Wall clock time and date at job start Wed Apr 1 2020 04:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47101 * 2 1 4 4 N 1.46500 * 109.47064 * 180.02562 * 3 2 1 5 5 C 1.36748 * 119.99885 * 270.00287 * 4 3 2 6 6 H 1.08001 * 119.99939 * 42.10584 * 5 4 3 7 7 C 1.39088 * 119.99751 * 222.10209 * 5 4 3 8 8 N 1.31343 * 120.00110 * 16.39172 * 7 5 4 9 9 Si 1.86804 * 119.99917 * 196.39281 * 7 5 4 10 10 H 1.48498 * 109.47190 * 90.00367 * 9 7 5 11 11 H 1.48501 * 109.46992 * 209.99918 * 9 7 5 12 12 H 1.48495 * 109.47184 * 329.99963 * 9 7 5 13 13 C 1.34779 * 120.00220 * 89.99827 * 4 3 2 14 14 O 1.21775 * 119.99996 * 175.32308 * 13 4 3 15 15 C 1.41794 * 119.99526 * 355.32314 * 13 4 3 16 16 C 1.35146 * 119.99734 * 184.31927 * 15 13 4 17 17 C 1.46948 * 120.00345 * 185.43438 * 16 15 13 18 18 C 1.40003 * 120.10569 * 354.97271 * 17 16 15 19 19 C 1.38081 * 119.86713 * 180.31786 * 18 17 16 20 20 O 1.36003 * 119.88983 * 179.73206 * 19 18 17 21 21 C 1.42894 * 117.00186 * 0.02698 * 20 19 18 22 22 C 1.39480 * 120.21711 * 359.75919 * 19 18 17 23 23 C 1.39130 * 120.06945 * 359.88786 * 22 19 18 24 24 C 1.38355 * 120.02710 * 0.11258 * 23 22 19 25 25 O 1.36167 * 120.75477 * 180.27334 * 23 22 19 26 26 C 1.43160 * 116.72981 * 342.81221 * 25 23 22 27 27 C 1.53470 * 108.23121 * 46.18119 * 26 25 23 28 28 O 1.36091 * 119.20579 * 179.79148 * 22 19 18 29 29 H 1.09000 * 109.47363 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46958 * 299.99962 * 1 2 3 31 31 H 1.08995 * 109.47168 * 59.99615 * 1 2 3 32 32 H 1.09003 * 109.46958 * 240.00038 * 2 1 3 33 33 H 1.08995 * 109.47168 * 120.00385 * 2 1 3 34 34 H 1.08994 * 109.47067 * 60.00383 * 3 2 1 35 35 H 1.08994 * 109.47160 * 299.99750 * 3 2 1 36 36 H 0.97001 * 119.99850 * 184.89208 * 8 7 5 37 37 H 1.08001 * 120.00224 * 4.32377 * 15 13 4 38 38 H 1.08007 * 120.00114 * 5.44037 * 16 15 13 39 39 H 1.08003 * 120.06584 * 0.02562 * 18 17 16 40 40 H 1.09008 * 109.47134 * 299.99465 * 21 20 19 41 41 H 1.08998 * 109.47211 * 59.99810 * 21 20 19 42 42 H 1.09005 * 109.47040 * 179.97438 * 21 20 19 43 43 H 1.08002 * 119.98336 * 179.97438 * 24 23 22 44 44 H 1.08997 * 109.70964 * 165.86543 * 26 25 23 45 45 H 1.09003 * 109.71012 * 286.49889 * 26 25 23 46 46 H 1.09002 * 109.71259 * 59.88911 * 27 26 25 47 47 H 1.09004 * 109.70652 * 180.51925 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1893 1.4423 1.1834 6 1 3.8586 0.8150 1.9980 7 6 5.3110 2.2498 1.3385 8 7 5.5320 3.2353 0.4987 9 14 6.5034 1.9329 2.7411 10 1 7.5548 0.9850 2.2924 11 1 7.1340 3.2126 3.1534 12 1 5.7693 1.3492 3.8924 13 6 4.1785 1.4426 -1.1681 14 8 5.3932 1.5286 -1.1703 15 6 3.4725 1.3427 -2.3937 16 6 4.1511 1.2548 -3.5591 17 6 3.4239 1.2716 -4.8359 18 6 2.0239 1.2724 -4.8468 19 6 1.3455 1.2815 -6.0494 20 8 -0.0144 1.2768 -6.0605 21 6 -0.6735 1.2628 -4.7928 22 6 2.0505 1.2951 -7.2529 23 6 3.4417 1.3018 -7.2458 24 6 4.1280 1.2926 -6.0445 25 8 4.1439 1.3206 -8.4123 26 6 3.4313 0.9548 -9.5988 27 6 2.0853 1.6923 -9.5970 28 8 1.3611 1.2996 -8.4263 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 6.3494 3.7535 0.5634 37 1 2.3925 1.3368 -2.3959 38 1 5.2280 1.1721 -3.5521 39 1 1.4756 1.2610 -3.9163 40 1 -0.3821 0.3686 -4.2416 41 1 -0.3884 2.1486 -4.2252 42 1 -1.7530 1.2608 -4.9445 43 1 5.2080 1.2974 -6.0398 44 1 4.0076 1.2439 -10.4776 45 1 3.2606 -0.1217 -9.6081 46 1 2.2559 2.7687 -9.5801 47 1 1.5177 1.4233 -10.4879 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060541923.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:48 Heat of formation + Delta-G solvation = -80.396228 kcal Electronic energy + Delta-G solvation = -30823.300024 eV Core-core repulsion = 26552.841156 eV Total energy + Delta-G solvation = -4270.458868 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.35104 -39.39865 -38.64336 -37.41050 -36.80407 -35.03527 -33.40829 -32.45519 -31.17044 -30.52626 -29.90479 -28.25627 -27.30252 -25.93724 -25.31500 -24.45593 -22.63774 -21.95022 -21.11004 -20.38287 -18.93228 -18.47713 -17.68980 -17.36094 -16.96967 -16.27111 -15.93475 -15.71613 -15.31850 -15.12270 -14.96632 -14.83567 -14.41690 -14.39184 -14.22578 -13.69800 -13.58648 -13.47076 -13.15149 -12.82732 -12.59753 -12.39524 -12.14444 -11.81098 -11.77694 -11.53833 -11.41783 -11.28419 -11.21175 -11.05075 -10.96573 -10.80760 -10.76675 -10.62212 -10.54166 -10.23750 -10.12697 -8.99401 -8.82390 -8.21187 -8.03375 -7.50097 -7.09218 -6.07380 -3.85316 0.83152 1.35272 2.42982 2.90038 3.06743 3.22734 3.32624 3.38064 3.40668 3.83415 4.09253 4.30256 4.60232 4.68007 4.74401 4.82087 4.90309 4.93806 4.98950 5.11535 5.13121 5.19099 5.24685 5.30477 5.34214 5.38261 5.40531 5.45194 5.56246 5.72505 5.76156 5.93100 5.96002 6.08971 6.14998 6.25519 6.27529 6.30737 6.39572 6.58491 6.63839 6.75476 6.81507 6.99442 7.07932 7.14571 7.49133 7.58005 8.25135 9.03131 9.19101 9.64011 10.33498 10.95157 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.014140 B = 0.002880 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.761433 B = 9720.885743 C =11384.974228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.106 3.894 4 N -0.442 5.442 5 C -0.336 4.336 6 H 0.081 0.919 7 C 0.062 3.938 8 N -0.809 5.809 9 Si 0.909 3.091 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.477 3.523 14 O -0.531 6.531 15 C -0.144 4.144 16 C -0.093 4.093 17 C 0.008 3.992 18 C -0.204 4.204 19 C 0.140 3.860 20 O -0.307 6.307 21 C 0.024 3.976 22 C 0.005 3.995 23 C 0.088 3.912 24 C -0.140 4.140 25 O -0.303 6.303 26 C 0.020 3.980 27 C 0.020 3.980 28 O -0.297 6.297 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.265 0.735 37 H 0.110 0.890 38 H 0.134 0.866 39 H 0.142 0.858 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.100 0.900 43 H 0.140 0.860 44 H 0.120 0.880 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.485 -3.979 -16.446 20.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.181 4.181 3 C -0.019 4.019 4 N -0.163 5.163 5 C -0.463 4.463 6 H 0.098 0.902 7 C -0.149 4.149 8 N -0.442 5.442 9 Si 0.736 3.264 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.198 1.198 13 C 0.269 3.731 14 O -0.411 6.411 15 C -0.165 4.165 16 C -0.114 4.114 17 C 0.008 3.992 18 C -0.223 4.223 19 C 0.094 3.906 20 O -0.220 6.220 21 C -0.071 4.071 22 C -0.040 4.040 23 C 0.043 3.957 24 C -0.159 4.159 25 O -0.218 6.218 26 C -0.056 4.056 27 C -0.056 4.056 28 O -0.212 6.212 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.127 0.873 38 H 0.152 0.848 39 H 0.159 0.841 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.118 0.882 43 H 0.158 0.842 44 H 0.138 0.862 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.916 -3.715 -16.631 20.237 hybrid contribution 0.481 -0.043 0.632 0.795 sum -10.435 -3.758 -15.999 19.467 Atomic orbital electron populations 1.21718 0.96366 1.01015 1.01404 1.22007 0.94725 0.98869 1.02460 1.21577 0.84225 0.94931 1.01162 1.43301 1.02653 1.64740 1.05563 1.19097 1.11798 1.23482 0.91940 0.90150 1.25249 0.99143 0.93288 0.97253 1.69886 1.24186 1.14936 1.35242 0.86243 0.81276 0.77675 0.81180 1.20373 1.21264 1.19823 1.16635 0.87843 0.85085 0.83559 1.90667 1.13671 1.50155 1.86621 1.22609 0.99588 0.99621 0.94658 1.21990 1.00000 1.00186 0.89264 1.18622 0.91691 0.96067 0.92861 1.21265 0.94629 1.10054 0.96331 1.17922 0.82777 0.99113 0.90763 1.86126 1.15413 1.88792 1.31694 1.23122 0.97675 1.01828 0.84513 1.18024 0.88851 1.12112 0.85023 1.18396 0.88137 1.02318 0.86848 1.20485 1.00591 1.06656 0.88199 1.86353 1.37313 1.84604 1.13483 1.23634 0.94145 1.00295 0.87524 1.23588 0.93762 0.99859 0.88400 1.86355 1.37033 1.84472 1.13329 0.93193 0.92793 0.93211 0.92342 0.91600 0.91260 0.92782 0.92466 0.87270 0.84795 0.84097 0.92364 0.92325 0.88207 0.84215 0.86201 0.90471 0.90707 0.86305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 37.16 0.37 -1.38 16 2 C -0.14 -2.23 6.25 -26.73 -0.17 -2.39 16 3 C 0.11 1.99 4.98 -4.04 -0.02 1.97 16 4 N -0.44 -10.91 2.51 -118.01 -0.30 -11.21 16 5 C -0.34 -9.10 9.27 -15.04 -0.14 -9.24 16 6 H 0.08 2.08 7.89 -52.49 -0.41 1.67 16 7 C 0.06 1.75 4.46 -17.44 -0.08 1.67 16 8 N -0.81 -24.07 11.20 55.50 0.62 -23.45 16 9 Si 0.91 21.65 29.59 -169.99 -5.03 16.62 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 C 0.48 12.18 6.82 -14.90 -0.10 12.08 16 14 O -0.53 -15.81 13.32 5.12 0.07 -15.74 16 15 C -0.14 -2.90 8.28 -39.32 -0.33 -3.22 16 16 C -0.09 -1.75 9.40 -37.16 -0.35 -2.10 16 17 C 0.01 0.13 5.86 -105.09 -0.62 -0.48 16 18 C -0.20 -3.02 8.39 -38.98 -0.33 -3.35 16 19 C 0.14 2.08 6.69 -39.18 -0.26 1.82 16 20 O -0.31 -4.21 10.24 -35.18 -0.36 -4.57 16 21 C 0.02 0.23 9.81 101.05 0.99 1.22 16 22 C 0.01 0.08 6.52 -38.79 -0.25 -0.18 16 23 C 0.09 1.29 6.48 -39.21 -0.25 1.03 16 24 C -0.14 -2.14 9.70 -38.92 -0.38 -2.52 16 25 O -0.30 -3.89 10.41 -33.06 -0.34 -4.24 16 26 C 0.02 0.17 7.26 37.40 0.27 0.44 16 27 C 0.02 0.17 7.26 37.40 0.27 0.45 16 28 O -0.30 -3.99 10.16 -44.91 -0.46 -4.45 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.93 7.98 -51.93 -0.41 0.52 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.07 1.30 8.04 -51.93 -0.42 0.88 16 35 H 0.05 0.92 6.23 -51.93 -0.32 0.60 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.11 1.86 4.19 -52.49 -0.22 1.64 16 38 H 0.13 2.68 7.48 -52.48 -0.39 2.29 16 39 H 0.14 1.88 4.39 -52.48 -0.23 1.65 16 40 H 0.06 0.52 7.65 -51.92 -0.40 0.12 16 41 H 0.06 0.54 7.65 -51.93 -0.40 0.14 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 44 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.12 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 387.27 15.07 5.84 5.84 Total: -1.00 -35.45 387.27 -7.90 -43.35 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -6.57 Total: 2.03 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -1.37 Total: -4.19 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.33 Total: -34.66 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -1.09 Total: -28.99 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.45 -7.90 -43.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060541923.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.045 kcal (2) G-P(sol) polarization free energy of solvation -35.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds