Wall clock time and date at job start Wed Apr 1 2020 05:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32861 * 1 3 3 C 1.47113 * 119.99993 * 2 1 4 4 C 1.50703 * 120.00046 * 5.49005 * 3 2 1 5 5 C 1.32873 * 120.00364 * 185.49244 * 3 2 1 6 6 C 1.50704 * 119.99672 * 6.24755 * 5 3 2 7 7 C 1.50702 * 109.46772 * 126.12234 * 6 5 3 8 8 O 1.21282 * 120.00477 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99652 * 179.97438 * 7 6 5 10 10 C 1.47065 * 120.79251 * 179.97438 * 9 7 6 11 11 C 1.53299 * 108.60275 * 115.31763 * 10 9 7 12 12 C 1.50980 * 108.96542 * 45.05719 * 11 10 9 13 13 S 1.75957 * 126.03133 * 162.31806 * 12 11 10 14 14 C 1.70907 * 90.30834 * 179.63283 * 13 12 11 15 15 C 1.50696 * 124.92639 * 180.08424 * 14 13 12 16 16 N 1.46509 * 109.47383 * 269.99996 * 15 14 13 17 17 C 1.36933 * 120.00038 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00116 * 0.02562 * 17 16 15 19 19 C 1.38815 * 119.99752 * 180.02562 * 17 16 15 20 20 N 1.31612 * 119.99974 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99882 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47308 * 59.99650 * 21 19 17 23 23 H 1.48495 * 109.47351 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46909 * 299.99961 * 21 19 17 25 25 N 1.28682 * 110.14357 * 0.06741 * 14 13 12 26 26 C 1.32437 * 117.82419 * 0.07584 * 25 14 13 27 27 C 1.47030 * 120.80084 * 0.02889 * 9 7 6 28 28 H 1.08003 * 120.00068 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.00392 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.00037 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47110 * 270.00059 * 4 3 2 32 32 H 1.08997 * 109.47020 * 30.00638 * 4 3 2 33 33 H 1.09000 * 109.47013 * 150.00196 * 4 3 2 34 34 H 1.08001 * 120.00416 * 186.24675 * 5 3 2 35 35 H 1.09002 * 109.47079 * 6.12477 * 6 5 3 36 36 H 1.08995 * 109.46893 * 246.12607 * 6 5 3 37 37 H 1.08998 * 109.61801 * 355.57914 * 10 9 7 38 38 H 1.09007 * 109.61280 * 235.04295 * 10 9 7 39 39 H 1.08998 * 109.55576 * 285.20952 * 11 10 9 40 40 H 1.09007 * 109.55429 * 164.90318 * 11 10 9 41 41 H 1.08999 * 109.47043 * 30.00236 * 15 14 13 42 42 H 1.09001 * 109.47067 * 150.00177 * 15 14 13 43 43 H 0.97003 * 119.99569 * 0.02562 * 16 15 14 44 44 H 0.96999 * 120.00320 * 180.02562 * 20 19 17 45 45 H 1.09002 * 109.82168 * 105.66829 * 27 9 7 46 46 H 1.09004 * 109.80707 * 344.76845 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3286 0.0000 0.0000 3 6 2.0642 1.2740 0.0000 4 6 1.3159 2.5762 0.1249 5 6 3.3883 1.2768 -0.1101 6 6 4.1249 -0.0108 -0.3761 7 6 5.0036 0.1545 -1.5892 8 8 5.0295 1.2137 -2.1795 9 7 5.7614 -0.8744 -2.0177 10 6 6.6247 -0.7326 -3.1998 11 6 8.0861 -0.8676 -2.7570 12 6 8.2070 -2.0413 -1.8151 13 16 9.6967 -2.8713 -1.3815 14 6 8.8226 -3.9253 -0.3586 15 6 9.4311 -5.0349 0.4596 16 7 9.4500 -6.2694 -0.3291 17 6 9.9608 -7.4193 0.2112 18 1 10.3493 -7.4163 1.2188 19 6 9.9792 -8.5888 -0.5364 20 7 9.5061 -8.5924 -1.7645 21 14 10.6753 -10.1577 0.2009 22 1 9.9010 -10.5201 1.4152 23 1 10.5794 -11.2567 -0.7930 24 1 12.0984 -9.9434 0.5670 25 7 7.5697 -3.6336 -0.3884 26 6 7.1873 -2.6277 -1.1603 27 6 5.7439 -2.1660 -1.3152 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5401 0.9353 -0.0004 30 1 1.8686 -0.9353 0.0004 31 1 1.0503 2.9393 -0.8680 32 1 0.4091 2.4195 0.7091 33 1 1.9470 3.3115 0.6238 34 1 3.9368 2.2017 -0.0091 35 1 3.4060 -0.8105 -0.5544 36 1 4.7409 -0.2619 0.4873 37 1 6.4683 0.2469 -3.6517 38 1 6.3875 -1.5139 -3.9219 39 1 8.3984 0.0435 -2.2467 40 1 8.7179 -1.0336 -3.6297 41 1 10.4501 -4.7651 0.7367 42 1 8.8380 -5.1888 1.3611 43 1 9.1006 -6.2722 -1.2341 44 1 9.5186 -9.4096 -2.2868 45 1 5.1825 -2.8962 -1.8981 46 1 5.2868 -2.0460 -0.3330 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001750938733.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:34 Heat of formation + Delta-G solvation = 40.384498 kcal Electronic energy + Delta-G solvation = -26815.982163 eV Core-core repulsion = 23025.806362 eV Total energy + Delta-G solvation = -3790.175800 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.68411 -40.46675 -38.05154 -37.46231 -36.45085 -34.00645 -33.46218 -32.61161 -31.18590 -30.74478 -28.42723 -27.48122 -26.13733 -25.38151 -24.10250 -23.25946 -22.65474 -20.84629 -19.59664 -19.25453 -18.95504 -18.46735 -17.86127 -17.30478 -17.03529 -16.80504 -16.27752 -16.01177 -15.79491 -15.38109 -15.33524 -15.04610 -14.91925 -14.63384 -14.27112 -14.05750 -14.01571 -13.81597 -13.58903 -13.44885 -13.21722 -13.11899 -12.97232 -12.95988 -12.72847 -12.51111 -12.34185 -12.18475 -12.13266 -11.88139 -11.53688 -11.33551 -11.02154 -10.99180 -10.61034 -10.23233 -9.90080 -9.63604 -9.13099 -9.09927 -7.96832 -5.29024 -0.36764 0.31674 0.43587 0.74677 1.49224 1.49750 1.52943 1.58482 1.65524 1.77545 2.18135 2.56204 2.94502 3.37666 3.47649 3.70211 3.71629 3.81370 3.86584 3.99788 4.07018 4.13531 4.17476 4.25929 4.29855 4.40256 4.49573 4.53810 4.56212 4.67661 4.70908 4.77213 4.78403 4.81453 4.84478 4.87550 4.95040 5.14115 5.15574 5.27405 5.47534 5.49077 5.57942 5.82284 6.03851 6.21063 6.21681 6.72935 7.02587 7.29067 7.95043 8.22256 9.26202 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.014820 B = 0.002135 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.883771 B =13109.564627 C =14332.955542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.149 4.149 3 C -0.107 4.107 4 C -0.117 4.117 5 C -0.140 4.140 6 C -0.116 4.116 7 C 0.527 3.473 8 O -0.570 6.570 9 N -0.611 5.611 10 C 0.114 3.886 11 C -0.050 4.050 12 C -0.225 4.225 13 S 0.161 5.839 14 C 0.038 3.962 15 C 0.227 3.773 16 N -0.736 5.736 17 C -0.249 4.249 18 H 0.085 0.915 19 C -0.072 4.072 20 N -0.969 5.969 21 Si 0.980 3.020 22 H -0.277 1.277 23 H -0.297 1.297 24 H -0.274 1.274 25 N -0.479 5.479 26 C 0.027 3.973 27 C 0.197 3.803 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.125 0.875 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.056 0.944 42 H 0.050 0.950 43 H 0.373 0.627 44 H 0.252 0.748 45 H 0.103 0.897 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.051 22.320 1.087 25.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C -0.107 4.107 4 C -0.174 4.174 5 C -0.158 4.158 6 C -0.154 4.154 7 C 0.317 3.683 8 O -0.449 6.449 9 N -0.344 5.344 10 C -0.010 4.010 11 C -0.090 4.090 12 C -0.347 4.347 13 S 0.419 5.581 14 C -0.240 4.240 15 C 0.098 3.902 16 N -0.380 5.380 17 C -0.381 4.381 18 H 0.103 0.897 19 C -0.265 4.265 20 N -0.619 5.619 21 Si 0.808 3.192 22 H -0.203 1.203 23 H -0.223 1.223 24 H -0.200 1.200 25 N -0.194 5.194 26 C -0.106 4.106 27 C 0.071 3.929 28 H 0.131 0.869 29 H 0.126 0.874 30 H 0.143 0.857 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.128 0.872 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.123 0.877 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.128 0.872 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.205 0.795 44 H 0.061 0.939 45 H 0.121 0.879 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.202 22.549 1.005 25.659 hybrid contribution -0.296 -1.038 -0.144 1.089 sum -12.498 21.511 0.862 24.893 Atomic orbital electron populations 1.24669 0.95543 1.03077 0.97570 1.22113 0.95961 0.96318 1.02286 1.20831 0.93824 0.95357 1.00677 1.20839 1.00474 0.93637 1.02436 1.22751 0.94398 0.97554 1.01134 1.20918 0.99108 0.99302 0.96106 1.20936 0.79489 0.82224 0.85639 1.90672 1.67512 1.27596 1.59115 1.48148 1.44041 1.12450 1.29798 1.21732 0.87549 1.04610 0.87128 1.20604 0.98269 0.92816 0.97332 1.26319 0.95116 1.05677 1.07569 1.83780 1.10706 1.24232 1.39432 1.26847 0.91909 1.02408 1.02863 1.19298 0.97277 0.81613 0.92043 1.42417 1.74653 1.05434 1.15464 1.19609 1.32033 0.87905 0.98515 0.89743 1.25645 1.02663 1.01375 0.96813 1.69829 1.53253 1.28100 1.10685 0.85124 0.78495 0.78570 0.76999 1.20266 1.22291 1.19979 1.65737 1.15967 1.16136 1.21579 1.21306 0.98428 0.94050 0.96825 1.20382 0.88575 0.84230 0.99674 0.86867 0.87435 0.85731 0.91197 0.90622 0.91325 0.87189 0.86094 0.86435 0.87720 0.89398 0.89234 0.87217 0.92618 0.93249 0.79513 0.93887 0.87902 0.85986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 14.07 66.64 0.94 -1.05 16 2 C -0.15 -2.08 9.20 23.42 0.22 -1.86 16 3 C -0.11 -1.69 5.98 -18.71 -0.11 -1.80 16 4 C -0.12 -1.49 9.38 71.24 0.67 -0.82 16 5 C -0.14 -2.46 8.43 24.51 0.21 -2.25 16 6 C -0.12 -1.82 4.32 29.10 0.13 -1.69 16 7 C 0.53 11.18 7.70 87.66 0.67 11.85 16 8 O -0.57 -15.86 15.46 -3.04 -0.05 -15.91 16 9 N -0.61 -12.03 2.92 -819.70 -2.39 -14.42 16 10 C 0.11 2.07 6.41 86.37 0.55 2.63 16 11 C -0.05 -0.93 6.44 30.04 0.19 -0.74 16 12 C -0.22 -5.78 6.43 24.95 0.16 -5.62 16 13 S 0.16 4.68 23.17 -56.49 -1.31 3.37 16 14 C 0.04 1.36 6.75 88.57 0.60 1.96 16 15 C 0.23 9.24 6.84 85.63 0.59 9.82 16 16 N -0.74 -37.64 5.59 -347.17 -1.94 -39.58 16 17 C -0.25 -13.71 9.99 84.03 0.84 -12.87 16 18 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 19 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 20 N -0.97 -59.08 13.06 21.65 0.28 -58.80 16 21 Si 0.98 45.37 29.55 68.60 2.03 47.39 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 23 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 25 N -0.48 -16.67 10.51 -176.92 -1.86 -18.53 16 26 C 0.03 0.75 6.87 42.16 0.29 1.04 16 27 C 0.20 3.95 6.65 86.06 0.57 4.52 16 28 H 0.11 1.03 8.06 -2.91 -0.02 1.01 16 29 H 0.11 1.07 6.31 -2.91 -0.02 1.05 16 30 H 0.13 1.49 6.00 -2.91 -0.02 1.47 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 0.77 6.67 -2.39 -0.02 0.75 16 33 H 0.07 0.82 8.06 -2.39 -0.02 0.80 16 34 H 0.11 2.09 8.04 -2.91 -0.02 2.07 16 35 H 0.12 1.50 5.36 -2.39 -0.01 1.49 16 36 H 0.12 1.56 7.57 -2.39 -0.02 1.54 16 37 H 0.10 1.94 7.01 -2.39 -0.02 1.92 16 38 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16 41 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.37 20.75 7.66 -92.71 -0.71 20.04 16 44 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 45 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.12 1.98 6.15 -2.39 -0.01 1.97 16 Total: -1.00 -71.14 392.56 2.04 -69.10 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 0.30 Total: 27.91 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: 6.98 Total: -0.54 kcal Atomic # 7 Polarization: -125.42 SS G_CDS: -5.91 Total: -131.33 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.05 Total: -15.91 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Atomic # 16 Polarization: 4.68 SS G_CDS: -1.31 Total: 3.37 kcal Total: -71.14 2.04 -69.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001750938733.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.482 kcal (2) G-P(sol) polarization free energy of solvation -71.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds