Wall clock time and date at job start Wed Apr 1 2020 05:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.99361 * 2 1 4 4 O 1.43740 * 109.87768 * 238.91609 * 2 1 3 5 5 C 1.44388 * 106.97609 * 214.06477 * 4 2 1 6 6 C 1.54989 * 103.48892 * 40.05766 * 5 4 2 7 7 C 1.54103 * 109.87964 * 121.08571 * 2 1 3 8 8 H 1.09003 * 110.60235 * 240.18866 * 7 2 1 9 9 C 1.50703 * 110.48533 * 2.77762 * 7 2 1 10 10 O 1.21290 * 120.00376 * 92.66018 * 9 7 2 11 11 N 1.34778 * 119.99809 * 272.65509 * 9 7 2 12 12 C 1.46502 * 120.00297 * 4.11076 * 11 9 7 13 13 C 1.50696 * 109.47237 * 270.00253 * 12 11 9 14 14 H 1.08003 * 120.00001 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99801 * 179.97438 * 13 12 11 16 16 N 1.31508 * 120.00332 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99838 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47713 * 59.99872 * 17 15 13 19 19 H 1.48503 * 109.47400 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47020 * 299.99733 * 17 15 13 21 21 C 1.40104 * 119.99991 * 184.11713 * 11 9 7 22 22 C 1.38848 * 120.01679 * 6.48975 * 21 11 9 23 23 C 1.38122 * 120.03461 * 180.02562 * 22 21 11 24 24 C 1.38717 * 120.16275 * 359.96846 * 23 22 21 25 25 C 1.38987 * 119.93400 * 359.94409 * 24 23 22 26 26 C 1.38654 * 119.88331 * 0.11742 * 25 24 23 27 27 O 1.36109 * 120.78335 * 180.20395 * 25 24 23 28 28 C 1.43178 * 116.71222 * 342.72006 * 27 25 24 29 29 C 1.53462 * 108.23253 * 46.27565 * 28 27 25 30 30 O 1.36208 * 119.31252 * 179.81222 * 24 23 22 31 31 H 1.08998 * 109.46757 * 293.26422 * 1 2 3 32 32 H 1.08994 * 109.46864 * 53.26589 * 1 2 3 33 33 H 1.09005 * 109.47323 * 173.26563 * 1 2 3 34 34 H 1.09006 * 110.61537 * 281.55928 * 5 4 2 35 35 H 1.08994 * 110.61819 * 158.56284 * 5 4 2 36 36 H 1.09003 * 110.90646 * 204.77845 * 6 5 4 37 37 H 1.09007 * 110.93580 * 81.19292 * 6 5 4 38 38 H 1.08999 * 109.46785 * 30.00163 * 12 11 9 39 39 H 1.08998 * 109.46913 * 150.00046 * 12 11 9 40 40 H 0.96996 * 120.00340 * 180.02562 * 16 15 13 41 41 H 1.07998 * 119.97970 * 0.31870 * 22 21 11 42 42 H 1.08006 * 119.91716 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.98551 * 179.97438 * 26 25 24 44 44 H 1.08998 * 109.71100 * 286.58929 * 28 27 25 45 45 H 1.09005 * 109.71274 * 165.96150 * 28 27 25 46 46 H 1.08998 * 109.71318 * 180.54382 * 29 28 27 47 47 H 1.09000 * 109.74457 * 59.93461 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 8 2.0187 -0.6979 -1.1577 5 6 3.2379 -1.3642 -0.7647 6 6 2.9195 -1.8915 0.6575 7 6 2.0540 -0.7482 1.2411 8 1 2.6615 -0.0873 1.8594 9 6 0.9073 -1.3105 2.0411 10 8 0.5252 -2.4438 1.8395 11 7 0.3065 -0.5540 2.9809 12 6 0.7074 0.8433 3.1630 13 6 1.8214 0.9185 4.1750 14 1 2.1934 0.0157 4.6368 15 6 2.3659 2.1397 4.5115 16 7 1.9133 3.2389 3.9489 17 14 3.7473 2.2328 5.7654 18 1 4.9085 1.4432 5.2823 19 1 4.1545 3.6490 5.9492 20 1 3.2776 1.6801 7.0613 21 6 -0.7015 -1.1038 3.7837 22 6 -0.9891 -2.4600 3.7060 23 6 -1.9831 -3.0023 4.4970 24 6 -2.6963 -2.1953 5.3712 25 6 -2.4095 -0.8378 5.4525 26 6 -1.4125 -0.2935 4.6574 27 8 -3.0957 -0.0308 6.3072 28 6 -4.3362 -0.5360 6.8132 29 6 -4.1145 -1.9844 7.2693 30 8 -3.6755 -2.7476 6.1403 31 1 -0.3633 0.4059 0.9441 32 1 -0.3633 0.6146 -0.8236 33 1 -0.3634 -1.0206 -0.1205 34 1 4.0685 -0.6589 -0.7356 35 1 3.4584 -2.1908 -1.4401 36 1 3.8332 -2.0225 1.2374 37 1 2.3541 -2.8222 0.6104 38 1 1.0524 1.2492 2.2120 39 1 -0.1452 1.4226 3.5174 40 1 2.2966 4.0980 4.1854 41 1 -0.4320 -3.0919 3.0302 42 1 -2.2054 -4.0574 4.4347 43 1 -1.1885 0.7612 4.7189 44 1 -5.0916 -0.5094 6.0279 45 1 -4.6624 0.0698 7.6586 46 1 -5.0485 -2.3967 7.6509 47 1 -3.3542 -2.0124 8.0499 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092410356.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:11 Heat of formation + Delta-G solvation = -120.950297 kcal Electronic energy + Delta-G solvation = -32140.110302 eV Core-core repulsion = 27867.892878 eV Total energy + Delta-G solvation = -4272.217424 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.47758 -41.86935 -40.02034 -38.31828 -38.18417 -36.79740 -34.61183 -33.62782 -32.44871 -31.92294 -31.20128 -29.78742 -28.69707 -27.33046 -25.80835 -25.26919 -24.06011 -23.16394 -22.89893 -21.81077 -20.13130 -19.48078 -18.94465 -18.77382 -18.14121 -17.69597 -17.60656 -16.94228 -16.68791 -16.52630 -16.31384 -15.99759 -15.92592 -15.81549 -15.35142 -14.98445 -14.86329 -14.66406 -14.45665 -14.31487 -13.77828 -13.63225 -13.47472 -13.43909 -13.24949 -13.20413 -12.95991 -12.75366 -12.58831 -12.53874 -12.22718 -12.13463 -11.96048 -11.94134 -11.76401 -11.70849 -11.41898 -10.79362 -10.64389 -10.54853 -10.27967 -9.49753 -8.56662 -8.21516 -6.40138 0.20016 0.32928 1.40032 1.41833 1.48040 1.55752 1.85438 2.13439 2.36177 2.44166 2.79024 2.85428 3.05631 3.32658 3.35575 3.56597 3.70725 3.78433 3.98007 4.07744 4.09325 4.16706 4.27002 4.29431 4.32559 4.36895 4.44689 4.50784 4.56820 4.59652 4.65533 4.70124 4.77701 4.84502 4.94147 4.96040 5.02127 5.06891 5.12252 5.15939 5.18484 5.30423 5.46679 5.63857 5.88574 5.92848 5.94579 6.01808 6.38087 6.46528 6.70383 7.08901 7.31283 8.80217 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.008934 B = 0.004518 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3133.239434 B = 6196.208828 C = 8351.998972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.097 3.903 3 H 0.083 0.917 4 O -0.386 6.386 5 C 0.049 3.951 6 C -0.139 4.139 7 C -0.144 4.144 8 H 0.113 0.887 9 C 0.536 3.464 10 O -0.547 6.547 11 N -0.536 5.536 12 C 0.242 3.758 13 C -0.548 4.548 14 H 0.051 0.949 15 C 0.031 3.969 16 N -0.912 5.912 17 Si 0.951 3.049 18 H -0.265 1.265 19 H -0.279 1.279 20 H -0.279 1.279 21 C 0.158 3.842 22 C -0.176 4.176 23 C -0.091 4.091 24 C 0.013 3.987 25 C 0.068 3.932 26 C -0.163 4.163 27 O -0.327 6.327 28 C 0.012 3.988 29 C 0.016 3.984 30 O -0.318 6.318 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.049 0.951 39 H 0.029 0.971 40 H 0.270 0.730 41 H 0.180 0.820 42 H 0.156 0.844 43 H 0.125 0.875 44 H 0.081 0.919 45 H 0.153 0.847 46 H 0.160 0.840 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.122 -8.010 0.237 10.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.039 3.961 3 H 0.100 0.900 4 O -0.306 6.306 5 C -0.027 4.027 6 C -0.176 4.176 7 C -0.165 4.165 8 H 0.131 0.869 9 C 0.328 3.672 10 O -0.429 6.429 11 N -0.255 5.255 12 C 0.122 3.878 13 C -0.587 4.587 14 H 0.069 0.931 15 C -0.171 4.171 16 N -0.550 5.550 17 Si 0.777 3.223 18 H -0.190 1.190 19 H -0.204 1.204 20 H -0.205 1.205 21 C 0.063 3.937 22 C -0.195 4.195 23 C -0.110 4.110 24 C -0.032 4.032 25 C 0.023 3.977 26 C -0.184 4.184 27 O -0.242 6.242 28 C -0.062 4.062 29 C -0.059 4.059 30 O -0.233 6.233 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.136 0.864 36 H 0.117 0.883 37 H 0.103 0.897 38 H 0.067 0.933 39 H 0.047 0.953 40 H 0.079 0.921 41 H 0.196 0.804 42 H 0.174 0.826 43 H 0.143 0.857 44 H 0.099 0.901 45 H 0.171 0.829 46 H 0.177 0.823 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.382 -8.313 -0.085 10.481 hybrid contribution 0.617 0.840 1.342 1.699 sum -5.765 -7.473 1.257 9.521 Atomic orbital electron populations 1.22109 0.94123 1.02664 1.02924 1.22473 0.95025 0.95575 0.83041 0.89963 1.88834 1.41026 1.67997 1.32725 1.23751 0.87087 0.97200 0.94635 1.23170 0.99918 0.97597 0.96961 1.22868 0.95844 1.00275 0.97530 0.86939 1.20569 0.83134 0.84636 0.78864 1.90256 1.65070 1.19732 1.67796 1.45954 1.33223 1.14498 1.31832 1.19414 0.95395 0.75047 0.97907 1.21451 1.19135 0.93189 1.24898 0.93113 1.25533 0.98935 0.94979 0.97627 1.69972 1.42966 0.98651 1.43459 0.85702 0.79808 0.77391 0.79420 1.19012 1.20409 1.20507 1.17832 0.90231 0.92690 0.92979 1.22395 1.00242 0.93840 1.03048 1.20603 0.94514 1.00367 0.95525 1.18882 0.95547 0.90150 0.98645 1.18491 0.96055 0.88600 0.94579 1.20094 0.98893 1.00548 0.98910 1.86292 1.35585 1.43211 1.59145 1.24012 0.83634 0.96732 1.01855 1.23922 1.03667 0.91678 0.86617 1.86263 1.51479 1.45871 1.39720 0.91956 0.90145 0.92551 0.90432 0.86412 0.88320 0.89689 0.93273 0.95349 0.92054 0.80374 0.82641 0.85694 0.90099 0.82922 0.82275 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.49 8.34 71.98 0.60 -4.89 16 2 C 0.10 3.24 3.31 30.97 0.10 3.35 16 3 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 4 O -0.39 -12.15 11.19 -148.98 -1.67 -13.82 16 5 C 0.05 1.21 7.72 72.66 0.56 1.77 16 6 C -0.14 -3.96 6.64 31.89 0.21 -3.75 16 7 C -0.14 -5.07 2.46 -10.55 -0.03 -5.10 16 8 H 0.11 4.32 6.61 -2.39 -0.02 4.30 16 9 C 0.54 21.50 4.67 87.66 0.41 21.91 16 10 O -0.55 -22.49 11.79 -3.06 -0.04 -22.53 16 11 N -0.54 -23.09 2.08 -635.26 -1.32 -24.41 16 12 C 0.24 11.38 3.52 85.63 0.30 11.68 16 13 C -0.55 -27.96 8.70 25.60 0.22 -27.74 16 14 H 0.05 2.67 7.81 -2.91 -0.02 2.64 16 15 C 0.03 1.58 5.46 84.66 0.46 2.04 16 16 N -0.91 -48.63 13.29 21.45 0.28 -48.34 16 17 Si 0.95 41.04 29.54 68.60 2.03 43.07 16 18 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 19 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 21 C 0.16 6.74 6.50 38.09 0.25 6.99 16 22 C -0.18 -6.80 9.00 22.39 0.20 -6.60 16 23 C -0.09 -3.09 9.95 22.36 0.22 -2.87 16 24 C 0.01 0.45 6.50 22.56 0.15 0.60 16 25 C 0.07 2.57 6.49 22.55 0.15 2.72 16 26 C -0.16 -6.94 9.18 22.49 0.21 -6.73 16 27 O -0.33 -10.94 10.42 -82.56 -0.86 -11.80 16 28 C 0.01 0.25 7.26 72.14 0.52 0.78 16 29 C 0.02 0.31 7.26 72.14 0.52 0.83 16 30 O -0.32 -8.99 10.42 -83.70 -0.87 -9.86 16 31 H 0.06 2.32 5.21 -2.39 -0.01 2.31 16 32 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.06 2.02 7.54 -2.38 -0.02 2.00 16 34 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.08 2.61 6.82 -2.38 -0.02 2.60 16 38 H 0.05 2.30 5.50 -2.39 -0.01 2.29 16 39 H 0.03 1.45 5.98 -2.39 -0.01 1.43 16 40 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 41 H 0.18 7.09 4.64 -53.36 -0.25 6.84 16 42 H 0.16 4.34 8.06 -2.91 -0.02 4.32 16 43 H 0.13 5.79 6.02 -2.91 -0.02 5.77 16 44 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.15 2.01 8.14 -2.38 -0.02 1.99 16 46 H 0.16 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -63.39 368.75 3.39 -59.99 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: 0.77 Total: 32.71 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 5.06 Total: -5.01 kcal Atomic # 7 Polarization: -71.71 SS G_CDS: -1.04 Total: -72.75 kcal Atomic # 8 Polarization: -54.57 SS G_CDS: -3.43 Total: -58.01 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -63.39 3.39 -59.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092410356.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.956 kcal (2) G-P(sol) polarization free energy of solvation -63.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds