Wall clock time and date at job start Wed Apr 1 2020 05:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34235 * 116.99888 * 2 1 4 4 O 1.20824 * 120.00270 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99587 * 179.97438 * 3 2 1 6 6 C 1.53007 * 109.47055 * 204.99493 * 5 3 2 7 7 N 1.46493 * 109.47539 * 324.99512 * 5 3 2 8 8 C 1.34775 * 120.00261 * 179.97438 * 7 5 3 9 9 O 1.21281 * 120.00114 * 0.02562 * 8 7 5 10 10 C 1.50701 * 120.00170 * 179.97438 * 8 7 5 11 11 C 1.50706 * 109.47172 * 180.02562 * 10 8 7 12 12 C 1.38297 * 119.93012 * 269.73014 * 11 10 8 13 13 C 1.38100 * 120.06616 * 179.72536 * 12 11 10 14 14 C 1.38879 * 119.93064 * 0.57175 * 13 12 11 15 15 O 1.35754 * 120.07103 * 179.68416 * 14 13 12 16 16 C 1.34834 * 117.00026 * 174.48770 * 15 14 13 17 17 H 1.07999 * 119.99821 * 5.05220 * 16 15 14 18 18 C 1.38654 * 119.99730 * 185.05569 * 16 15 14 19 19 N 1.31553 * 119.99562 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00086 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47219 * 90.00228 * 20 18 16 22 22 H 1.48498 * 109.47023 * 210.00071 * 20 18 16 23 23 H 1.48502 * 109.47013 * 330.00022 * 20 18 16 24 24 C 1.38877 * 119.86228 * 359.70365 * 14 13 12 25 25 C 1.38108 * 119.93033 * 359.97438 * 24 14 13 26 26 C 1.53008 * 109.47161 * 84.99832 * 5 3 2 27 27 C 1.53001 * 117.49886 * 64.99728 * 26 5 3 28 28 C 1.52995 * 117.49734 * 356.37458 * 26 5 3 29 29 H 1.09004 * 109.47099 * 60.00249 * 1 2 3 30 30 H 1.08993 * 109.47282 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47100 * 300.00943 * 1 2 3 32 32 H 1.09001 * 109.46780 * 300.00402 * 6 5 3 33 33 H 1.08994 * 109.46940 * 60.00083 * 6 5 3 34 34 H 1.09001 * 109.46711 * 180.02562 * 6 5 3 35 35 H 0.96999 * 120.00254 * 0.02562 * 7 5 3 36 36 H 1.08994 * 109.47263 * 300.00737 * 10 8 7 37 37 H 1.09005 * 109.46692 * 60.00605 * 10 8 7 38 38 H 1.08004 * 119.96703 * 359.97438 * 12 11 10 39 39 H 1.08002 * 120.03494 * 180.27221 * 13 12 11 40 40 H 0.97001 * 119.99945 * 179.97438 * 19 18 16 41 41 H 1.07999 * 120.03700 * 179.97438 * 24 14 13 42 42 H 1.07995 * 119.96492 * 180.02562 * 25 24 14 43 43 H 1.08997 * 115.56178 * 210.68522 * 26 5 3 44 44 H 1.08996 * 117.49962 * 145.02026 * 27 26 5 45 45 H 1.08998 * 117.50009 * 359.97438 * 27 26 5 46 46 H 1.08998 * 117.50203 * 0.02562 * 28 26 5 47 47 H 1.08997 * 117.49869 * 214.97992 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0070 2.6073 0.6100 7 7 4.1129 0.1708 0.7933 8 6 5.4466 0.0384 0.9347 9 8 6.1944 0.8336 0.4060 10 6 6.0088 -1.0970 1.7506 11 6 7.5138 -1.0182 1.7511 12 6 8.2394 -1.6740 0.7733 13 6 9.6184 -1.5990 0.7677 14 6 10.2769 -0.8740 1.7522 15 8 11.6326 -0.8037 1.7532 16 6 12.2029 0.0079 2.6665 17 1 11.5910 0.5021 3.4066 18 6 13.5748 0.2082 2.6554 19 7 14.1311 1.0004 3.5461 20 14 14.6332 -0.6471 1.3756 21 1 14.7478 0.2149 0.1718 22 1 15.9853 -0.8953 1.9371 23 1 14.0079 -1.9407 1.0004 24 6 9.5457 -0.2213 2.7361 25 6 8.1665 -0.2946 2.7324 26 6 4.0828 1.1756 -1.4363 27 6 3.7181 2.3084 -2.3979 28 6 3.0527 0.9383 -2.5424 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 3.6003 3.4288 0.0202 33 1 3.6391 2.6780 1.6336 34 1 5.0955 2.6644 0.6100 35 1 3.5149 -0.4654 1.2159 36 1 5.6413 -1.0257 2.7743 37 1 5.6945 -2.0464 1.3170 38 1 7.7269 -2.2420 0.0109 39 1 10.1843 -2.1077 0.0013 40 1 15.0910 1.1403 3.5386 41 1 10.0549 0.3430 3.5033 42 1 7.5973 0.2131 3.4969 43 1 5.0624 0.7122 -1.5529 44 1 4.4578 2.5903 -3.1472 45 1 3.1099 3.1242 -2.0071 46 1 2.0071 0.8532 -2.2466 47 1 3.3547 0.3187 -3.3867 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129676769.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:59 Heat of formation + Delta-G solvation = -108.161810 kcal Electronic energy + Delta-G solvation = -30324.581602 eV Core-core repulsion = 26052.918728 eV Total energy + Delta-G solvation = -4271.662874 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.42692 -41.06960 -40.48288 -38.78131 -38.10838 -37.54856 -35.59614 -34.50523 -33.17101 -31.77880 -31.35117 -29.03318 -28.32027 -26.83811 -25.87699 -23.83020 -23.66971 -23.22369 -22.64027 -21.39595 -20.46164 -19.80611 -19.27430 -19.00686 -18.31328 -18.25613 -17.18521 -16.75525 -16.58810 -16.39548 -16.10479 -15.73381 -15.59475 -15.52285 -15.14495 -14.99095 -14.68940 -14.43674 -14.29789 -14.21659 -14.08167 -14.03672 -13.65635 -13.31792 -13.15931 -13.01397 -12.83625 -12.69106 -12.47622 -12.45024 -12.38842 -12.28214 -11.91652 -11.87613 -11.79007 -11.53673 -11.25121 -11.18508 -10.90922 -10.63021 -10.21779 -9.74486 -8.94768 -8.49238 -6.21454 0.62928 0.63664 0.84472 1.30830 1.35593 1.43715 1.51929 1.71980 2.03501 2.28638 2.69586 2.80353 3.08093 3.20822 3.35285 3.52732 3.80515 3.86407 3.87396 4.03610 4.08194 4.19996 4.21200 4.25164 4.29561 4.33432 4.52047 4.55378 4.61855 4.66500 4.67468 4.73037 4.75422 4.86050 4.88140 4.97760 5.03397 5.07172 5.13060 5.20766 5.29529 5.35526 5.40791 5.60240 5.77978 5.83156 5.93925 6.28179 6.45831 6.56457 6.85233 7.31757 7.60819 8.62597 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.021836 B = 0.002117 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.955979 B =13224.435322 C =13421.865236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.350 6.350 3 C 0.476 3.524 4 O -0.515 6.515 5 C 0.226 3.774 6 C -0.153 4.153 7 N -0.711 5.711 8 C 0.519 3.481 9 O -0.556 6.556 10 C -0.079 4.079 11 C -0.134 4.134 12 C -0.056 4.056 13 C -0.194 4.194 14 C 0.117 3.883 15 O -0.247 6.247 16 C -0.398 4.398 17 H 0.079 0.921 18 C 0.007 3.993 19 N -0.925 5.925 20 Si 0.972 3.028 21 H -0.268 1.268 22 H -0.266 1.266 23 H -0.262 1.262 24 C -0.239 4.239 25 C -0.063 4.063 26 C -0.163 4.163 27 C -0.172 4.172 28 C -0.168 4.168 29 H 0.063 0.937 30 H 0.136 0.864 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.422 0.578 36 H 0.127 0.873 37 H 0.137 0.863 38 H 0.155 0.845 39 H 0.126 0.874 40 H 0.284 0.716 41 H 0.104 0.896 42 H 0.132 0.868 43 H 0.118 0.882 44 H 0.108 0.892 45 H 0.096 0.904 46 H 0.089 0.911 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.408 -6.185 -9.079 33.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.266 6.266 3 C 0.318 3.682 4 O -0.402 6.402 5 C 0.138 3.862 6 C -0.210 4.210 7 N -0.368 5.368 8 C 0.307 3.693 9 O -0.432 6.432 10 C -0.118 4.118 11 C -0.135 4.135 12 C -0.074 4.074 13 C -0.213 4.213 14 C 0.068 3.932 15 O -0.155 6.155 16 C -0.474 4.474 17 H 0.097 0.903 18 C -0.191 4.191 19 N -0.566 5.566 20 Si 0.794 3.206 21 H -0.193 1.193 22 H -0.190 1.190 23 H -0.186 1.186 24 C -0.258 4.258 25 C -0.081 4.081 26 C -0.182 4.182 27 C -0.210 4.210 28 C -0.204 4.204 29 H 0.081 0.919 30 H 0.155 0.845 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.260 0.740 36 H 0.145 0.855 37 H 0.155 0.845 38 H 0.172 0.828 39 H 0.144 0.856 40 H 0.094 0.906 41 H 0.122 0.878 42 H 0.150 0.850 43 H 0.136 0.864 44 H 0.127 0.873 45 H 0.114 0.886 46 H 0.107 0.893 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -30.788 -5.351 -9.494 32.660 hybrid contribution 0.562 0.313 0.298 0.709 sum -30.226 -5.038 -9.197 31.993 Atomic orbital electron populations 1.23660 0.74147 1.06198 1.02766 1.86516 1.25329 1.31649 1.83117 1.23411 0.91011 0.82102 0.71666 1.90699 1.66630 1.37182 1.45708 1.19603 0.84328 0.89979 0.92298 1.22109 1.03556 0.94368 1.01017 1.45862 1.07315 1.30163 1.53476 1.21130 0.81273 0.86499 0.80361 1.90751 1.59192 1.44691 1.48600 1.20564 0.90295 0.98232 1.02698 1.19255 0.95120 1.01961 0.97197 1.20943 0.91526 0.97563 0.97394 1.20507 0.95440 1.05550 0.99799 1.19699 0.82820 0.95544 0.95093 1.83509 1.17081 1.60598 1.54324 1.20702 0.92775 1.24300 1.09661 0.90348 1.25306 0.97149 0.96945 0.99681 1.69734 1.12980 1.37431 1.36418 0.85197 0.77473 0.79544 0.78360 1.19299 1.19028 1.18596 1.21241 0.95849 1.06896 1.01846 1.20905 0.92252 0.96524 0.98438 1.22454 1.01039 1.06273 0.88410 1.23098 1.03696 0.92307 1.01876 1.23165 0.96803 0.99815 1.00647 0.91852 0.84547 0.91620 0.90507 0.91649 0.90350 0.74011 0.85484 0.84469 0.82774 0.85563 0.90615 0.87822 0.84981 0.86447 0.87317 0.88600 0.89263 0.86597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.56 113.37 1.20 1.37 16 2 O -0.35 -4.31 9.44 -51.47 -0.49 -4.80 16 3 C 0.48 8.23 4.49 71.23 0.32 8.55 16 4 O -0.51 -11.27 15.84 21.97 0.35 -10.92 16 5 C 0.23 4.20 0.87 2.86 0.00 4.21 16 6 C -0.15 -3.31 7.72 71.98 0.56 -2.76 16 7 N -0.71 -10.97 5.04 -426.33 -2.15 -13.12 16 8 C 0.52 10.85 7.09 87.66 0.62 11.47 16 9 O -0.56 -17.09 12.57 -3.03 -0.04 -17.13 16 10 C -0.08 -1.32 5.83 29.10 0.17 -1.15 16 11 C -0.13 -3.84 4.38 -19.83 -0.09 -3.92 16 12 C -0.06 -1.71 9.69 22.25 0.22 -1.49 16 13 C -0.19 -7.60 9.99 22.39 0.22 -7.38 16 14 C 0.12 5.69 6.65 22.58 0.15 5.84 16 15 O -0.25 -13.92 8.59 -22.83 -0.20 -14.12 16 16 C -0.40 -24.25 9.95 67.92 0.68 -23.58 16 17 H 0.08 5.02 5.44 -2.91 -0.02 5.00 16 18 C 0.01 0.43 5.49 84.83 0.47 0.89 16 19 N -0.92 -56.62 13.96 21.61 0.30 -56.32 16 20 Si 0.97 46.71 28.62 68.60 1.96 48.67 16 21 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.26 -12.49 7.11 99.48 0.71 -11.78 16 24 C -0.24 -10.92 9.17 22.39 0.21 -10.71 16 25 C -0.06 -2.21 9.69 22.25 0.22 -2.00 16 26 C -0.16 -3.15 4.90 -10.79 -0.05 -3.20 16 27 C -0.17 -3.06 9.56 30.59 0.29 -2.77 16 28 C -0.17 -2.58 9.68 30.59 0.30 -2.29 16 29 H 0.06 0.49 8.13 -2.38 -0.02 0.47 16 30 H 0.14 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.07 0.49 8.13 -2.39 -0.02 0.47 16 32 H 0.08 1.63 6.72 -2.39 -0.02 1.62 16 33 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.08 2.09 6.17 -2.39 -0.01 2.07 16 35 H 0.42 3.90 7.91 -92.71 -0.73 3.17 16 36 H 0.13 1.47 8.08 -2.39 -0.02 1.45 16 37 H 0.14 1.33 8.08 -2.38 -0.02 1.31 16 38 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 39 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 40 H 0.28 15.93 8.31 -92.71 -0.77 15.16 16 41 H 0.10 5.24 5.64 -2.91 -0.02 5.22 16 42 H 0.13 3.88 8.06 -2.91 -0.02 3.85 16 43 H 0.12 2.76 6.58 -2.39 -0.02 2.75 16 44 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.10 1.77 7.29 -2.39 -0.02 1.76 16 46 H 0.09 1.35 6.19 -2.39 -0.01 1.34 16 47 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -78.67 390.51 5.49 -73.18 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.28 Total: 23.49 kcal Atomic # 6 Polarization: -34.40 SS G_CDS: 5.47 Total: -28.93 kcal Atomic # 7 Polarization: -67.59 SS G_CDS: -1.85 Total: -69.44 kcal Atomic # 8 Polarization: -46.60 SS G_CDS: -0.37 Total: -46.97 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 1.96 Total: 48.67 kcal Total: -78.67 5.49 -73.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129676769.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.985 kcal (2) G-P(sol) polarization free energy of solvation -78.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds