Wall clock time and date at job start Wed Apr 1 2020 05:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.99361 * 2 1 4 4 O 1.43740 * 109.87768 * 238.91609 * 2 1 3 5 5 C 1.44388 * 106.97609 * 214.06477 * 4 2 1 6 6 C 1.54989 * 103.48892 * 40.05766 * 5 4 2 7 7 C 1.54103 * 109.87964 * 121.08571 * 2 1 3 8 8 H 1.09003 * 110.60235 * 240.18866 * 7 2 1 9 9 C 1.50703 * 110.48533 * 2.77762 * 7 2 1 10 10 O 1.21290 * 120.00376 * 92.66018 * 9 7 2 11 11 N 1.34778 * 119.99809 * 272.65509 * 9 7 2 12 12 C 1.46502 * 120.00297 * 4.11076 * 11 9 7 13 13 C 1.50696 * 109.47237 * 270.00253 * 12 11 9 14 14 H 1.08003 * 120.00001 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99801 * 179.97438 * 13 12 11 16 16 N 1.31508 * 120.00332 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99838 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47713 * 59.99872 * 17 15 13 19 19 H 1.48503 * 109.47400 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47020 * 299.99733 * 17 15 13 21 21 C 1.40104 * 119.99991 * 184.11713 * 11 9 7 22 22 C 1.38848 * 120.01679 * 6.48975 * 21 11 9 23 23 C 1.38122 * 120.03461 * 180.02562 * 22 21 11 24 24 C 1.38717 * 120.16275 * 359.96846 * 23 22 21 25 25 C 1.38987 * 119.93400 * 359.94409 * 24 23 22 26 26 C 1.38654 * 119.88331 * 0.11742 * 25 24 23 27 27 O 1.36109 * 120.78335 * 180.20395 * 25 24 23 28 28 C 1.43178 * 116.71222 * 342.72006 * 27 25 24 29 29 C 1.53462 * 108.23253 * 46.27565 * 28 27 25 30 30 O 1.36208 * 119.31252 * 179.81222 * 24 23 22 31 31 H 1.08998 * 109.46757 * 293.26422 * 1 2 3 32 32 H 1.08994 * 109.46864 * 53.26589 * 1 2 3 33 33 H 1.09005 * 109.47323 * 173.26563 * 1 2 3 34 34 H 1.09006 * 110.61537 * 281.55928 * 5 4 2 35 35 H 1.08994 * 110.61819 * 158.56284 * 5 4 2 36 36 H 1.09003 * 110.90646 * 204.77845 * 6 5 4 37 37 H 1.09007 * 110.93580 * 81.19292 * 6 5 4 38 38 H 1.08999 * 109.46785 * 30.00163 * 12 11 9 39 39 H 1.08998 * 109.46913 * 150.00046 * 12 11 9 40 40 H 0.96996 * 120.00340 * 180.02562 * 16 15 13 41 41 H 1.07998 * 119.97970 * 0.31870 * 22 21 11 42 42 H 1.08006 * 119.91716 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.98551 * 179.97438 * 26 25 24 44 44 H 1.08998 * 109.71100 * 286.58929 * 28 27 25 45 45 H 1.09005 * 109.71274 * 165.96150 * 28 27 25 46 46 H 1.08998 * 109.71318 * 180.54382 * 29 28 27 47 47 H 1.09000 * 109.74457 * 59.93461 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 8 2.0187 -0.6979 -1.1577 5 6 3.2379 -1.3642 -0.7647 6 6 2.9195 -1.8915 0.6575 7 6 2.0540 -0.7482 1.2411 8 1 2.6615 -0.0873 1.8594 9 6 0.9073 -1.3105 2.0411 10 8 0.5252 -2.4438 1.8395 11 7 0.3065 -0.5540 2.9809 12 6 0.7074 0.8433 3.1630 13 6 1.8214 0.9185 4.1750 14 1 2.1934 0.0157 4.6368 15 6 2.3659 2.1397 4.5115 16 7 1.9133 3.2389 3.9489 17 14 3.7473 2.2328 5.7654 18 1 4.9085 1.4432 5.2823 19 1 4.1545 3.6490 5.9492 20 1 3.2776 1.6801 7.0613 21 6 -0.7015 -1.1038 3.7837 22 6 -0.9891 -2.4600 3.7060 23 6 -1.9831 -3.0023 4.4970 24 6 -2.6963 -2.1953 5.3712 25 6 -2.4095 -0.8378 5.4525 26 6 -1.4125 -0.2935 4.6574 27 8 -3.0957 -0.0308 6.3072 28 6 -4.3362 -0.5360 6.8132 29 6 -4.1145 -1.9844 7.2693 30 8 -3.6755 -2.7476 6.1403 31 1 -0.3633 0.4059 0.9441 32 1 -0.3633 0.6146 -0.8236 33 1 -0.3634 -1.0206 -0.1205 34 1 4.0685 -0.6589 -0.7356 35 1 3.4584 -2.1908 -1.4401 36 1 3.8332 -2.0225 1.2374 37 1 2.3541 -2.8222 0.6104 38 1 1.0524 1.2492 2.2120 39 1 -0.1452 1.4226 3.5174 40 1 2.2966 4.0980 4.1854 41 1 -0.4320 -3.0919 3.0302 42 1 -2.2054 -4.0574 4.4347 43 1 -1.1885 0.7612 4.7189 44 1 -5.0916 -0.5094 6.0279 45 1 -4.6624 0.0698 7.6586 46 1 -5.0485 -2.3967 7.6509 47 1 -3.3542 -2.0124 8.0499 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092410356.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:12 Heat of formation + Delta-G solvation = -104.464543 kcal Electronic energy + Delta-G solvation = -32139.395426 eV Core-core repulsion = 27867.892878 eV Total energy + Delta-G solvation = -4271.502548 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.08451 -40.53656 -38.69580 -36.95376 -36.88957 -35.19576 -32.74415 -32.29185 -31.20285 -30.69488 -29.82646 -28.23573 -27.11902 -26.02186 -24.59081 -23.50514 -22.68183 -21.94624 -21.47531 -20.51902 -18.74770 -18.14792 -17.55451 -17.00776 -16.75621 -16.37253 -16.11878 -15.63405 -15.42644 -15.02760 -14.85652 -14.72182 -14.53749 -14.38559 -14.14252 -13.55756 -13.52710 -13.35113 -12.98221 -12.74094 -12.47038 -12.19568 -12.07532 -11.99371 -11.86120 -11.64238 -11.45371 -11.29772 -11.02205 -10.94742 -10.92698 -10.84002 -10.65625 -10.50061 -10.29270 -10.18546 -9.96035 -9.52516 -8.98658 -8.81533 -8.66164 -8.04598 -7.04357 -6.30819 -4.40330 1.66497 1.78578 3.02364 3.17784 3.23179 3.23936 3.26458 3.35549 3.69829 4.06597 4.20869 4.29044 4.36015 4.71341 4.84943 4.91300 4.93219 4.98928 5.03024 5.09916 5.27427 5.29086 5.43012 5.47360 5.57362 5.64763 5.66510 5.76748 5.79261 5.86528 5.96656 6.04866 6.12902 6.17416 6.26895 6.28936 6.39237 6.46627 6.55623 6.62980 6.76743 6.95896 7.02596 7.12660 7.18966 7.52186 7.61796 7.80026 7.84494 8.01082 8.59039 8.71445 9.28042 10.75071 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.008934 B = 0.004518 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3133.239434 B = 6196.208828 C = 8351.998972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.093 3.907 3 H 0.082 0.918 4 O -0.375 6.375 5 C 0.049 3.951 6 C -0.143 4.143 7 C -0.142 4.142 8 H 0.128 0.872 9 C 0.539 3.461 10 O -0.539 6.539 11 N -0.532 5.532 12 C 0.224 3.776 13 C -0.544 4.544 14 H 0.063 0.937 15 C 0.070 3.930 16 N -0.886 5.886 17 Si 0.898 3.102 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.181 3.819 22 C -0.169 4.169 23 C -0.096 4.096 24 C 0.007 3.993 25 C 0.069 3.931 26 C -0.143 4.143 27 O -0.306 6.306 28 C 0.022 3.978 29 C 0.022 3.978 30 O -0.313 6.313 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.268 0.732 41 H 0.185 0.815 42 H 0.129 0.871 43 H 0.148 0.852 44 H 0.073 0.927 45 H 0.116 0.884 46 H 0.114 0.886 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.858 -6.846 -0.424 9.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.035 3.965 3 H 0.100 0.900 4 O -0.294 6.294 5 C -0.027 4.027 6 C -0.181 4.181 7 C -0.163 4.163 8 H 0.146 0.854 9 C 0.330 3.670 10 O -0.419 6.419 11 N -0.251 5.251 12 C 0.105 3.895 13 C -0.582 4.582 14 H 0.081 0.919 15 C -0.134 4.134 16 N -0.524 5.524 17 Si 0.725 3.275 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.200 1.200 21 C 0.084 3.916 22 C -0.189 4.189 23 C -0.115 4.115 24 C -0.037 4.037 25 C 0.024 3.976 26 C -0.164 4.164 27 O -0.220 6.220 28 C -0.054 4.054 29 C -0.054 4.054 30 O -0.228 6.228 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.201 0.799 42 H 0.147 0.853 43 H 0.166 0.834 44 H 0.091 0.909 45 H 0.134 0.866 46 H 0.132 0.868 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.105 -7.133 -0.753 9.419 hybrid contribution 0.699 0.519 1.441 1.683 sum -5.406 -6.614 0.688 8.570 Atomic orbital electron populations 1.22195 0.93781 1.03237 1.03180 1.22555 0.95258 0.95548 0.83092 0.90042 1.88853 1.39664 1.67798 1.33071 1.23511 0.87798 0.96190 0.95240 1.23151 0.99970 0.99170 0.95809 1.22847 0.96466 0.99351 0.97658 0.85388 1.20213 0.82889 0.84767 0.79145 1.90270 1.64594 1.19494 1.67589 1.46026 1.32724 1.15131 1.31227 1.19797 0.96922 0.74017 0.98728 1.21324 1.18693 0.93595 1.24604 0.91891 1.24899 0.97050 0.95278 0.96164 1.69891 1.41878 0.98296 1.42310 0.86546 0.81964 0.77211 0.81794 1.19971 1.20994 1.19978 1.17593 0.89721 0.91890 0.92355 1.22433 0.99382 0.94618 1.02423 1.20339 0.95531 0.99116 0.96537 1.18851 0.95467 0.90749 0.98678 1.18465 0.96420 0.87850 0.94850 1.20186 0.97295 1.01537 0.97344 1.86325 1.33637 1.42447 1.59630 1.23545 0.85699 0.95689 1.00457 1.23509 1.01674 0.92138 0.88100 1.86270 1.52544 1.45173 1.38847 0.90301 0.91791 0.91450 0.92123 0.89100 0.89994 0.88734 0.93171 0.93355 0.92179 0.79899 0.85308 0.83417 0.90880 0.86597 0.86769 0.90933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 8.34 37.16 0.31 -2.47 16 2 C 0.09 1.56 3.31 -26.16 -0.09 1.47 16 3 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 4 O -0.37 -6.10 11.19 -35.23 -0.39 -6.49 16 5 C 0.05 0.65 7.72 38.21 0.29 0.95 16 6 C -0.14 -2.11 6.64 -24.73 -0.16 -2.27 16 7 C -0.14 -2.47 2.46 -90.24 -0.22 -2.69 16 8 H 0.13 2.39 6.61 -51.93 -0.34 2.05 16 9 C 0.54 10.48 4.67 -10.98 -0.05 10.43 16 10 O -0.54 -10.84 11.79 5.55 0.07 -10.78 16 11 N -0.53 -10.93 2.08 -114.72 -0.24 -11.17 16 12 C 0.22 5.00 3.52 -5.19 -0.02 4.98 16 13 C -0.54 -13.42 8.70 -34.44 -0.30 -13.72 16 14 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 15 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.89 -23.16 13.29 55.43 0.74 -22.42 16 17 Si 0.90 19.92 29.54 -169.99 -5.02 14.90 16 18 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 C 0.18 3.68 6.50 -83.66 -0.54 3.14 16 22 C -0.17 -3.21 9.00 -39.40 -0.35 -3.57 16 23 C -0.10 -1.66 9.95 -39.45 -0.39 -2.05 16 24 C 0.01 0.13 6.50 -39.13 -0.25 -0.12 16 25 C 0.07 1.29 6.49 -39.15 -0.25 1.03 16 26 C -0.14 -2.88 9.18 -39.24 -0.36 -3.24 16 27 O -0.31 -5.17 10.42 -32.87 -0.34 -5.51 16 28 C 0.02 0.26 7.26 37.40 0.27 0.53 16 29 C 0.02 0.24 7.26 37.40 0.27 0.52 16 30 O -0.31 -4.80 10.42 -33.19 -0.35 -5.15 16 31 H 0.08 1.40 5.21 -51.93 -0.27 1.13 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.18 7.54 -51.93 -0.39 0.79 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.09 1.48 6.82 -51.92 -0.35 1.13 16 38 H 0.05 1.12 5.50 -51.93 -0.29 0.83 16 39 H 0.05 1.15 5.98 -51.93 -0.31 0.84 16 40 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 41 H 0.18 3.57 4.64 -55.67 -0.26 3.32 16 42 H 0.13 1.93 8.06 -52.48 -0.42 1.50 16 43 H 0.15 3.16 6.02 -52.49 -0.32 2.84 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 368.75 15.07 5.56 5.56 Total: -1.00 -28.74 368.75 -8.24 -36.97 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -6.30 Total: 9.51 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -1.95 Total: -5.42 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: 0.50 Total: -33.59 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -1.02 Total: -27.92 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.74 -8.24 -36.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092410356.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.491 kcal (2) G-P(sol) polarization free energy of solvation -28.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds