 -8.79 5.07 -831.53 -4.22 -13.00 16 23 C 0.10 1.43 5.26 85.56 0.45 1.88 16 24 C 0.12 1.90 5.37 42.55 0.23 2.13 16 25 C -0.17 -2.10 7.88 22.36 0.18 -1.92 16 26 C -0.08 -0.78 10.18 22.47 0.23 -0.56 16 27 C -0.17 -1.75 10.11 22.36 0.23 -1.52 16 28 C 0.08 1.17 11.18 84.67 0.95 2.12 16 29 N -0.50 -9.39 10.27 -183.89 -1.89 -11.28 16 30 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 31 H 0.11 3.92 7.60 -2.39 -0.02 3.90 16 32 H 0.10 3.91 8.05 -2.40 -0.02 3.89 16 33 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.09 2.05 6.08 -2.39 -0.01 2.03 16 35 H 0.09 1.17 7.80 -2.39 -0.02 1.15 16 36 H 0.05 1.26 7.84 -2.39 -0.02 1.25 16 37 H 0.05 1.28 7.84 -2.39 -0.02 1.26 16 38 H 0.09 1.26 8.00 -2.38 -0.02 1.24 16 39 H 0.08 2.25 7.11 -2.39 -0.02 2.23 16 40 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.07 0.81 6.90 -2.39 -0.02 0.79 16 42 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 43 H 0.15 1.28 7.72 -2.91 -0.02 1.25 16 44 H 0.16 0.76 8.06 -2.91 -0.02 0.74 16 45 H 0.16 0.73 8.06 -2.91 -0.02 0.70 16 46 H 0.17 1.62 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -78.53 377.86 0.20 -78.33 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.98 Total: 18.24 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: 6.05 Total: -6.27 kcal Atomic # 7 Polarization: -91.66 SS G_CDS: -7.65 Total: -99.31 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.05 Total: -27.05 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.56 kcal Total: -78.53 0.20 -78.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713705894.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.432 kcal (2) G-P(sol) polarization free energy of solvation -78.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds