Wall clock time and date at job start Wed Apr 1 2020 05:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47266 * 2 1 4 4 O 1.45201 * 109.47202 * 179.97438 * 3 2 1 5 5 C 1.34230 * 117.00054 * 180.02562 * 4 3 2 6 6 O 1.20832 * 119.99835 * 359.97438 * 5 4 3 7 7 C 1.50697 * 120.00252 * 179.97438 * 5 4 3 8 8 C 1.52994 * 109.47379 * 179.97438 * 7 5 4 9 9 N 1.46497 * 109.47283 * 179.97438 * 8 7 5 10 10 C 1.34780 * 120.00068 * 179.72438 * 9 8 7 11 11 O 1.21718 * 119.99956 * 0.02562 * 10 9 8 12 12 C 1.46256 * 119.99800 * 180.02562 * 10 9 8 13 13 C 1.35022 * 119.99894 * 180.02562 * 12 10 9 14 14 C 1.46957 * 120.00300 * 180.02562 * 13 12 10 15 15 C 1.40029 * 120.09915 * 359.72225 * 14 13 12 16 16 C 1.37601 * 119.89798 * 179.69970 * 15 14 13 17 17 C 1.39180 * 120.09887 * 0.60088 * 16 15 14 18 18 O 1.35565 * 119.89376 * 179.69676 * 17 16 15 19 19 C 1.34792 * 116.99720 * 174.42235 * 18 17 16 20 20 H 1.07998 * 119.99415 * 5.05109 * 19 18 17 21 21 C 1.38711 * 120.00019 * 185.05884 * 19 18 17 22 22 N 1.31509 * 120.00308 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00153 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46612 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47242 * 119.99850 * 23 21 19 26 26 H 1.48501 * 109.46802 * 239.99820 * 23 21 19 27 27 C 1.39171 * 120.20408 * 359.67315 * 17 16 15 28 28 C 1.37600 * 120.10110 * 0.02662 * 27 17 16 29 29 H 1.08999 * 109.47669 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47411 * 300.00282 * 1 2 3 31 31 H 1.09004 * 109.47010 * 59.99908 * 1 2 3 32 32 H 1.09000 * 109.47411 * 239.99718 * 2 1 3 33 33 H 1.08999 * 109.47081 * 119.99615 * 2 1 3 34 34 H 1.09008 * 109.46994 * 59.99828 * 3 2 1 35 35 H 1.09004 * 109.47182 * 299.99987 * 3 2 1 36 36 H 1.08999 * 109.47049 * 59.99602 * 7 5 4 37 37 H 1.09000 * 109.46912 * 299.99874 * 7 5 4 38 38 H 1.08999 * 109.46934 * 60.00047 * 8 7 5 39 39 H 1.09000 * 109.47417 * 300.00080 * 8 7 5 40 40 H 0.97000 * 119.99919 * 0.02562 * 9 8 7 41 41 H 1.08004 * 120.00191 * 0.02562 * 12 10 9 42 42 H 1.08004 * 119.99914 * 359.97438 * 13 12 10 43 43 H 1.08004 * 120.05337 * 359.97438 * 15 14 13 44 44 H 1.07999 * 119.94808 * 180.27028 * 16 15 14 45 45 H 0.96998 * 120.00252 * 180.02562 * 22 21 19 46 46 H 1.08001 * 119.94985 * 180.02562 * 27 17 16 47 47 H 1.07997 * 120.05103 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4920 1.4425 0.0006 5 6 4.1014 2.6384 0.0012 6 8 3.4433 3.6518 0.0008 7 6 5.6063 2.7173 0.0025 8 6 6.0402 4.1845 0.0023 9 7 7.5031 4.2612 0.0041 10 6 8.1150 5.4621 -0.0013 11 8 7.4521 6.4828 -0.0072 12 6 9.5756 5.5385 0.0000 13 6 10.1886 6.7416 -0.0049 14 6 11.6561 6.8185 -0.0042 15 6 12.4209 5.6455 0.0074 16 6 13.7947 5.7223 0.0017 17 6 14.4244 6.9636 -0.0029 18 8 15.7782 7.0344 -0.0022 19 6 16.3268 8.2596 -0.1235 20 1 15.6951 9.1355 -0.1334 21 6 17.7027 8.3954 -0.2358 22 7 18.4719 7.3288 -0.2234 23 14 18.4632 10.0934 -0.4032 24 1 17.3900 11.1198 -0.3898 25 1 19.3926 10.3334 0.7297 26 1 19.2112 10.1766 -1.6833 27 6 13.6685 8.1321 -0.0086 28 6 12.2941 8.0649 -0.0092 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 5.9968 2.2233 -0.8872 37 1 5.9953 2.2232 0.8927 38 1 5.6497 4.6789 0.8918 39 1 5.6512 4.6784 -0.8881 40 1 8.0314 3.4477 0.0048 41 1 10.1638 4.6327 0.0048 42 1 9.6004 7.6474 -0.0102 43 1 11.9331 4.6819 0.0163 44 1 14.3853 4.8181 0.0063 45 1 19.4341 7.4238 -0.3015 46 1 14.1613 9.0931 -0.0126 47 1 11.7083 8.9722 -0.0141 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106834750.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:40 Heat of formation + Delta-G solvation = -125.734631 kcal Electronic energy + Delta-G solvation = -27245.222107 eV Core-core repulsion = 22972.797218 eV Total energy + Delta-G solvation = -4272.424888 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.98543 -39.60582 -39.12829 -37.39239 -36.91030 -35.36572 -34.41642 -33.22280 -32.33448 -31.50309 -30.43778 -28.36217 -27.37279 -25.75961 -24.86221 -22.88028 -22.16305 -22.09702 -21.26953 -20.79869 -19.34770 -18.20488 -18.15198 -17.38858 -17.21413 -17.11259 -16.61762 -15.96436 -15.66805 -15.07094 -14.95436 -14.78075 -14.44692 -14.23488 -14.02975 -13.92269 -13.82241 -13.34514 -13.15864 -13.13944 -13.04706 -12.70866 -12.60480 -12.36720 -12.00857 -11.95128 -11.75571 -11.74184 -11.72367 -11.72152 -11.15223 -11.08527 -10.99392 -10.96048 -10.67181 -10.53743 -9.84415 -9.62211 -9.50413 -9.21829 -8.86479 -8.39168 -7.12636 -6.66241 -4.21081 1.05630 1.73389 2.03114 2.12695 2.54467 3.03054 3.04425 3.10130 3.23424 3.56406 3.81523 4.06108 4.24585 4.29380 4.40730 4.49158 4.50808 4.66658 4.84304 4.85333 4.91395 4.99583 5.02023 5.03505 5.03793 5.26263 5.37189 5.43073 5.46207 5.51604 5.55288 5.57694 5.65809 5.68602 5.96652 6.00451 6.10764 6.25373 6.45156 6.46963 6.59596 6.78150 6.91133 7.12129 7.22671 7.26554 7.27118 7.47906 7.62953 7.79317 8.30253 8.78785 9.45542 10.50464 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.045310 B = 0.001172 C = 0.001144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.818774 B =23887.874565 C =24458.995827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C 0.065 3.935 4 O -0.359 6.359 5 C 0.467 3.533 6 O -0.501 6.501 7 C -0.126 4.126 8 C 0.132 3.868 9 N -0.736 5.736 10 C 0.557 3.443 11 O -0.554 6.554 12 C -0.284 4.284 13 C 0.040 3.960 14 C -0.200 4.200 15 C -0.043 4.043 16 C -0.200 4.200 17 C 0.167 3.833 18 O -0.163 6.163 19 C -0.393 4.393 20 H 0.098 0.902 21 C 0.042 3.958 22 N -0.852 5.852 23 Si 0.944 3.056 24 H -0.264 1.264 25 H -0.274 1.274 26 H -0.274 1.274 27 C -0.242 4.242 28 C -0.034 4.034 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.401 0.599 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.274 0.726 46 H 0.131 0.869 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.580 -13.855 0.291 29.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.009 4.009 4 O -0.276 6.276 5 C 0.309 3.691 6 O -0.388 6.388 7 C -0.164 4.164 8 C 0.008 3.992 9 N -0.389 5.389 10 C 0.349 3.651 11 O -0.434 6.434 12 C -0.305 4.305 13 C 0.020 3.980 14 C -0.201 4.201 15 C -0.061 4.061 16 C -0.219 4.219 17 C 0.111 3.889 18 O -0.064 6.064 19 C -0.468 4.468 20 H 0.115 0.885 21 C -0.164 4.164 22 N -0.485 5.485 23 Si 0.768 3.232 24 H -0.188 1.188 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.261 4.261 28 C -0.053 4.053 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.235 0.765 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.084 0.916 46 H 0.149 0.851 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -26.832 -13.061 0.295 29.843 hybrid contribution 0.513 0.412 -0.077 0.663 sum -26.319 -12.648 0.218 29.201 Atomic orbital electron populations 1.21697 0.94033 1.02680 1.02437 1.21524 0.96250 0.94554 1.03843 1.23184 0.76021 0.98792 1.02883 1.86473 1.23714 1.33368 1.84034 1.23388 0.91682 0.81410 0.72600 1.90733 1.67179 1.36241 1.44693 1.21517 0.88451 0.99650 1.06816 1.20970 0.80783 0.93299 1.04156 1.45764 1.06441 1.09018 1.77691 1.18408 0.88824 0.82569 0.75291 1.90800 1.67317 1.34579 1.50728 1.22394 0.91931 0.99281 1.16883 1.22298 0.92884 0.97417 0.85374 1.18465 0.91434 0.93650 1.16550 1.20881 0.92607 0.96940 0.95654 1.20152 0.93905 0.95728 1.12099 1.19616 0.84588 0.93460 0.91274 1.83904 1.14197 1.32658 1.75592 1.21532 0.91053 0.82349 1.51906 0.88471 1.25391 0.95110 0.99932 0.95992 1.70020 1.05466 1.28984 1.43991 0.85588 0.79348 0.79723 0.78498 1.18835 1.19902 1.19895 1.21104 0.93775 0.98894 1.12364 1.20994 0.93927 0.96053 0.94288 0.91541 0.92247 0.92241 0.90684 0.90686 0.91043 0.91035 0.86765 0.86756 0.90556 0.90549 0.76475 0.85781 0.85908 0.86384 0.86125 0.91636 0.85109 0.86793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.48 9.91 37.16 0.37 -0.11 16 2 C -0.12 -0.52 6.31 -26.73 -0.17 -0.69 16 3 C 0.06 0.40 5.47 37.16 0.20 0.61 16 4 O -0.36 -2.70 10.22 -39.26 -0.40 -3.11 16 5 C 0.47 3.92 7.96 36.00 0.29 4.21 16 6 O -0.50 -5.91 15.73 -18.75 -0.30 -6.21 16 7 C -0.13 -0.71 5.92 -27.89 -0.17 -0.88 16 8 C 0.13 1.22 4.96 -4.05 -0.02 1.20 16 9 N -0.74 -6.96 5.55 -61.76 -0.34 -7.30 16 10 C 0.56 7.63 7.74 -13.04 -0.10 7.53 16 11 O -0.55 -9.83 16.23 5.17 0.08 -9.74 16 12 C -0.28 -3.73 9.41 -37.50 -0.35 -4.09 16 13 C 0.04 0.60 9.45 -37.20 -0.35 0.25 16 14 C -0.20 -3.36 5.87 -105.03 -0.62 -3.98 16 15 C -0.04 -0.71 9.40 -39.14 -0.37 -1.08 16 16 C -0.20 -3.93 9.97 -39.46 -0.39 -4.32 16 17 C 0.17 3.80 6.66 -38.89 -0.26 3.54 16 18 O -0.16 -4.38 9.74 0.73 0.01 -4.38 16 19 C -0.39 -10.38 9.48 30.91 0.29 -10.09 16 20 H 0.10 2.37 5.18 -52.49 -0.27 2.09 16 21 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 22 N -0.85 -23.71 13.67 55.48 0.76 -22.95 16 23 Si 0.94 19.43 29.55 -169.99 -5.02 14.41 16 24 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 25 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 26 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 27 C -0.24 -4.97 9.14 -39.47 -0.36 -5.33 16 28 C -0.03 -0.60 9.78 -39.15 -0.38 -0.99 16 29 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.45 8.13 -51.92 -0.42 0.03 16 35 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16 36 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.84 8.10 -51.93 -0.42 0.41 16 39 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 40 H 0.40 2.44 8.45 -40.82 -0.34 2.09 16 41 H 0.12 1.35 6.07 -52.48 -0.32 1.03 16 42 H 0.12 1.85 7.52 -52.48 -0.39 1.45 16 43 H 0.12 1.57 6.16 -52.48 -0.32 1.25 16 44 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 45 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 46 H 0.13 2.67 5.62 -52.49 -0.29 2.37 16 47 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 407.84 15.07 6.15 6.15 Total: -1.00 -33.39 407.84 -8.13 -41.52 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -6.57 Total: 4.83 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -2.49 Total: -13.21 kcal Atomic # 7 Polarization: -30.67 SS G_CDS: 0.42 Total: -30.26 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.61 Total: -23.43 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.39 -8.13 -41.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106834750.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.219 kcal (2) G-P(sol) polarization free energy of solvation -33.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds