Wall clock time and date at job start Wed Apr 1 2020 05:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34235 * 116.99888 * 2 1 4 4 O 1.20824 * 120.00270 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99587 * 179.97438 * 3 2 1 6 6 C 1.53007 * 109.47055 * 204.99493 * 5 3 2 7 7 N 1.46493 * 109.47539 * 324.99512 * 5 3 2 8 8 C 1.34775 * 120.00261 * 179.97438 * 7 5 3 9 9 O 1.21281 * 120.00114 * 0.02562 * 8 7 5 10 10 C 1.50701 * 120.00170 * 179.97438 * 8 7 5 11 11 C 1.50706 * 109.47172 * 180.02562 * 10 8 7 12 12 C 1.38297 * 119.93012 * 269.73014 * 11 10 8 13 13 C 1.38100 * 120.06616 * 179.72536 * 12 11 10 14 14 C 1.38879 * 119.93064 * 0.57175 * 13 12 11 15 15 O 1.35754 * 120.07103 * 179.68416 * 14 13 12 16 16 C 1.34834 * 117.00026 * 174.48770 * 15 14 13 17 17 H 1.07999 * 119.99821 * 5.05220 * 16 15 14 18 18 C 1.38654 * 119.99730 * 185.05569 * 16 15 14 19 19 N 1.31553 * 119.99562 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00086 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47219 * 90.00228 * 20 18 16 22 22 H 1.48498 * 109.47023 * 210.00071 * 20 18 16 23 23 H 1.48502 * 109.47013 * 330.00022 * 20 18 16 24 24 C 1.38877 * 119.86228 * 359.70365 * 14 13 12 25 25 C 1.38108 * 119.93033 * 359.97438 * 24 14 13 26 26 C 1.53008 * 109.47161 * 84.99832 * 5 3 2 27 27 C 1.53001 * 117.49886 * 64.99728 * 26 5 3 28 28 C 1.52995 * 117.49734 * 356.37458 * 26 5 3 29 29 H 1.09004 * 109.47099 * 60.00249 * 1 2 3 30 30 H 1.08993 * 109.47282 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47100 * 300.00943 * 1 2 3 32 32 H 1.09001 * 109.46780 * 300.00402 * 6 5 3 33 33 H 1.08994 * 109.46940 * 60.00083 * 6 5 3 34 34 H 1.09001 * 109.46711 * 180.02562 * 6 5 3 35 35 H 0.96999 * 120.00254 * 0.02562 * 7 5 3 36 36 H 1.08994 * 109.47263 * 300.00737 * 10 8 7 37 37 H 1.09005 * 109.46692 * 60.00605 * 10 8 7 38 38 H 1.08004 * 119.96703 * 359.97438 * 12 11 10 39 39 H 1.08002 * 120.03494 * 180.27221 * 13 12 11 40 40 H 0.97001 * 119.99945 * 179.97438 * 19 18 16 41 41 H 1.07999 * 120.03700 * 179.97438 * 24 14 13 42 42 H 1.07995 * 119.96492 * 180.02562 * 25 24 14 43 43 H 1.08997 * 115.56178 * 210.68522 * 26 5 3 44 44 H 1.08996 * 117.49962 * 145.02026 * 27 26 5 45 45 H 1.08998 * 117.50009 * 359.97438 * 27 26 5 46 46 H 1.08998 * 117.50203 * 0.02562 * 28 26 5 47 47 H 1.08997 * 117.49869 * 214.97992 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0070 2.6073 0.6100 7 7 4.1129 0.1708 0.7933 8 6 5.4466 0.0384 0.9347 9 8 6.1944 0.8336 0.4060 10 6 6.0088 -1.0970 1.7506 11 6 7.5138 -1.0182 1.7511 12 6 8.2394 -1.6740 0.7733 13 6 9.6184 -1.5990 0.7677 14 6 10.2769 -0.8740 1.7522 15 8 11.6326 -0.8037 1.7532 16 6 12.2029 0.0079 2.6665 17 1 11.5910 0.5021 3.4066 18 6 13.5748 0.2082 2.6554 19 7 14.1311 1.0004 3.5461 20 14 14.6332 -0.6471 1.3756 21 1 14.7478 0.2149 0.1718 22 1 15.9853 -0.8953 1.9371 23 1 14.0079 -1.9407 1.0004 24 6 9.5457 -0.2213 2.7361 25 6 8.1665 -0.2946 2.7324 26 6 4.0828 1.1756 -1.4363 27 6 3.7181 2.3084 -2.3979 28 6 3.0527 0.9383 -2.5424 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 3.6003 3.4288 0.0202 33 1 3.6391 2.6780 1.6336 34 1 5.0955 2.6644 0.6100 35 1 3.5149 -0.4654 1.2159 36 1 5.6413 -1.0257 2.7743 37 1 5.6945 -2.0464 1.3170 38 1 7.7269 -2.2420 0.0109 39 1 10.1843 -2.1077 0.0013 40 1 15.0910 1.1403 3.5386 41 1 10.0549 0.3430 3.5033 42 1 7.5973 0.2131 3.4969 43 1 5.0624 0.7122 -1.5529 44 1 4.4578 2.5903 -3.1472 45 1 3.1099 3.1242 -2.0071 46 1 2.0071 0.8532 -2.2466 47 1 3.3547 0.3187 -3.3867 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129676769.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:00 Heat of formation + Delta-G solvation = -87.347926 kcal Electronic energy + Delta-G solvation = -30323.679044 eV Core-core repulsion = 26052.918728 eV Total energy + Delta-G solvation = -4270.760316 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.64823 -39.92740 -39.02418 -37.83446 -36.86787 -36.56417 -34.69803 -32.52365 -31.87011 -30.34707 -30.17025 -28.50793 -26.87855 -25.37121 -24.70092 -23.07608 -22.49070 -22.07580 -21.37499 -20.24383 -19.62743 -18.41321 -17.85471 -17.59006 -17.49041 -17.19132 -16.36108 -15.86590 -15.48598 -15.04077 -14.81919 -14.38682 -14.36721 -14.03922 -13.81381 -13.73825 -13.61178 -13.47718 -13.36901 -12.84502 -12.68877 -12.59971 -12.54519 -12.35594 -12.16954 -12.01012 -11.74050 -11.63350 -11.29996 -11.27133 -11.01600 -10.90364 -10.77237 -10.71910 -10.64730 -10.41906 -10.13082 -9.63013 -9.35713 -9.33560 -8.83167 -8.20429 -7.27918 -6.38717 -4.05018 1.58545 2.09629 2.17714 2.19059 2.65090 2.91341 3.24251 3.28409 3.42519 3.46993 4.08334 4.25300 4.26394 4.47759 4.53811 4.62696 4.64639 4.70021 4.82619 4.88781 4.98798 5.00393 5.04878 5.13835 5.24475 5.25408 5.30824 5.50229 5.53116 5.61559 5.63406 5.68635 5.72720 5.78104 5.78692 5.90204 6.05921 6.16442 6.21124 6.36172 6.59679 6.82570 7.04946 7.17668 7.25005 7.33541 7.33981 7.65002 7.83663 8.07120 8.20461 8.96714 9.59519 10.68999 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.021836 B = 0.002117 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.955979 B =13224.435322 C =13421.865236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.354 6.354 3 C 0.468 3.532 4 O -0.492 6.492 5 C 0.227 3.773 6 C -0.155 4.155 7 N -0.730 5.730 8 C 0.516 3.484 9 O -0.509 6.509 10 C -0.080 4.080 11 C -0.162 4.162 12 C -0.061 4.061 13 C -0.191 4.191 14 C 0.162 3.838 15 O -0.218 6.218 16 C -0.388 4.388 17 H 0.106 0.894 18 C 0.062 3.938 19 N -0.880 5.880 20 Si 0.906 3.094 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.260 1.260 24 C -0.219 4.219 25 C -0.057 4.057 26 C -0.152 4.152 27 C -0.168 4.168 28 C -0.184 4.184 29 H 0.064 0.936 30 H 0.105 0.895 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.406 0.594 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.279 0.721 41 H 0.132 0.868 42 H 0.107 0.893 43 H 0.135 0.865 44 H 0.104 0.896 45 H 0.100 0.900 46 H 0.087 0.913 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.745 -3.767 -7.514 28.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.271 6.271 3 C 0.309 3.691 4 O -0.378 6.378 5 C 0.139 3.861 6 C -0.213 4.213 7 N -0.386 5.386 8 C 0.303 3.697 9 O -0.382 6.382 10 C -0.120 4.120 11 C -0.163 4.163 12 C -0.079 4.079 13 C -0.211 4.211 14 C 0.110 3.890 15 O -0.123 6.123 16 C -0.464 4.464 17 H 0.124 0.876 18 C -0.141 4.141 19 N -0.518 5.518 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.184 1.184 24 C -0.238 4.238 25 C -0.075 4.075 26 C -0.171 4.171 27 C -0.205 4.205 28 C -0.221 4.221 29 H 0.082 0.918 30 H 0.123 0.877 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.119 0.881 35 H 0.241 0.759 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.128 0.872 39 H 0.134 0.866 40 H 0.089 0.911 41 H 0.150 0.850 42 H 0.125 0.875 43 H 0.153 0.847 44 H 0.122 0.878 45 H 0.118 0.882 46 H 0.105 0.895 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -27.036 -2.890 -7.940 28.326 hybrid contribution -0.109 -0.403 -0.167 0.449 sum -27.145 -3.293 -8.107 28.521 Atomic orbital electron populations 1.23340 0.75940 1.04078 1.02727 1.86533 1.23699 1.33103 1.83742 1.23660 0.91448 0.81811 0.72149 1.90699 1.66276 1.36276 1.44508 1.19702 0.83636 0.90399 0.92323 1.22192 1.05111 0.93381 1.00638 1.46107 1.07906 1.30373 1.54260 1.21045 0.80831 0.86920 0.80921 1.90730 1.57980 1.42954 1.46543 1.20434 0.94439 0.96758 1.00398 1.18671 0.91974 1.05835 0.99807 1.20394 0.92830 0.98058 0.96646 1.20147 0.93785 1.06471 1.00651 1.19126 0.83577 0.93256 0.93022 1.83571 1.15246 1.59473 1.54023 1.20772 0.92399 1.23771 1.09435 0.87620 1.24469 0.96037 0.96054 0.97502 1.69647 1.12375 1.35393 1.34400 0.86179 0.78819 0.80963 0.80927 1.19892 1.20830 1.18373 1.21223 0.93922 1.06420 1.02274 1.20563 0.93806 0.96235 0.96937 1.22571 1.01289 1.05346 0.87903 1.23060 1.03427 0.92079 1.01954 1.23128 0.97205 1.00490 1.01230 0.91770 0.87695 0.91670 0.90485 0.91985 0.88134 0.75879 0.88726 0.88660 0.87202 0.86603 0.91093 0.85002 0.87534 0.84694 0.87783 0.88211 0.89498 0.87932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.56 101.05 1.07 1.24 16 2 O -0.35 -2.80 9.44 -39.27 -0.37 -3.17 16 3 C 0.47 4.62 4.49 36.00 0.16 4.78 16 4 O -0.49 -5.83 15.84 -18.75 -0.30 -6.12 16 5 C 0.23 2.35 0.87 -132.97 -0.12 2.23 16 6 C -0.16 -1.75 7.72 37.16 0.29 -1.46 16 7 N -0.73 -6.90 5.04 -48.68 -0.25 -7.15 16 8 C 0.52 6.29 7.09 -10.99 -0.08 6.21 16 9 O -0.51 -8.27 12.57 5.56 0.07 -8.20 16 10 C -0.08 -0.89 5.83 -29.03 -0.17 -1.06 16 11 C -0.16 -2.59 4.38 -104.58 -0.46 -3.05 16 12 C -0.06 -1.03 9.69 -39.61 -0.38 -1.41 16 13 C -0.19 -3.84 9.99 -39.39 -0.39 -4.23 16 14 C 0.16 3.80 6.65 -39.11 -0.26 3.54 16 15 O -0.22 -5.84 8.59 0.02 0.00 -5.84 16 16 C -0.39 -11.07 9.95 30.89 0.31 -10.77 16 17 H 0.11 3.08 5.44 -52.49 -0.29 2.79 16 18 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 19 N -0.88 -25.67 13.96 55.48 0.77 -24.90 16 20 Si 0.91 21.93 28.62 -169.99 -4.86 17.06 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.26 -6.29 7.11 56.52 0.40 -5.89 16 24 C -0.22 -4.79 9.17 -39.39 -0.36 -5.15 16 25 C -0.06 -1.03 9.69 -39.61 -0.38 -1.42 16 26 C -0.15 -1.60 4.90 -90.62 -0.44 -2.05 16 27 C -0.17 -1.59 9.56 -26.73 -0.26 -1.84 16 28 C -0.18 -1.64 9.68 -26.73 -0.26 -1.90 16 29 H 0.06 0.34 8.13 -51.93 -0.42 -0.09 16 30 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 32 H 0.08 0.83 6.72 -51.93 -0.35 0.48 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 1.34 6.17 -51.93 -0.32 1.01 16 35 H 0.41 2.82 7.91 -40.82 -0.32 2.50 16 36 H 0.09 0.85 8.08 -51.93 -0.42 0.43 16 37 H 0.10 0.82 8.08 -51.93 -0.42 0.40 16 38 H 0.11 1.52 8.06 -52.48 -0.42 1.09 16 39 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 40 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.13 3.03 5.64 -52.49 -0.30 2.74 16 42 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.14 1.68 6.58 -51.93 -0.34 1.34 16 44 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.10 0.96 7.29 -51.93 -0.38 0.58 16 46 H 0.09 0.78 6.19 -51.93 -0.32 0.46 16 47 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 390.51 15.07 5.88 5.88 Total: -1.00 -33.24 390.51 -7.28 -40.51 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -6.39 Total: 6.56 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -1.84 Total: -14.64 kcal Atomic # 7 Polarization: -32.57 SS G_CDS: 0.53 Total: -32.04 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.60 Total: -23.33 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.86 Total: 17.06 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.24 -7.28 -40.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129676769.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.835 kcal (2) G-P(sol) polarization free energy of solvation -33.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds