Wall clock time and date at job start Wed Apr 1 2020 05:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32861 * 1 3 3 C 1.47113 * 119.99993 * 2 1 4 4 C 1.50703 * 120.00046 * 5.49005 * 3 2 1 5 5 C 1.32873 * 120.00364 * 185.49244 * 3 2 1 6 6 C 1.50704 * 119.99672 * 6.24755 * 5 3 2 7 7 C 1.50702 * 109.46772 * 126.12234 * 6 5 3 8 8 O 1.21282 * 120.00477 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99652 * 179.97438 * 7 6 5 10 10 C 1.47065 * 120.79251 * 179.97438 * 9 7 6 11 11 C 1.53299 * 108.60275 * 115.31763 * 10 9 7 12 12 C 1.50980 * 108.96542 * 45.05719 * 11 10 9 13 13 S 1.75957 * 126.03133 * 162.31806 * 12 11 10 14 14 C 1.70907 * 90.30834 * 179.63283 * 13 12 11 15 15 C 1.50696 * 124.92639 * 180.08424 * 14 13 12 16 16 N 1.46509 * 109.47383 * 269.99996 * 15 14 13 17 17 C 1.36933 * 120.00038 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00116 * 0.02562 * 17 16 15 19 19 C 1.38815 * 119.99752 * 180.02562 * 17 16 15 20 20 N 1.31612 * 119.99974 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99882 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47308 * 59.99650 * 21 19 17 23 23 H 1.48495 * 109.47351 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46909 * 299.99961 * 21 19 17 25 25 N 1.28682 * 110.14357 * 0.06741 * 14 13 12 26 26 C 1.32437 * 117.82419 * 0.07584 * 25 14 13 27 27 C 1.47030 * 120.80084 * 0.02889 * 9 7 6 28 28 H 1.08003 * 120.00068 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.00392 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.00037 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47110 * 270.00059 * 4 3 2 32 32 H 1.08997 * 109.47020 * 30.00638 * 4 3 2 33 33 H 1.09000 * 109.47013 * 150.00196 * 4 3 2 34 34 H 1.08001 * 120.00416 * 186.24675 * 5 3 2 35 35 H 1.09002 * 109.47079 * 6.12477 * 6 5 3 36 36 H 1.08995 * 109.46893 * 246.12607 * 6 5 3 37 37 H 1.08998 * 109.61801 * 355.57914 * 10 9 7 38 38 H 1.09007 * 109.61280 * 235.04295 * 10 9 7 39 39 H 1.08998 * 109.55576 * 285.20952 * 11 10 9 40 40 H 1.09007 * 109.55429 * 164.90318 * 11 10 9 41 41 H 1.08999 * 109.47043 * 30.00236 * 15 14 13 42 42 H 1.09001 * 109.47067 * 150.00177 * 15 14 13 43 43 H 0.97003 * 119.99569 * 0.02562 * 16 15 14 44 44 H 0.96999 * 120.00320 * 180.02562 * 20 19 17 45 45 H 1.09002 * 109.82168 * 105.66829 * 27 9 7 46 46 H 1.09004 * 109.80707 * 344.76845 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3286 0.0000 0.0000 3 6 2.0642 1.2740 0.0000 4 6 1.3159 2.5762 0.1249 5 6 3.3883 1.2768 -0.1101 6 6 4.1249 -0.0108 -0.3761 7 6 5.0036 0.1545 -1.5892 8 8 5.0295 1.2137 -2.1795 9 7 5.7614 -0.8744 -2.0177 10 6 6.6247 -0.7326 -3.1998 11 6 8.0861 -0.8676 -2.7570 12 6 8.2070 -2.0413 -1.8151 13 16 9.6967 -2.8713 -1.3815 14 6 8.8226 -3.9253 -0.3586 15 6 9.4311 -5.0349 0.4596 16 7 9.4500 -6.2694 -0.3291 17 6 9.9608 -7.4193 0.2112 18 1 10.3493 -7.4163 1.2188 19 6 9.9792 -8.5888 -0.5364 20 7 9.5061 -8.5924 -1.7645 21 14 10.6753 -10.1577 0.2009 22 1 9.9010 -10.5201 1.4152 23 1 10.5794 -11.2567 -0.7930 24 1 12.0984 -9.9434 0.5670 25 7 7.5697 -3.6336 -0.3884 26 6 7.1873 -2.6277 -1.1603 27 6 5.7439 -2.1660 -1.3152 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5401 0.9353 -0.0004 30 1 1.8686 -0.9353 0.0004 31 1 1.0503 2.9393 -0.8680 32 1 0.4091 2.4195 0.7091 33 1 1.9470 3.3115 0.6238 34 1 3.9368 2.2017 -0.0091 35 1 3.4060 -0.8105 -0.5544 36 1 4.7409 -0.2619 0.4873 37 1 6.4683 0.2469 -3.6517 38 1 6.3875 -1.5139 -3.9219 39 1 8.3984 0.0435 -2.2467 40 1 8.7179 -1.0336 -3.6297 41 1 10.4501 -4.7651 0.7367 42 1 8.8380 -5.1888 1.3611 43 1 9.1006 -6.2722 -1.2341 44 1 9.5186 -9.4096 -2.2868 45 1 5.1825 -2.8962 -1.8981 46 1 5.2868 -2.0460 -0.3330 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001750938733.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:35 Heat of formation + Delta-G solvation = 60.126106 kcal Electronic energy + Delta-G solvation = -26815.126102 eV Core-core repulsion = 23025.806362 eV Total energy + Delta-G solvation = -3789.319740 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.71368 -39.39034 -37.34803 -36.45460 -34.69519 -33.08797 -32.03627 -31.57293 -30.18902 -29.80153 -26.84744 -26.65131 -25.33225 -23.68355 -23.05441 -22.11633 -21.77422 -19.85073 -18.27019 -18.20467 -17.83294 -17.28747 -16.88228 -16.43568 -16.23775 -15.43435 -15.06092 -14.98994 -14.63290 -14.35563 -14.10807 -13.73866 -13.63250 -13.61580 -13.42301 -13.05057 -12.86454 -12.74286 -12.60837 -12.57039 -12.40987 -12.22844 -11.91072 -11.79562 -11.47724 -11.10742 -10.98775 -10.95412 -10.84466 -10.75357 -10.21365 -10.10255 -9.85535 -9.36070 -9.11814 -8.96298 -8.93327 -8.52917 -8.46526 -7.06096 -5.83469 -3.15139 0.85605 1.03583 1.50700 1.96600 2.35661 2.54687 2.82269 2.88538 3.41052 3.45287 3.46471 4.04188 4.28534 4.32419 4.54528 4.55897 4.63440 4.69259 4.77987 4.91911 5.00380 5.01053 5.13623 5.18800 5.21810 5.24473 5.29812 5.34470 5.40570 5.46626 5.49122 5.52846 5.66708 5.70978 5.76229 5.95883 6.05326 6.10752 6.14155 6.14799 6.38365 6.40766 6.43535 6.62984 7.06880 7.61403 7.86707 7.97384 8.32076 9.44479 9.95238 10.31672 11.38711 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.014820 B = 0.002135 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.883771 B =13109.564627 C =14332.955542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.128 4.128 3 C -0.108 4.108 4 C -0.115 4.115 5 C -0.119 4.119 6 C -0.121 4.121 7 C 0.527 3.473 8 O -0.537 6.537 9 N -0.613 5.613 10 C 0.115 3.885 11 C -0.053 4.053 12 C -0.237 4.237 13 S 0.137 5.863 14 C 0.076 3.924 15 C 0.224 3.776 16 N -0.723 5.723 17 C -0.246 4.246 18 H 0.074 0.926 19 C -0.009 4.009 20 N -0.930 5.930 21 Si 0.912 3.088 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.284 1.284 25 N -0.464 5.464 26 C 0.045 3.955 27 C 0.192 3.808 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.118 0.882 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.120 0.880 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.043 0.957 42 H 0.054 0.946 43 H 0.387 0.613 44 H 0.257 0.743 45 H 0.093 0.907 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.385 21.642 0.688 24.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.146 4.146 3 C -0.108 4.108 4 C -0.171 4.171 5 C -0.138 4.138 6 C -0.160 4.160 7 C 0.316 3.684 8 O -0.413 6.413 9 N -0.347 5.347 10 C -0.008 4.008 11 C -0.093 4.093 12 C -0.359 4.359 13 S 0.395 5.605 14 C -0.203 4.203 15 C 0.094 3.906 16 N -0.369 5.369 17 C -0.377 4.377 18 H 0.092 0.908 19 C -0.206 4.206 20 N -0.577 5.577 21 Si 0.743 3.257 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.211 1.211 25 N -0.178 5.178 26 C -0.088 4.088 27 C 0.067 3.933 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.136 0.864 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.138 0.862 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.221 0.779 44 H 0.067 0.933 45 H 0.111 0.889 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.548 21.854 0.557 24.724 hybrid contribution -0.431 -0.985 -0.002 1.075 sum -11.980 20.869 0.555 24.069 Atomic orbital electron populations 1.24445 0.95746 1.02108 0.99499 1.21986 0.95432 0.96329 1.00824 1.20578 0.93830 0.94420 1.01977 1.20783 1.00051 0.94135 1.02154 1.22769 0.94015 0.97602 0.99381 1.20908 0.99148 0.98977 0.97002 1.20501 0.79637 0.82850 0.85397 1.90688 1.66357 1.26365 1.57917 1.48104 1.44161 1.12619 1.29844 1.21656 0.87995 1.04120 0.87075 1.20462 0.97494 0.94062 0.97285 1.25842 0.96085 1.05673 1.08264 1.83971 1.10517 1.25314 1.40694 1.27306 0.90978 1.01269 1.00769 1.19341 0.96499 0.82445 0.92354 1.42257 1.74881 1.04146 1.15605 1.19151 1.33222 0.87064 0.98227 0.90784 1.24780 1.01477 0.98045 0.96279 1.69663 1.51192 1.27675 1.09204 0.86197 0.78798 0.82809 0.77923 1.21092 1.21634 1.21101 1.65777 1.15856 1.15228 1.20938 1.20826 0.96564 0.94460 0.96995 1.20271 0.90552 0.84119 0.98385 0.88043 0.88116 0.86413 0.91263 0.91754 0.91613 0.86192 0.87657 0.87594 0.87898 0.90357 0.89946 0.89186 0.93965 0.92857 0.77945 0.93285 0.88909 0.87817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.24 14.07 28.88 0.41 -0.83 16 2 C -0.13 -1.00 9.20 -37.84 -0.35 -1.35 16 3 C -0.11 -0.91 5.98 -102.87 -0.61 -1.53 16 4 C -0.11 -0.79 9.38 36.01 0.34 -0.45 16 5 C -0.12 -1.09 8.43 -36.16 -0.30 -1.39 16 6 C -0.12 -1.04 4.32 -29.03 -0.13 -1.17 16 7 C 0.53 5.93 7.70 -10.98 -0.08 5.85 16 8 O -0.54 -7.64 15.46 5.56 0.09 -7.56 16 9 N -0.61 -6.58 2.92 -173.02 -0.50 -7.08 16 10 C 0.12 1.16 6.41 -3.58 -0.02 1.14 16 11 C -0.05 -0.55 6.44 -27.59 -0.18 -0.73 16 12 C -0.24 -3.23 6.43 -35.45 -0.23 -3.46 16 13 S 0.14 2.06 23.17 -107.50 -2.49 -0.43 16 14 C 0.08 1.37 6.75 -13.60 -0.09 1.28 16 15 C 0.22 4.54 6.84 -5.19 -0.04 4.50 16 16 N -0.72 -18.27 5.59 -61.08 -0.34 -18.61 16 17 C -0.25 -6.75 9.99 -15.06 -0.15 -6.90 16 18 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 19 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 20 N -0.93 -27.88 13.06 55.49 0.72 -27.15 16 21 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 N -0.46 -8.18 10.51 -7.27 -0.08 -8.25 16 26 C 0.05 0.66 6.87 -82.80 -0.57 0.09 16 27 C 0.19 2.11 6.65 -4.09 -0.03 2.08 16 28 H 0.10 0.58 8.06 -52.48 -0.42 0.16 16 29 H 0.10 0.61 6.31 -52.49 -0.33 0.28 16 30 H 0.12 0.82 6.00 -52.49 -0.31 0.50 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.38 6.67 -51.93 -0.35 0.03 16 33 H 0.06 0.42 8.06 -51.93 -0.42 0.00 16 34 H 0.12 1.13 8.04 -52.49 -0.42 0.71 16 35 H 0.11 0.76 5.36 -51.93 -0.28 0.48 16 36 H 0.11 0.79 7.57 -51.93 -0.39 0.40 16 37 H 0.10 1.03 7.01 -51.93 -0.36 0.67 16 38 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.39 10.50 7.66 -40.82 -0.31 10.19 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.10 0.95 6.15 -51.93 -0.32 0.63 16 LS Contribution 392.56 15.07 5.92 5.92 Total: -1.00 -33.05 392.56 -10.27 -43.32 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -6.43 Total: 6.09 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -2.13 Total: -3.22 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: -0.20 Total: -61.10 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: 0.09 Total: -7.56 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.49 Total: -0.43 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.05 -10.27 -43.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001750938733.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.446 kcal (2) G-P(sol) polarization free energy of solvation -33.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds