Wall clock time and date at job start Wed Apr 1 2020 05:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47096 * 2 1 4 4 O 1.45201 * 109.47022 * 119.99821 * 2 1 3 5 5 C 1.34230 * 117.00054 * 150.00432 * 4 2 1 6 6 O 1.20832 * 119.99835 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00252 * 179.97438 * 5 4 2 8 8 C 1.52994 * 109.47379 * 179.97438 * 7 5 4 9 9 N 1.46497 * 109.47283 * 179.97438 * 8 7 5 10 10 C 1.34780 * 120.00068 * 179.72438 * 9 8 7 11 11 O 1.21718 * 119.99956 * 0.02562 * 10 9 8 12 12 C 1.46256 * 119.99800 * 180.02562 * 10 9 8 13 13 C 1.35022 * 119.99894 * 180.02562 * 12 10 9 14 14 C 1.46957 * 120.00300 * 180.02562 * 13 12 10 15 15 C 1.40029 * 120.09915 * 359.72225 * 14 13 12 16 16 C 1.37601 * 119.89798 * 179.69970 * 15 14 13 17 17 C 1.39180 * 120.09887 * 0.60088 * 16 15 14 18 18 O 1.35565 * 119.89376 * 179.69676 * 17 16 15 19 19 C 1.34792 * 116.99720 * 174.42235 * 18 17 16 20 20 H 1.07998 * 119.99415 * 5.05109 * 19 18 17 21 21 C 1.38711 * 120.00019 * 185.05884 * 19 18 17 22 22 N 1.31509 * 120.00308 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00153 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46612 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47242 * 119.99850 * 23 21 19 26 26 H 1.48501 * 109.46802 * 239.99820 * 23 21 19 27 27 C 1.39171 * 120.20408 * 359.67315 * 17 16 15 28 28 C 1.37600 * 120.10110 * 0.02662 * 27 17 16 29 29 H 1.08993 * 109.47009 * 300.00654 * 1 2 3 30 30 H 1.09003 * 109.47097 * 60.00421 * 1 2 3 31 31 H 1.08998 * 109.46992 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47397 * 240.00134 * 2 1 3 33 33 H 1.09002 * 109.47131 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46804 * 299.99758 * 3 2 1 35 35 H 1.08989 * 109.47286 * 59.99616 * 3 2 1 36 36 H 1.08999 * 109.47049 * 59.99602 * 7 5 4 37 37 H 1.09000 * 109.46912 * 299.99874 * 7 5 4 38 38 H 1.08999 * 109.46934 * 60.00047 * 8 7 5 39 39 H 1.09000 * 109.47417 * 300.00080 * 8 7 5 40 40 H 0.97000 * 119.99919 * 0.02562 * 9 8 7 41 41 H 1.08004 * 120.00191 * 0.02562 * 12 10 9 42 42 H 1.08004 * 119.99914 * 359.97438 * 13 12 10 43 43 H 1.08004 * 120.05337 * 359.97438 * 15 14 13 44 44 H 1.07999 * 119.94808 * 180.27028 * 16 15 14 45 45 H 0.96998 * 120.00252 * 180.02562 * 22 21 19 46 46 H 1.08001 * 119.94985 * 180.02562 * 27 17 16 47 47 H 1.07997 * 120.05103 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 3.1937 -1.3169 1.0852 6 8 3.8015 -1.2996 0.0411 7 6 3.7600 -2.0486 2.2747 8 6 5.1022 -2.6772 1.8952 9 7 5.6530 -3.3880 3.0517 10 6 6.8347 -4.0280 2.9492 11 8 7.4444 -4.0151 1.8958 12 6 7.3843 -4.7381 4.1037 13 6 8.5683 -5.3789 4.0012 14 6 9.1204 -6.0928 5.1610 15 6 8.4230 -6.1050 6.3752 16 6 8.9407 -6.7800 7.4568 17 6 10.1616 -7.4395 7.3488 18 8 10.6707 -8.0980 8.4188 19 6 11.7965 -8.8118 8.2190 20 1 12.2965 -8.7751 7.2624 21 6 12.3127 -9.5936 9.2419 22 7 11.7041 -9.6381 10.4069 23 14 13.8733 -10.5824 8.9653 24 1 14.3601 -10.3614 7.5799 25 1 14.9133 -10.1463 9.9314 26 1 13.5866 -12.0258 9.1646 27 6 10.8610 -7.4252 6.1457 28 6 10.3481 -6.7580 5.0571 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8898 36 1 3.0670 -2.8312 2.5835 37 1 3.9061 -1.3477 3.0966 38 1 5.7954 -1.8948 1.5862 39 1 4.9558 -3.3782 1.0735 40 1 5.1652 -3.4016 3.8900 41 1 6.8430 -4.7499 5.0383 42 1 9.1094 -5.3674 3.0665 43 1 7.4780 -5.5892 6.4614 44 1 8.4014 -6.7936 8.3923 45 1 12.0653 -10.1845 11.1223 46 1 11.8079 -7.9387 6.0664 47 1 10.8914 -6.7479 4.1238 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052970898.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:37 Heat of formation + Delta-G solvation = -122.878320 kcal Electronic energy + Delta-G solvation = -27523.850939 eV Core-core repulsion = 23251.549909 eV Total energy + Delta-G solvation = -4272.301029 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.05971 -39.61139 -39.12933 -37.48643 -36.91110 -35.35905 -33.71006 -33.22107 -32.32937 -31.36627 -30.43691 -28.28747 -27.84529 -25.85492 -25.24888 -23.11054 -22.23889 -22.00755 -21.01793 -20.77047 -19.36102 -18.30901 -18.16424 -17.19115 -17.11301 -16.97482 -16.53461 -15.72979 -15.52702 -14.95837 -14.81945 -14.70104 -14.42106 -14.21165 -14.03611 -13.91670 -13.81767 -13.46250 -13.33049 -13.04981 -12.85441 -12.70323 -12.60316 -12.37498 -12.28984 -11.99518 -11.95053 -11.75357 -11.72274 -11.45943 -11.15222 -11.10402 -11.08446 -10.88213 -10.67127 -10.53730 -9.84210 -9.62149 -9.50378 -9.21572 -8.86423 -8.39144 -7.12600 -6.66189 -4.21034 1.05703 1.75016 2.05592 2.12713 2.54531 3.03064 3.04439 3.10137 3.24134 3.56527 3.81543 4.08976 4.23313 4.34555 4.37713 4.49724 4.51669 4.58988 4.86264 4.91436 4.98019 5.00199 5.03546 5.15986 5.19875 5.26257 5.28085 5.43677 5.48369 5.51724 5.55642 5.59521 5.65868 5.68893 6.00312 6.03123 6.10814 6.25723 6.45221 6.47037 6.59646 6.78185 6.91177 7.12162 7.22703 7.27032 7.29347 7.48114 7.62981 7.79350 8.30430 8.78826 9.45573 10.50499 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.042439 B = 0.001222 C = 0.001196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.619861 B =22908.101280 C =23397.009425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 C -0.171 4.171 4 O -0.354 6.354 5 C 0.467 3.533 6 O -0.501 6.501 7 C -0.127 4.127 8 C 0.132 3.868 9 N -0.736 5.736 10 C 0.557 3.443 11 O -0.554 6.554 12 C -0.284 4.284 13 C 0.040 3.960 14 C -0.200 4.200 15 C -0.043 4.043 16 C -0.200 4.200 17 C 0.167 3.833 18 O -0.163 6.163 19 C -0.393 4.393 20 H 0.098 0.902 21 C 0.042 3.958 22 N -0.852 5.852 23 Si 0.944 3.056 24 H -0.264 1.264 25 H -0.274 1.274 26 H -0.274 1.274 27 C -0.242 4.242 28 C -0.034 4.034 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.401 0.599 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.274 0.726 46 H 0.131 0.869 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.536 16.642 -14.665 29.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.025 3.975 3 C -0.228 4.228 4 O -0.271 6.271 5 C 0.309 3.691 6 O -0.388 6.388 7 C -0.165 4.165 8 C 0.008 3.992 9 N -0.389 5.389 10 C 0.349 3.651 11 O -0.434 6.434 12 C -0.305 4.305 13 C 0.020 3.980 14 C -0.201 4.201 15 C -0.061 4.061 16 C -0.219 4.219 17 C 0.110 3.890 18 O -0.064 6.064 19 C -0.468 4.468 20 H 0.115 0.885 21 C -0.164 4.164 22 N -0.484 5.484 23 Si 0.768 3.232 24 H -0.188 1.188 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.261 4.261 28 C -0.053 4.053 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.235 0.765 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.084 0.916 46 H 0.149 0.851 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -18.972 16.537 -15.265 29.435 hybrid contribution 0.472 -0.403 0.218 0.658 sum -18.499 16.134 -15.046 28.791 Atomic orbital electron populations 1.21899 0.92225 1.03302 1.03301 1.22778 0.95064 0.92765 0.86896 1.22220 1.02262 0.95114 1.03229 1.86558 1.36490 1.62645 1.41429 1.23390 0.79322 0.76520 0.89875 1.90717 1.59147 1.58250 1.30732 1.21521 0.98068 1.01183 0.95725 1.20968 0.92147 0.96958 0.89108 1.45766 1.23019 1.55429 1.14700 1.18408 0.79940 0.78034 0.88713 1.90799 1.59927 1.62164 1.30537 1.22395 1.00734 1.08986 0.98365 1.22298 0.92264 0.87091 0.96331 1.18465 0.98583 1.08971 0.94074 1.20882 0.97853 0.95816 0.91544 1.20152 0.96198 1.05570 0.99954 1.19617 0.91619 0.90691 0.87024 1.83904 1.39073 1.53430 1.29947 1.21532 1.00269 1.24093 1.00953 0.88469 1.25390 0.99619 0.96905 0.94505 1.70020 1.38673 1.37030 1.02727 0.85588 0.79469 0.79027 0.79070 1.18837 1.19906 1.19899 1.21104 1.03293 1.08074 0.93663 1.20994 0.93541 0.93387 0.97344 0.91277 0.90264 0.91595 0.89585 0.91861 0.90574 0.91425 0.86806 0.86800 0.90576 0.90561 0.76482 0.85785 0.85905 0.86383 0.86124 0.91639 0.85108 0.86791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.57 37.16 0.36 -0.26 16 2 C 0.08 0.50 3.18 -26.73 -0.09 0.42 16 3 C -0.17 -0.93 9.55 37.16 0.35 -0.57 16 4 O -0.35 -2.69 9.88 -39.26 -0.39 -3.08 16 5 C 0.47 3.93 7.93 36.00 0.29 4.21 16 6 O -0.50 -5.84 15.20 -18.75 -0.29 -6.13 16 7 C -0.13 -0.73 5.92 -27.89 -0.17 -0.89 16 8 C 0.13 1.23 4.96 -4.05 -0.02 1.21 16 9 N -0.74 -6.99 5.55 -61.76 -0.34 -7.33 16 10 C 0.56 7.65 7.74 -13.04 -0.10 7.54 16 11 O -0.55 -9.83 16.23 5.17 0.08 -9.75 16 12 C -0.28 -3.74 9.41 -37.50 -0.35 -4.09 16 13 C 0.04 0.60 9.45 -37.20 -0.35 0.25 16 14 C -0.20 -3.36 5.87 -105.03 -0.62 -3.98 16 15 C -0.04 -0.71 9.40 -39.14 -0.37 -1.08 16 16 C -0.20 -3.93 9.97 -39.46 -0.39 -4.32 16 17 C 0.17 3.80 6.66 -38.89 -0.26 3.54 16 18 O -0.16 -4.39 9.74 0.73 0.01 -4.38 16 19 C -0.39 -10.39 9.48 30.91 0.29 -10.10 16 20 H 0.10 2.37 5.18 -52.49 -0.27 2.10 16 21 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 22 N -0.85 -23.70 13.67 55.48 0.76 -22.95 16 23 Si 0.94 19.44 29.55 -169.99 -5.02 14.42 16 24 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 25 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 26 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 27 C -0.24 -4.97 9.14 -39.47 -0.36 -5.34 16 28 C -0.03 -0.61 9.78 -39.15 -0.38 -0.99 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.09 0.63 7.16 -51.93 -0.37 0.26 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.33 8.14 -51.94 -0.42 -0.10 16 36 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 39 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 40 H 0.40 2.46 8.45 -40.82 -0.34 2.11 16 41 H 0.12 1.35 6.07 -52.48 -0.32 1.04 16 42 H 0.12 1.85 7.52 -52.48 -0.39 1.46 16 43 H 0.12 1.57 6.16 -52.48 -0.32 1.25 16 44 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 45 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 46 H 0.13 2.67 5.62 -52.49 -0.29 2.37 16 47 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 406.59 15.07 6.13 6.13 Total: -1.00 -33.33 406.59 -7.85 -41.18 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -6.52 Total: 5.34 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -2.26 Total: -13.45 kcal Atomic # 7 Polarization: -30.70 SS G_CDS: 0.42 Total: -30.28 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.58 Total: -23.33 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.33 -7.85 -41.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052970898.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.701 kcal (2) G-P(sol) polarization free energy of solvation -33.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds