Wall clock time and date at job start Wed Apr 1 2020 04:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47101 * 2 1 4 4 N 1.46500 * 109.47064 * 180.02562 * 3 2 1 5 5 C 1.36748 * 119.99885 * 270.00287 * 4 3 2 6 6 H 1.08001 * 119.99939 * 42.10584 * 5 4 3 7 7 C 1.39088 * 119.99751 * 222.10209 * 5 4 3 8 8 N 1.31343 * 120.00110 * 16.39172 * 7 5 4 9 9 Si 1.86804 * 119.99917 * 196.39281 * 7 5 4 10 10 H 1.48498 * 109.47190 * 90.00367 * 9 7 5 11 11 H 1.48501 * 109.46992 * 209.99918 * 9 7 5 12 12 H 1.48495 * 109.47184 * 329.99963 * 9 7 5 13 13 C 1.34779 * 120.00220 * 89.99827 * 4 3 2 14 14 O 1.21775 * 119.99996 * 175.32308 * 13 4 3 15 15 C 1.41794 * 119.99526 * 355.32314 * 13 4 3 16 16 C 1.35146 * 119.99734 * 184.31927 * 15 13 4 17 17 C 1.46948 * 120.00345 * 185.43438 * 16 15 13 18 18 C 1.40003 * 120.10569 * 354.97271 * 17 16 15 19 19 C 1.38081 * 119.86713 * 180.31786 * 18 17 16 20 20 O 1.36003 * 119.88983 * 179.73206 * 19 18 17 21 21 C 1.42894 * 117.00186 * 0.02698 * 20 19 18 22 22 C 1.39480 * 120.21711 * 359.75919 * 19 18 17 23 23 C 1.39130 * 120.06945 * 359.88786 * 22 19 18 24 24 C 1.38355 * 120.02710 * 0.11258 * 23 22 19 25 25 O 1.36167 * 120.75477 * 180.27334 * 23 22 19 26 26 C 1.43160 * 116.72981 * 342.81221 * 25 23 22 27 27 C 1.53470 * 108.23121 * 46.18119 * 26 25 23 28 28 O 1.36091 * 119.20579 * 179.79148 * 22 19 18 29 29 H 1.09000 * 109.47363 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46958 * 299.99962 * 1 2 3 31 31 H 1.08995 * 109.47168 * 59.99615 * 1 2 3 32 32 H 1.09003 * 109.46958 * 240.00038 * 2 1 3 33 33 H 1.08995 * 109.47168 * 120.00385 * 2 1 3 34 34 H 1.08994 * 109.47067 * 60.00383 * 3 2 1 35 35 H 1.08994 * 109.47160 * 299.99750 * 3 2 1 36 36 H 0.97001 * 119.99850 * 184.89208 * 8 7 5 37 37 H 1.08001 * 120.00224 * 4.32377 * 15 13 4 38 38 H 1.08007 * 120.00114 * 5.44037 * 16 15 13 39 39 H 1.08003 * 120.06584 * 0.02562 * 18 17 16 40 40 H 1.09008 * 109.47134 * 299.99465 * 21 20 19 41 41 H 1.08998 * 109.47211 * 59.99810 * 21 20 19 42 42 H 1.09005 * 109.47040 * 179.97438 * 21 20 19 43 43 H 1.08002 * 119.98336 * 179.97438 * 24 23 22 44 44 H 1.08997 * 109.70964 * 165.86543 * 26 25 23 45 45 H 1.09003 * 109.71012 * 286.49889 * 26 25 23 46 46 H 1.09002 * 109.71259 * 59.88911 * 27 26 25 47 47 H 1.09004 * 109.70652 * 180.51925 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1893 1.4423 1.1834 6 1 3.8586 0.8150 1.9980 7 6 5.3110 2.2498 1.3385 8 7 5.5320 3.2353 0.4987 9 14 6.5034 1.9329 2.7411 10 1 7.5548 0.9850 2.2924 11 1 7.1340 3.2126 3.1534 12 1 5.7693 1.3492 3.8924 13 6 4.1785 1.4426 -1.1681 14 8 5.3932 1.5286 -1.1703 15 6 3.4725 1.3427 -2.3937 16 6 4.1511 1.2548 -3.5591 17 6 3.4239 1.2716 -4.8359 18 6 2.0239 1.2724 -4.8468 19 6 1.3455 1.2815 -6.0494 20 8 -0.0144 1.2768 -6.0605 21 6 -0.6735 1.2628 -4.7928 22 6 2.0505 1.2951 -7.2529 23 6 3.4417 1.3018 -7.2458 24 6 4.1280 1.2926 -6.0445 25 8 4.1439 1.3206 -8.4123 26 6 3.4313 0.9548 -9.5988 27 6 2.0853 1.6923 -9.5970 28 8 1.3611 1.2996 -8.4263 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 6.3494 3.7535 0.5634 37 1 2.3925 1.3368 -2.3959 38 1 5.2280 1.1721 -3.5521 39 1 1.4756 1.2610 -3.9163 40 1 -0.3821 0.3686 -4.2416 41 1 -0.3884 2.1486 -4.2252 42 1 -1.7530 1.2608 -4.9445 43 1 5.2080 1.2974 -6.0398 44 1 4.0076 1.2439 -10.4776 45 1 3.2606 -0.1217 -9.6081 46 1 2.2559 2.7687 -9.5801 47 1 1.5177 1.4233 -10.4879 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060541923.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:47 Heat of formation + Delta-G solvation = -102.526309 kcal Electronic energy + Delta-G solvation = -30824.259656 eV Core-core repulsion = 26552.841156 eV Total energy + Delta-G solvation = -4271.418500 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.35226 -40.59558 -40.24129 -38.49209 -37.85887 -36.72789 -34.98443 -34.00932 -32.83262 -31.55104 -31.04470 -29.35555 -28.29871 -27.51709 -26.59220 -25.74776 -24.02405 -23.08195 -22.37193 -21.66210 -20.28181 -19.72503 -18.82932 -18.59533 -18.32875 -17.74869 -17.18143 -16.84276 -16.79300 -16.29593 -16.00368 -15.94545 -15.75987 -15.50286 -15.32444 -15.28103 -15.18838 -14.83608 -14.16133 -14.07994 -13.90535 -13.61566 -13.42295 -13.33977 -12.96894 -12.83344 -12.76587 -12.63703 -12.58305 -12.38556 -12.26858 -12.21921 -12.09295 -11.93579 -11.84682 -11.52368 -11.48834 -10.82928 -10.36394 -10.03396 -9.30820 -9.08901 -8.74627 -8.13177 -5.96257 -0.47562 0.22365 1.03604 1.39646 1.46491 1.51781 1.96119 2.14218 2.33150 2.37807 2.60333 3.00901 3.25917 3.34392 3.35053 3.65314 3.74426 3.86288 3.99993 4.05987 4.11855 4.17085 4.20681 4.29737 4.33336 4.43829 4.44466 4.51001 4.58789 4.62489 4.69171 4.77596 4.80885 4.85352 4.86831 4.91347 5.05621 5.14029 5.27163 5.33884 5.36616 5.46717 5.54603 5.57933 5.62388 5.80142 6.12813 6.21600 6.47808 7.02943 7.25556 7.69094 8.40296 8.88987 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.014140 B = 0.002880 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.761433 B = 9720.885743 C =11384.974228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.132 4.132 3 C 0.102 3.898 4 N -0.459 5.459 5 C -0.355 4.355 6 H 0.085 0.915 7 C 0.011 3.989 8 N -0.854 5.854 9 Si 0.969 3.031 10 H -0.290 1.290 11 H -0.284 1.284 12 H -0.251 1.251 13 C 0.471 3.529 14 O -0.589 6.589 15 C -0.169 4.169 16 C -0.059 4.059 17 C -0.014 4.014 18 C -0.194 4.194 19 C 0.132 3.868 20 O -0.319 6.319 21 C 0.012 3.988 22 C 0.008 3.992 23 C 0.084 3.916 24 C -0.143 4.143 25 O -0.316 6.316 26 C 0.013 3.987 27 C 0.012 3.988 28 O -0.312 6.312 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.257 0.743 37 H 0.144 0.856 38 H 0.113 0.887 39 H 0.157 0.843 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.126 0.874 43 H 0.142 0.858 44 H 0.158 0.842 45 H 0.083 0.917 46 H 0.078 0.922 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.135 -4.767 -18.541 23.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.171 4.171 3 C -0.021 4.021 4 N -0.179 5.179 5 C -0.483 4.483 6 H 0.103 0.897 7 C -0.196 4.196 8 N -0.489 5.489 9 Si 0.794 3.206 10 H -0.217 1.217 11 H -0.209 1.209 12 H -0.175 1.175 13 C 0.263 3.737 14 O -0.473 6.473 15 C -0.190 4.190 16 C -0.080 4.080 17 C -0.015 4.015 18 C -0.212 4.212 19 C 0.086 3.914 20 O -0.232 6.232 21 C -0.082 4.082 22 C -0.037 4.037 23 C 0.039 3.961 24 C -0.162 4.162 25 O -0.231 6.231 26 C -0.062 4.062 27 C -0.062 4.062 28 O -0.227 6.227 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.161 0.839 38 H 0.131 0.869 39 H 0.174 0.826 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.144 0.856 43 H 0.160 0.840 44 H 0.175 0.825 45 H 0.101 0.899 46 H 0.096 0.904 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -13.633 -4.517 -18.721 23.595 hybrid contribution 1.182 0.139 0.897 1.490 sum -12.450 -4.378 -17.824 22.179 Atomic orbital electron populations 1.21672 0.92847 1.02526 1.02683 1.21882 0.97614 0.96105 1.01473 1.21808 0.80918 0.97407 1.01961 1.43536 1.05022 1.64565 1.04742 1.19381 1.12659 1.23348 0.92946 0.89738 1.26109 1.00910 0.93115 0.99460 1.70007 1.24387 1.16567 1.37954 0.85315 0.78895 0.77258 0.79102 1.21728 1.20928 1.17474 1.17418 0.87589 0.83365 0.85281 1.90619 1.16219 1.52670 1.87745 1.22359 1.00955 1.03095 0.92560 1.22028 0.99217 0.96350 0.90412 1.18422 0.92398 0.98968 0.91713 1.21351 0.93856 1.08800 0.97225 1.18031 0.83601 0.99091 0.90714 1.86123 1.14565 1.88569 1.33961 1.23461 0.98881 1.02521 0.83326 1.18251 0.88995 1.10550 0.85941 1.18366 0.88224 1.02140 0.87390 1.20585 1.00909 1.06179 0.88544 1.86336 1.38221 1.84546 1.14007 1.24041 0.94434 1.00773 0.86907 1.23993 0.94210 1.00175 0.87843 1.86334 1.38115 1.84349 1.13905 0.91569 0.92367 0.91140 0.92581 0.93425 0.91590 0.90765 0.93337 0.83875 0.86874 0.82591 0.91411 0.91804 0.85605 0.83977 0.82491 0.89876 0.90383 0.82572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.91 71.98 0.71 -2.17 16 2 C -0.13 -3.98 6.25 30.60 0.19 -3.79 16 3 C 0.10 3.80 4.98 86.38 0.43 4.23 16 4 N -0.46 -23.23 2.51 -645.44 -1.62 -24.85 16 5 C -0.36 -19.86 9.27 84.13 0.78 -19.08 16 6 H 0.08 4.48 7.89 -2.91 -0.02 4.46 16 7 C 0.01 0.64 4.46 84.97 0.38 1.02 16 8 N -0.85 -53.29 11.20 21.69 0.24 -53.04 16 9 Si 0.97 46.06 29.59 68.60 2.03 48.09 16 10 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.25 -10.86 7.11 99.48 0.71 -10.15 16 13 C 0.47 24.87 6.82 85.12 0.58 25.45 16 14 O -0.59 -36.92 13.32 -4.59 -0.06 -36.98 16 15 C -0.17 -6.89 8.28 22.44 0.19 -6.70 16 16 C -0.06 -2.25 9.40 23.84 0.22 -2.02 16 17 C -0.01 -0.46 5.86 -20.17 -0.12 -0.58 16 18 C -0.19 -5.40 8.39 22.66 0.19 -5.21 16 19 C 0.13 3.65 6.69 22.53 0.15 3.80 16 20 O -0.32 -7.90 10.24 -78.83 -0.81 -8.71 16 21 C 0.01 0.20 9.81 113.37 1.11 1.31 16 22 C 0.01 0.23 6.52 22.78 0.15 0.38 16 23 C 0.08 2.35 6.48 22.51 0.15 2.50 16 24 C -0.14 -4.31 9.70 22.70 0.22 -4.09 16 25 O -0.32 -7.52 10.41 -83.23 -0.87 -8.39 16 26 C 0.01 0.18 7.26 72.14 0.52 0.70 16 27 C 0.01 0.18 7.26 72.14 0.52 0.70 16 28 O -0.31 -7.59 10.16 -70.79 -0.72 -8.31 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.06 1.71 7.98 -2.39 -0.02 1.69 16 33 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.07 2.47 8.04 -2.39 -0.02 2.45 16 35 H 0.07 2.42 6.23 -2.39 -0.01 2.41 16 36 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 37 H 0.14 4.67 4.19 -2.91 -0.01 4.66 16 38 H 0.11 4.78 7.48 -2.91 -0.02 4.76 16 39 H 0.16 3.74 4.39 -2.91 -0.01 3.72 16 40 H 0.07 0.97 7.65 -2.38 -0.02 0.95 16 41 H 0.06 0.97 7.65 -2.39 -0.02 0.95 16 42 H 0.13 1.34 8.14 -2.38 -0.02 1.32 16 43 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 44 H 0.16 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.16 1.02 8.14 -2.38 -0.02 1.00 16 Total: -1.00 -82.05 387.27 5.57 -76.48 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.99 Total: 19.24 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: 6.38 Total: -3.53 kcal Atomic # 7 Polarization: -76.52 SS G_CDS: -1.38 Total: -77.90 kcal Atomic # 8 Polarization: -59.94 SS G_CDS: -2.45 Total: -62.39 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -82.05 5.57 -76.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060541923.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.050 kcal (2) G-P(sol) polarization free energy of solvation -82.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds