Wall clock time and date at job start Wed Apr 1 2020 05:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47096 * 2 1 4 4 O 1.45201 * 109.47022 * 119.99821 * 2 1 3 5 5 C 1.34230 * 117.00054 * 150.00432 * 4 2 1 6 6 O 1.20832 * 119.99835 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00252 * 179.97438 * 5 4 2 8 8 C 1.52994 * 109.47379 * 179.97438 * 7 5 4 9 9 N 1.46497 * 109.47283 * 179.97438 * 8 7 5 10 10 C 1.34780 * 120.00068 * 179.72438 * 9 8 7 11 11 O 1.21718 * 119.99956 * 0.02562 * 10 9 8 12 12 C 1.46256 * 119.99800 * 180.02562 * 10 9 8 13 13 C 1.35022 * 119.99894 * 180.02562 * 12 10 9 14 14 C 1.46957 * 120.00300 * 180.02562 * 13 12 10 15 15 C 1.40029 * 120.09915 * 359.72225 * 14 13 12 16 16 C 1.37601 * 119.89798 * 179.69970 * 15 14 13 17 17 C 1.39180 * 120.09887 * 0.60088 * 16 15 14 18 18 O 1.35565 * 119.89376 * 179.69676 * 17 16 15 19 19 C 1.34792 * 116.99720 * 174.42235 * 18 17 16 20 20 H 1.07998 * 119.99415 * 5.05109 * 19 18 17 21 21 C 1.38711 * 120.00019 * 185.05884 * 19 18 17 22 22 N 1.31509 * 120.00308 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00153 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46612 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47242 * 119.99850 * 23 21 19 26 26 H 1.48501 * 109.46802 * 239.99820 * 23 21 19 27 27 C 1.39171 * 120.20408 * 359.67315 * 17 16 15 28 28 C 1.37600 * 120.10110 * 0.02662 * 27 17 16 29 29 H 1.08993 * 109.47009 * 300.00654 * 1 2 3 30 30 H 1.09003 * 109.47097 * 60.00421 * 1 2 3 31 31 H 1.08998 * 109.46992 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47397 * 240.00134 * 2 1 3 33 33 H 1.09002 * 109.47131 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46804 * 299.99758 * 3 2 1 35 35 H 1.08989 * 109.47286 * 59.99616 * 3 2 1 36 36 H 1.08999 * 109.47049 * 59.99602 * 7 5 4 37 37 H 1.09000 * 109.46912 * 299.99874 * 7 5 4 38 38 H 1.08999 * 109.46934 * 60.00047 * 8 7 5 39 39 H 1.09000 * 109.47417 * 300.00080 * 8 7 5 40 40 H 0.97000 * 119.99919 * 0.02562 * 9 8 7 41 41 H 1.08004 * 120.00191 * 0.02562 * 12 10 9 42 42 H 1.08004 * 119.99914 * 359.97438 * 13 12 10 43 43 H 1.08004 * 120.05337 * 359.97438 * 15 14 13 44 44 H 1.07999 * 119.94808 * 180.27028 * 16 15 14 45 45 H 0.96998 * 120.00252 * 180.02562 * 22 21 19 46 46 H 1.08001 * 119.94985 * 180.02562 * 27 17 16 47 47 H 1.07997 * 120.05103 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 3.1937 -1.3169 1.0852 6 8 3.8015 -1.2996 0.0411 7 6 3.7600 -2.0486 2.2747 8 6 5.1022 -2.6772 1.8952 9 7 5.6530 -3.3880 3.0517 10 6 6.8347 -4.0280 2.9492 11 8 7.4444 -4.0151 1.8958 12 6 7.3843 -4.7381 4.1037 13 6 8.5683 -5.3789 4.0012 14 6 9.1204 -6.0928 5.1610 15 6 8.4230 -6.1050 6.3752 16 6 8.9407 -6.7800 7.4568 17 6 10.1616 -7.4395 7.3488 18 8 10.6707 -8.0980 8.4188 19 6 11.7965 -8.8118 8.2190 20 1 12.2965 -8.7751 7.2624 21 6 12.3127 -9.5936 9.2419 22 7 11.7041 -9.6381 10.4069 23 14 13.8733 -10.5824 8.9653 24 1 14.3601 -10.3614 7.5799 25 1 14.9133 -10.1463 9.9314 26 1 13.5866 -12.0258 9.1646 27 6 10.8610 -7.4252 6.1457 28 6 10.3481 -6.7580 5.0571 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8898 36 1 3.0670 -2.8312 2.5835 37 1 3.9061 -1.3477 3.0966 38 1 5.7954 -1.8948 1.5862 39 1 4.9558 -3.3782 1.0735 40 1 5.1652 -3.4016 3.8900 41 1 6.8430 -4.7499 5.0383 42 1 9.1094 -5.3674 3.0665 43 1 7.4780 -5.5892 6.4614 44 1 8.4014 -6.7936 8.3923 45 1 12.0653 -10.1845 11.1223 46 1 11.8079 -7.9387 6.0664 47 1 10.8914 -6.7479 4.1238 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052970898.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:37 Heat of formation + Delta-G solvation = -143.808813 kcal Electronic energy + Delta-G solvation = -27524.758553 eV Core-core repulsion = 23251.549909 eV Total energy + Delta-G solvation = -4273.208644 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.71031 -40.90106 -40.55443 -38.50916 -38.10935 -36.29127 -34.72756 -34.20880 -33.99258 -32.17316 -31.93620 -29.67046 -28.21808 -27.54305 -26.26065 -24.29803 -23.64867 -22.73270 -22.10028 -21.55335 -20.66196 -19.74364 -18.95811 -18.82705 -18.26302 -17.62611 -17.24786 -16.76248 -16.37881 -16.35920 -16.31663 -15.92074 -15.60466 -15.37603 -15.23755 -14.93581 -14.65801 -14.61369 -14.54922 -14.09091 -14.04627 -13.59873 -13.30986 -13.19851 -13.18467 -13.13795 -13.00877 -12.75617 -12.72740 -12.58116 -12.55052 -12.19088 -12.10410 -11.92477 -11.72187 -11.49182 -11.19969 -11.11287 -11.02709 -10.57993 -10.13581 -9.87311 -8.66437 -8.51684 -6.17722 -0.23233 0.60424 1.11890 1.14411 1.36387 1.45382 1.46870 1.54005 2.15609 2.37444 2.38768 2.87408 3.19287 3.43983 3.47072 3.79621 3.81588 3.86562 3.92288 3.96969 4.00383 4.10482 4.13463 4.31828 4.37556 4.41945 4.49993 4.65805 4.67515 4.74454 4.74892 4.83336 4.86269 4.88421 4.96557 5.04438 5.12617 5.21003 5.21278 5.30307 5.33916 5.39968 5.49686 5.60419 5.65613 5.83058 5.98462 6.12335 6.59879 6.67148 6.93066 7.28830 7.70189 8.70578 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.042439 B = 0.001222 C = 0.001196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.619861 B =22908.101280 C =23397.009425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.070 3.930 3 C -0.168 4.168 4 O -0.353 6.353 5 C 0.466 3.534 6 O -0.543 6.543 7 C -0.114 4.114 8 C 0.134 3.866 9 N -0.711 5.711 10 C 0.549 3.451 11 O -0.597 6.597 12 C -0.241 4.241 13 C 0.013 3.987 14 C -0.171 4.171 15 C -0.036 4.036 16 C -0.206 4.206 17 C 0.129 3.871 18 O -0.220 6.220 19 C -0.417 4.417 20 H 0.105 0.895 21 C -0.017 4.017 22 N -0.913 5.913 23 Si 1.017 2.983 24 H -0.252 1.252 25 H -0.268 1.268 26 H -0.268 1.268 27 C -0.249 4.249 28 C -0.042 4.042 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.043 0.957 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.423 0.577 41 H 0.159 0.841 42 H 0.121 0.879 43 H 0.165 0.835 44 H 0.124 0.876 45 H 0.275 0.725 46 H 0.123 0.877 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.206 18.634 -16.186 33.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.016 3.984 3 C -0.225 4.225 4 O -0.270 6.270 5 C 0.310 3.690 6 O -0.433 6.433 7 C -0.151 4.151 8 C 0.009 3.991 9 N -0.364 5.364 10 C 0.341 3.659 11 O -0.480 6.480 12 C -0.261 4.261 13 C -0.007 4.007 14 C -0.171 4.171 15 C -0.054 4.054 16 C -0.225 4.225 17 C 0.077 3.923 18 O -0.125 6.125 19 C -0.492 4.492 20 H 0.122 0.878 21 C -0.215 4.215 22 N -0.550 5.550 23 Si 0.836 3.164 24 H -0.175 1.175 25 H -0.193 1.193 26 H -0.193 1.193 27 C -0.269 4.269 28 C -0.060 4.060 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.110 0.890 35 H 0.095 0.905 36 H 0.162 0.838 37 H 0.162 0.838 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.261 0.739 41 H 0.177 0.823 42 H 0.139 0.861 43 H 0.182 0.818 44 H 0.142 0.858 45 H 0.084 0.916 46 H 0.141 0.859 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -21.724 18.587 -16.808 33.164 hybrid contribution 0.867 -0.601 0.243 1.083 sum -20.856 17.986 -16.565 32.139 Atomic orbital electron populations 1.21906 0.90264 1.03612 1.04427 1.22990 0.96570 0.92878 0.85955 1.22214 1.00989 0.94847 1.04488 1.86557 1.36018 1.62465 1.41931 1.23917 0.79098 0.75978 0.90013 1.90712 1.60217 1.59834 1.32519 1.21499 0.96262 1.02214 0.95102 1.20882 0.93699 0.95979 0.88503 1.45544 1.21617 1.53450 1.15758 1.18601 0.80831 0.78335 0.88165 1.90805 1.61384 1.63650 1.32177 1.22746 0.99268 1.05053 0.99076 1.22170 0.93684 0.89115 0.95699 1.18782 0.97433 1.06316 0.94601 1.21314 0.99168 0.94784 0.90099 1.20441 0.95301 1.05419 1.01332 1.20209 0.93227 0.91490 0.87381 1.83884 1.40356 1.56318 1.31966 1.21927 1.00861 1.24866 1.01583 0.87803 1.26567 1.03067 0.97873 0.94034 1.70147 1.41309 1.39543 1.04024 0.84549 0.75076 0.77256 0.79501 1.17494 1.19281 1.19303 1.21188 1.03138 1.08564 0.93976 1.21310 0.94309 0.92863 0.97505 0.90627 0.88658 0.91694 0.91188 0.93777 0.88998 0.90526 0.83768 0.83793 0.92562 0.92546 0.73885 0.82330 0.86079 0.81809 0.85776 0.91598 0.85940 0.84036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.57 71.98 0.69 -0.19 16 2 C 0.07 0.80 3.18 30.59 0.10 0.90 16 3 C -0.17 -1.61 9.55 71.98 0.69 -0.92 16 4 O -0.35 -4.65 9.88 -51.42 -0.51 -5.16 16 5 C 0.47 7.02 7.93 71.23 0.56 7.59 16 6 O -0.54 -12.53 15.20 21.95 0.33 -12.20 16 7 C -0.11 -0.88 5.92 29.85 0.18 -0.70 16 8 C 0.13 2.13 4.96 86.38 0.43 2.56 16 9 N -0.71 -10.40 5.55 -467.51 -2.60 -13.00 16 10 C 0.55 12.99 7.74 86.33 0.67 13.66 16 11 O -0.60 -19.97 16.23 -4.41 -0.07 -20.04 16 12 C -0.24 -5.09 9.41 23.61 0.22 -4.87 16 13 C 0.01 0.35 9.45 23.82 0.23 0.57 16 14 C -0.17 -5.18 5.87 -20.13 -0.12 -5.30 16 15 C -0.04 -1.07 9.40 22.55 0.21 -0.86 16 16 C -0.21 -7.98 9.97 22.35 0.22 -7.76 16 17 C 0.13 6.08 6.66 22.72 0.15 6.23 16 18 O -0.22 -12.67 9.74 -20.32 -0.20 -12.87 16 19 C -0.42 -23.39 9.48 67.93 0.64 -22.74 16 20 H 0.10 5.36 5.18 -2.91 -0.02 5.34 16 21 C -0.02 -0.91 5.49 84.85 0.47 -0.45 16 22 N -0.91 -54.10 13.67 21.62 0.30 -53.80 16 23 Si 1.02 41.45 29.55 68.60 2.03 43.47 16 24 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 25 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 26 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 27 C -0.25 -10.43 9.14 22.34 0.20 -10.22 16 28 C -0.04 -1.41 9.78 22.55 0.22 -1.19 16 29 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.07 1.02 7.16 -2.39 -0.02 1.00 16 33 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.14 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.14 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 39 H 0.06 1.16 8.10 -2.39 -0.02 1.15 16 40 H 0.42 2.63 8.45 -92.71 -0.78 1.84 16 41 H 0.16 2.27 6.07 -2.91 -0.02 2.25 16 42 H 0.12 3.30 7.52 -2.91 -0.02 3.28 16 43 H 0.16 3.33 6.16 -2.91 -0.02 3.31 16 44 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 45 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 46 H 0.12 5.22 5.62 -2.91 -0.02 5.20 16 47 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -80.49 406.59 5.27 -75.23 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.22 Total: 22.07 kcal Atomic # 6 Polarization: -29.46 SS G_CDS: 5.76 Total: -23.70 kcal Atomic # 7 Polarization: -64.50 SS G_CDS: -2.30 Total: -66.80 kcal Atomic # 8 Polarization: -49.83 SS G_CDS: -0.44 Total: -50.27 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.47 kcal Total: -80.49 5.27 -75.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052970898.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.583 kcal (2) G-P(sol) polarization free energy of solvation -80.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds