Wall clock time and date at job start Wed Apr 1 2020 04:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.32421 * 120.25820 * 2 1 4 4 C 1.33057 * 121.90564 * 180.02562 * 3 2 1 5 5 S 1.76448 * 129.52458 * 179.97438 * 4 3 2 6 6 C 1.75720 * 90.71837 * 180.02562 * 5 4 3 7 7 C 1.30891 * 109.69972 * 359.97438 * 6 5 4 8 8 N 1.35367 * 121.33607 * 0.02562 * 4 3 2 9 9 C 1.36350 * 118.86460 * 359.73071 * 8 4 3 10 10 O 1.22094 * 120.20164 * 180.27876 * 9 8 4 11 11 C 1.37875 * 120.26130 * 180.02562 * 2 1 3 12 12 C 1.50699 * 120.59286 * 359.95666 * 11 2 1 13 13 C 1.53002 * 109.46965 * 94.99862 * 12 11 2 14 14 N 1.46902 * 109.46925 * 180.02562 * 13 12 11 15 15 C 1.46849 * 111.00297 * 66.04661 * 14 13 12 16 16 C 1.53036 * 109.52756 * 174.15872 * 15 14 13 17 17 C 1.53119 * 109.27519 * 59.18116 * 16 15 14 18 18 C 1.53121 * 109.15970 * 302.34364 * 17 16 15 19 19 H 1.08995 * 109.50849 * 297.67803 * 18 17 16 20 20 C 1.50706 * 109.50230 * 177.59463 * 18 17 16 21 21 H 1.07995 * 120.00167 * 239.72537 * 20 18 17 22 22 C 1.37879 * 119.99394 * 60.00236 * 20 18 17 23 23 N 1.31514 * 120.00338 * 0.02562 * 22 20 18 24 24 Si 1.86800 * 119.99424 * 180.02562 * 22 20 18 25 25 H 1.48490 * 109.47405 * 60.00219 * 24 22 20 26 26 H 1.48503 * 109.46845 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47399 * 299.99813 * 24 22 20 28 28 C 1.46849 * 111.00142 * 301.83655 * 14 13 12 29 29 H 1.08992 * 109.47319 * 269.98437 * 1 2 3 30 30 H 1.09000 * 109.46629 * 29.98091 * 1 2 3 31 31 H 1.08998 * 109.46665 * 149.97961 * 1 2 3 32 32 H 1.07998 * 125.14917 * 180.02562 * 6 5 4 33 33 H 1.08005 * 121.68849 * 180.02562 * 7 6 5 34 34 H 1.09006 * 109.47205 * 335.00169 * 12 11 2 35 35 H 1.08998 * 109.47279 * 215.00394 * 12 11 2 36 36 H 1.08994 * 109.47043 * 60.00443 * 13 12 11 37 37 H 1.08998 * 109.47132 * 300.00034 * 13 12 11 38 38 H 1.09009 * 109.45841 * 54.14270 * 15 14 13 39 39 H 1.08995 * 109.46180 * 294.17984 * 15 14 13 40 40 H 1.09001 * 109.49953 * 299.24157 * 16 15 14 41 41 H 1.08996 * 109.53495 * 179.13942 * 16 15 14 42 42 H 1.09003 * 109.52169 * 182.44314 * 17 16 15 43 43 H 1.08991 * 109.57617 * 62.28297 * 17 16 15 44 44 H 0.96996 * 119.99730 * 179.97438 * 23 22 20 45 45 H 1.09005 * 109.46193 * 65.82456 * 28 14 13 46 46 H 1.09000 * 109.46173 * 305.85568 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1743 1.1438 0.0000 4 6 3.5043 1.1821 -0.0005 5 16 4.5877 2.5748 -0.0012 6 6 5.9881 1.5134 -0.0023 7 6 5.5954 0.2648 -0.0015 8 7 4.2413 0.0466 -0.0016 9 6 3.5980 -1.1556 0.0035 10 8 4.2386 -2.1950 0.0078 11 6 2.2019 -1.1909 -0.0005 12 6 1.4679 -2.5070 -0.0001 13 6 1.3284 -3.0136 -1.4371 14 7 0.6124 -4.2963 -1.4368 15 6 -0.7761 -4.1239 -0.9908 16 6 -1.5297 -5.4473 -1.1412 17 6 -0.8344 -6.5231 -0.3023 18 6 0.6231 -6.6489 -0.7545 19 1 0.6548 -6.9689 -1.7959 20 6 1.3309 -7.6641 0.1056 21 1 2.1928 -7.3721 0.6871 22 6 0.8814 -8.9669 0.1456 23 7 -0.1646 -9.3238 -0.5672 24 14 1.7583 -10.2250 1.2122 25 1 1.7158 -9.7872 2.6305 26 1 1.0845 -11.5418 1.0797 27 1 3.1719 -10.3465 0.7738 28 6 1.3144 -5.2907 -0.6153 29 1 -0.3633 -0.0003 1.0276 30 1 -0.3632 0.8902 -0.5136 31 1 -0.3632 -0.8898 -0.5142 32 1 7.0170 1.8416 -0.0026 33 1 6.3019 -0.5521 -0.0016 34 1 0.4777 -2.3708 0.4348 35 1 2.0265 -3.2344 0.5889 36 1 2.3184 -3.1499 -1.8720 37 1 0.7697 -2.2862 -2.0261 38 1 -1.2603 -3.3591 -1.5982 39 1 -0.7861 -3.8171 0.0550 40 1 -1.5319 -5.7477 -2.1890 41 1 -2.5561 -5.3235 -0.7959 42 1 -1.3423 -7.4776 -0.4406 43 1 -0.8663 -6.2427 0.7504 44 1 -0.4806 -10.2405 -0.5393 45 1 1.2945 -4.9783 0.4289 46 1 2.3484 -5.3734 -0.9499 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595622435.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:10 Heat of formation + Delta-G solvation = 36.533635 kcal Electronic energy + Delta-G solvation = -28411.526902 eV Core-core repulsion = 24621.184116 eV Total energy + Delta-G solvation = -3790.342786 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.66201 -38.86580 -37.94774 -37.79567 -34.49305 -32.95057 -32.06319 -31.38786 -29.79020 -29.49734 -27.67322 -25.66218 -24.87283 -24.00603 -22.99291 -21.82516 -21.40786 -20.69195 -19.36335 -18.84231 -18.29643 -17.10592 -16.94995 -16.31282 -15.71961 -15.25041 -15.02286 -14.61543 -14.38197 -14.20593 -13.99028 -13.94335 -13.72634 -13.53899 -13.28809 -12.90582 -12.73812 -12.45985 -12.13097 -12.02234 -11.99090 -11.94173 -11.83202 -11.42821 -10.95120 -10.83211 -10.60387 -10.59004 -10.45784 -10.43125 -10.21492 -9.95842 -9.74179 -9.56057 -9.38063 -8.94880 -8.62865 -8.23470 -8.04538 -7.39650 -5.90279 -3.95758 -0.18880 0.16796 0.96279 0.97862 1.56366 1.89975 3.21134 3.37494 3.41377 3.44859 3.73509 3.90745 4.43087 4.47856 4.60500 4.66155 4.75029 4.92667 5.02530 5.31947 5.33197 5.39082 5.39666 5.51525 5.54051 5.68011 5.72881 5.85449 5.90644 6.00563 6.02073 6.12241 6.22061 6.39635 6.43129 6.54546 6.64568 6.79099 6.84391 7.08346 7.24796 7.29595 7.46839 7.48795 7.75017 7.83311 7.91763 8.17557 8.25604 8.57055 9.08315 9.68023 11.15734 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.017169 B = 0.002574 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.480470 B =10876.854108 C =12155.474065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.197 3.803 3 N -0.507 5.507 4 C 0.291 3.709 5 S 0.198 5.802 6 C -0.237 4.237 7 C 0.068 3.932 8 N -0.461 5.461 9 C 0.526 3.474 10 O -0.506 6.506 11 C -0.248 4.248 12 C -0.091 4.091 13 C 0.066 3.934 14 N -0.534 5.534 15 C 0.060 3.940 16 C -0.118 4.118 17 C -0.111 4.111 18 C 0.054 3.946 19 H 0.033 0.967 20 C -0.513 4.513 21 H 0.053 0.947 22 C 0.063 3.937 23 N -0.890 5.890 24 Si 0.889 3.111 25 H -0.278 1.278 26 H -0.288 1.288 27 H -0.278 1.278 28 C 0.066 3.934 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.201 0.799 33 H 0.193 0.807 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.025 0.975 40 H 0.060 0.940 41 H 0.045 0.955 42 H 0.090 0.910 43 H 0.029 0.971 44 H 0.259 0.741 45 H 0.023 0.977 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.789 27.431 0.727 28.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.070 3.930 3 N -0.235 5.235 4 C -0.075 4.075 5 S 0.448 5.552 6 C -0.374 4.374 7 C -0.059 4.059 8 N -0.172 5.172 9 C 0.328 3.672 10 O -0.382 6.382 11 C -0.260 4.260 12 C -0.131 4.131 13 C -0.063 4.063 14 N -0.256 5.256 15 C -0.068 4.068 16 C -0.155 4.155 17 C -0.149 4.149 18 C 0.036 3.964 19 H 0.051 0.949 20 C -0.552 4.552 21 H 0.071 0.929 22 C -0.138 4.138 23 N -0.529 5.529 24 Si 0.717 3.283 25 H -0.204 1.204 26 H -0.214 1.214 27 H -0.203 1.203 28 C -0.060 4.060 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.218 0.782 33 H 0.210 0.790 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.044 0.956 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.108 0.892 43 H 0.048 0.952 44 H 0.069 0.931 45 H 0.041 0.959 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.363 28.372 0.188 29.077 hybrid contribution 1.349 -2.436 1.503 3.164 sum 7.712 25.936 1.691 27.111 Atomic orbital electron populations 1.20847 0.87045 1.04523 1.04005 1.21276 0.97265 0.86260 0.88173 1.67977 1.01063 1.29341 1.25073 1.26096 0.93416 0.90752 0.97280 1.85254 0.90915 1.00021 1.78996 1.25123 1.04881 0.94529 1.12863 1.20898 0.84447 0.99810 1.00750 1.45321 1.06913 1.09639 1.55364 1.17236 0.89185 0.81144 0.79606 1.91034 1.67643 1.29488 1.50035 1.21273 0.90886 0.98294 1.15562 1.21011 0.99309 0.91702 1.01068 1.22163 0.99374 0.91289 0.93507 1.62258 1.02007 1.06819 1.54519 1.22067 0.89436 0.98211 0.97122 1.21674 0.97088 0.95276 1.01498 1.21648 0.99002 0.98268 0.95950 1.18668 0.91320 0.88998 0.97455 0.94897 1.21140 1.13216 0.93959 1.26839 0.92921 1.24923 0.95071 0.98210 0.95617 1.69882 1.24316 1.17960 1.40710 0.86707 0.79904 0.80650 0.81013 1.20410 1.21354 1.20329 1.22327 0.97362 0.93229 0.93128 0.89290 0.89741 0.89207 0.78167 0.79042 0.90283 0.89588 0.91135 0.91752 0.92525 0.95640 0.92154 0.93596 0.89157 0.95199 0.93088 0.95867 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 9.42 36.01 0.34 -0.63 16 2 C 0.20 2.37 6.81 -82.47 -0.56 1.81 16 3 N -0.51 -5.98 10.36 -9.01 -0.09 -6.08 16 4 C 0.29 3.11 8.32 -87.90 -0.73 2.38 16 5 S 0.20 1.25 23.37 -107.50 -2.51 -1.27 16 6 C -0.24 -1.17 11.11 29.04 0.32 -0.85 16 7 C 0.07 0.55 10.46 -16.86 -0.18 0.38 16 8 N -0.46 -5.42 2.82 -66.36 -0.19 -5.61 16 9 C 0.53 8.00 7.50 -15.01 -0.11 7.88 16 10 O -0.51 -9.31 16.68 4.83 0.08 -9.23 16 11 C -0.25 -3.53 5.17 -104.23 -0.54 -4.07 16 12 C -0.09 -1.39 3.76 -27.88 -0.10 -1.49 16 13 C 0.07 1.07 5.30 -3.82 -0.02 1.05 16 14 N -0.53 -10.26 4.86 -234.66 -1.14 -11.40 16 15 C 0.06 1.04 5.05 -3.83 -0.02 1.02 16 16 C -0.12 -2.32 6.09 -26.65 -0.16 -2.48 16 17 C -0.11 -2.67 5.02 -26.61 -0.13 -2.80 16 18 C 0.05 1.41 2.26 -91.69 -0.21 1.20 16 19 H 0.03 0.95 8.14 -51.93 -0.42 0.52 16 20 C -0.51 -14.58 8.56 -34.44 -0.29 -14.87 16 21 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 22 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 23 N -0.89 -25.96 11.35 55.43 0.63 -25.33 16 24 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 28 C 0.07 1.49 4.06 -3.83 -0.02 1.48 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.81 6.44 -51.93 -0.33 0.48 16 32 H 0.20 0.24 8.06 -52.49 -0.42 -0.19 16 33 H 0.19 1.36 8.00 -52.48 -0.42 0.94 16 34 H 0.08 1.09 5.04 -51.93 -0.26 0.83 16 35 H 0.09 1.56 6.13 -51.93 -0.32 1.25 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.06 0.92 7.87 -51.93 -0.41 0.51 16 38 H 0.06 0.84 8.06 -51.92 -0.42 0.42 16 39 H 0.03 0.43 6.75 -51.93 -0.35 0.08 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 43 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.02 0.53 6.61 -51.93 -0.34 0.18 16 46 H 0.06 1.38 8.12 -51.93 -0.42 0.96 16 LS Contribution 374.80 15.07 5.65 5.65 Total: -1.00 -33.50 374.80 -11.63 -45.13 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -6.52 Total: -0.46 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -2.51 Total: -8.31 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: -0.79 Total: -48.41 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.08 Total: -9.23 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.51 Total: -1.27 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.50 -11.63 -45.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595622435.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.664 kcal (2) G-P(sol) polarization free energy of solvation -33.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds