Wall clock time and date at job start Wed Apr 1 2020 05:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34236 * 116.99772 * 2 1 4 4 O 1.20828 * 119.99701 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00016 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.46984 * 180.02562 * 5 3 2 7 7 C 1.36719 * 119.99741 * 264.81456 * 6 5 3 8 8 H 1.08001 * 119.99462 * 142.46827 * 7 6 5 9 9 C 1.39121 * 119.99967 * 322.47239 * 7 6 5 10 10 N 1.31320 * 119.99975 * 156.32171 * 9 7 6 11 11 Si 1.86801 * 120.00262 * 336.31730 * 9 7 6 12 12 H 1.48502 * 109.46816 * 94.60668 * 11 9 7 13 13 H 1.48496 * 109.47198 * 214.61030 * 11 9 7 14 14 H 1.48496 * 109.46929 * 334.60984 * 11 9 7 15 15 C 1.34773 * 120.00225 * 84.81758 * 6 5 3 16 16 O 1.21764 * 119.99623 * 359.97438 * 15 6 5 17 17 C 1.46228 * 120.00037 * 179.97438 * 15 6 5 18 18 C 1.34978 * 120.00139 * 179.97438 * 17 15 6 19 19 C 1.47147 * 120.00323 * 179.97438 * 18 17 15 20 20 C 1.39912 * 120.14401 * 0.02646 * 19 18 17 21 21 C 1.37887 * 119.93365 * 179.97438 * 20 19 18 22 22 C 1.38346 * 120.23227 * 359.97438 * 21 20 19 23 23 C 1.38862 * 120.30171 * 359.78872 * 22 21 20 24 24 O 1.35904 * 119.97521 * 180.25508 * 23 22 21 25 25 C 1.42903 * 117.00052 * 355.54346 * 24 23 22 26 26 C 1.53007 * 109.46523 * 82.79337 * 25 24 23 27 27 C 1.52995 * 109.47325 * 202.79188 * 25 24 23 28 28 C 1.38420 * 120.05687 * 0.46868 * 23 22 21 29 29 H 1.09001 * 109.46591 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47114 * 299.99979 * 1 2 3 31 31 H 1.08996 * 109.47082 * 60.00146 * 1 2 3 32 32 H 1.08999 * 109.46597 * 60.00038 * 5 3 2 33 33 H 1.09000 * 109.47156 * 300.00183 * 5 3 2 34 34 H 0.96996 * 120.00275 * 179.97438 * 10 9 7 35 35 H 1.08000 * 120.00113 * 0.02562 * 17 15 6 36 36 H 1.08000 * 119.99748 * 0.02562 * 18 17 15 37 37 H 1.07992 * 120.03476 * 359.97438 * 20 19 18 38 38 H 1.07996 * 119.88367 * 179.97438 * 21 20 19 39 39 H 1.08004 * 119.85008 * 180.02562 * 22 21 20 40 40 H 1.08997 * 109.47083 * 322.79450 * 25 24 23 41 41 H 1.08997 * 109.47349 * 60.00276 * 26 25 24 42 42 H 1.09003 * 109.46784 * 180.02562 * 26 25 24 43 43 H 1.09000 * 109.47300 * 299.99619 * 26 25 24 44 44 H 1.08997 * 109.47207 * 60.00145 * 27 25 24 45 45 H 1.09003 * 109.46895 * 180.02562 * 27 25 24 46 46 H 1.08997 * 109.47254 * 300.00157 * 27 25 24 47 47 H 1.08000 * 120.11284 * 179.79326 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9816 2.6799 0.0011 7 6 4.2784 3.3054 -1.1779 8 1 4.0013 4.3387 -1.3256 9 6 4.9374 2.6107 -2.1872 10 7 4.8225 3.0009 -3.4358 11 14 5.9856 1.1229 -1.7663 12 1 5.1759 -0.1125 -1.9200 13 1 7.1541 1.0659 -2.6809 14 1 6.4599 1.2324 -0.3634 15 6 4.0711 3.3558 1.1636 16 8 3.8063 2.7988 2.2136 17 6 4.4862 4.7579 1.1641 18 6 4.5753 5.4350 2.3284 19 6 4.9935 6.8458 2.3290 20 6 5.2990 7.4886 1.1244 21 6 5.6899 8.8108 1.1300 22 6 5.7809 9.5053 2.3230 23 6 5.4753 8.8783 3.5238 24 8 5.5620 9.5683 4.6914 25 6 6.0670 10.9033 4.6202 26 6 4.9370 11.8554 4.2231 27 6 6.6221 11.3121 5.9860 28 6 5.0867 7.5498 3.5329 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.9563 0.7807 -0.8892 33 1 3.9557 0.7811 0.8908 34 1 5.2822 2.5169 -4.1395 35 1 4.7206 5.2520 0.2329 36 1 4.3405 4.9410 3.2597 37 1 5.2286 6.9497 0.1912 38 1 5.9259 9.3061 0.1997 39 1 6.0873 10.5410 2.3202 40 1 6.8615 10.9519 3.8756 41 1 4.1424 11.8068 4.9677 42 1 5.3222 12.8736 4.1683 43 1 4.5415 11.5641 3.2501 44 1 7.4271 10.6338 6.2688 45 1 7.0069 12.3305 5.9317 46 1 5.8276 11.2635 6.7305 47 1 4.8521 7.0603 4.4666 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120469526.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:00 Heat of formation + Delta-G solvation = -117.592358 kcal Electronic energy + Delta-G solvation = -29699.843023 eV Core-core repulsion = 25427.771210 eV Total energy + Delta-G solvation = -4272.071813 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.76372 -41.26705 -40.47196 -38.88468 -37.61924 -36.82016 -34.83126 -34.10795 -34.05613 -31.59715 -30.78578 -29.88294 -28.17601 -27.96417 -27.03611 -25.15174 -23.55992 -23.24829 -22.31966 -21.23576 -20.51115 -19.25349 -18.96306 -18.78627 -18.33947 -17.49899 -17.26104 -17.13979 -17.02475 -16.58140 -16.39297 -15.97536 -15.69498 -15.32681 -15.01750 -14.74638 -14.58841 -14.53907 -14.40092 -14.21958 -14.11523 -13.74114 -13.52318 -13.34239 -13.18302 -13.14972 -13.01089 -12.88438 -12.79608 -12.45501 -12.26642 -12.12996 -11.96133 -11.84367 -11.81399 -11.74972 -11.54199 -11.23923 -11.07609 -10.72333 -9.99270 -9.46724 -9.04718 -8.58927 -6.20253 -0.44478 0.46739 0.96967 1.10643 1.20406 1.36612 1.45128 1.58738 2.13603 2.19412 2.30899 2.54534 2.86016 3.00962 3.69577 3.79318 3.86552 3.90122 3.92048 4.00590 4.03172 4.09295 4.15850 4.25062 4.27259 4.28588 4.29444 4.45591 4.47100 4.60642 4.62804 4.71384 4.82772 4.87951 4.91363 4.95564 5.13776 5.17906 5.19626 5.26099 5.27801 5.33202 5.42335 5.48090 5.72404 5.77757 5.96650 6.09583 6.49196 6.68694 6.83591 7.21806 7.58393 8.54567 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.014581 B = 0.002357 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.857649 B =11875.128519 C =12900.258753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.452 3.548 4 O -0.525 6.525 5 C 0.098 3.902 6 N -0.446 5.446 7 C -0.352 4.352 8 H 0.082 0.918 9 C 0.033 3.967 10 N -0.881 5.881 11 Si 0.910 3.090 12 H -0.245 1.245 13 H -0.272 1.272 14 H -0.256 1.256 15 C 0.509 3.491 16 O -0.616 6.616 17 C -0.171 4.171 18 C -0.048 4.048 19 C -0.034 4.034 20 C -0.154 4.154 21 C -0.078 4.078 22 C -0.199 4.199 23 C 0.123 3.877 24 O -0.326 6.326 25 C 0.066 3.934 26 C -0.180 4.180 27 C -0.146 4.146 28 C -0.148 4.148 29 H 0.143 0.857 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.117 0.883 33 H 0.127 0.873 34 H 0.285 0.715 35 H 0.138 0.862 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.153 0.847 39 H 0.156 0.844 40 H 0.083 0.917 41 H 0.060 0.940 42 H 0.095 0.905 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.101 0.899 46 H 0.062 0.938 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.017 10.995 10.456 15.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.294 3.706 4 O -0.413 6.413 5 C -0.026 4.026 6 N -0.165 5.165 7 C -0.479 4.479 8 H 0.100 0.900 9 C -0.173 4.173 10 N -0.515 5.515 11 Si 0.733 3.267 12 H -0.170 1.170 13 H -0.197 1.197 14 H -0.180 1.180 15 C 0.303 3.697 16 O -0.505 6.505 17 C -0.192 4.192 18 C -0.068 4.068 19 C -0.034 4.034 20 C -0.172 4.172 21 C -0.096 4.096 22 C -0.217 4.217 23 C 0.078 3.922 24 O -0.241 6.241 25 C 0.010 3.990 26 C -0.237 4.237 27 C -0.203 4.203 28 C -0.167 4.167 29 H 0.161 0.839 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.134 0.866 33 H 0.145 0.855 34 H 0.095 0.905 35 H 0.156 0.844 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.171 0.829 39 H 0.174 0.826 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.114 0.886 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.119 0.881 46 H 0.081 0.919 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.636 10.926 10.908 15.662 hybrid contribution -0.033 -0.585 -0.593 0.834 sum 2.603 10.341 10.315 14.836 Atomic orbital electron populations 1.23573 0.74818 1.05963 1.02190 1.86487 1.25198 1.32224 1.84080 1.24604 0.92834 0.81664 0.71458 1.90602 1.67291 1.37633 1.45800 1.21540 0.87604 0.87395 1.06101 1.43250 1.57453 1.09211 1.06601 1.18876 1.39208 0.99141 0.90682 0.90001 1.25960 0.96510 1.00795 0.94073 1.69805 1.39165 1.42451 1.00106 0.86363 0.80122 0.80145 0.80083 1.16991 1.19740 1.17976 1.18714 0.79738 0.88758 0.82485 1.90638 1.56319 1.71437 1.32062 1.23000 1.03020 0.93175 0.99961 1.22271 0.94376 0.92226 0.97939 1.18755 0.98922 0.92275 0.93427 1.21567 1.01985 0.96169 0.97520 1.21172 0.96381 0.93198 0.98866 1.21647 1.06612 1.02030 0.91454 1.18861 0.96345 0.91179 0.85809 1.86119 1.80474 1.28623 1.28903 1.22766 0.96575 0.78937 1.00691 1.22411 0.98820 1.00409 1.02069 1.21877 1.01342 1.02865 0.94198 1.20639 1.05409 0.92562 0.98105 0.83936 0.92372 0.92435 0.86574 0.85524 0.90466 0.84418 0.85472 0.85636 0.82929 0.82618 0.89914 0.92052 0.88643 0.92466 0.92064 0.88082 0.91853 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.56 113.37 1.20 1.95 16 2 O -0.36 -13.24 10.57 -51.48 -0.54 -13.78 16 3 C 0.45 20.27 7.99 71.24 0.57 20.84 16 4 O -0.53 -26.90 16.06 21.96 0.35 -26.55 16 5 C 0.10 4.40 4.59 85.63 0.39 4.80 16 6 N -0.45 -22.35 1.70 -644.64 -1.10 -23.45 16 7 C -0.35 -18.67 8.87 84.14 0.75 -17.92 16 8 H 0.08 4.67 6.92 -2.91 -0.02 4.65 16 9 C 0.03 1.70 5.24 84.98 0.45 2.15 16 10 N -0.88 -47.39 13.95 21.69 0.30 -47.08 16 11 Si 0.91 38.38 25.18 68.60 1.73 40.11 16 12 H -0.24 -9.36 6.63 99.48 0.66 -8.70 16 13 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 14 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 15 C 0.51 25.27 7.39 86.32 0.64 25.91 16 16 O -0.62 -32.10 15.90 -4.55 -0.07 -32.17 16 17 C -0.17 -7.44 8.67 23.60 0.20 -7.23 16 18 C -0.05 -1.80 9.46 23.86 0.23 -1.57 16 19 C -0.03 -1.09 5.87 -20.16 -0.12 -1.21 16 20 C -0.15 -4.65 9.41 22.59 0.21 -4.44 16 21 C -0.08 -1.87 10.02 22.21 0.22 -1.65 16 22 C -0.20 -4.35 8.16 22.44 0.18 -4.16 16 23 C 0.12 3.15 6.57 22.46 0.15 3.30 16 24 O -0.33 -7.55 9.81 -92.46 -0.91 -8.46 16 25 C 0.07 0.99 2.86 30.59 0.09 1.08 16 26 C -0.18 -2.29 9.13 71.98 0.66 -1.64 16 27 C -0.15 -1.65 9.56 71.98 0.69 -0.96 16 28 C -0.15 -4.33 9.73 22.69 0.22 -4.11 16 29 H 0.14 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.06 1.61 8.13 -2.39 -0.02 1.59 16 31 H 0.06 1.62 8.13 -2.39 -0.02 1.60 16 32 H 0.12 4.98 3.62 -2.39 -0.01 4.97 16 33 H 0.13 5.19 7.58 -2.39 -0.02 5.17 16 34 H 0.29 14.07 8.31 -92.71 -0.77 13.30 16 35 H 0.14 5.90 4.52 -2.91 -0.01 5.89 16 36 H 0.13 4.80 7.52 -2.91 -0.02 4.78 16 37 H 0.13 3.97 6.16 -2.91 -0.02 3.96 16 38 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 39 H 0.16 2.42 5.35 -2.91 -0.02 2.41 16 40 H 0.08 1.08 6.40 -2.39 -0.02 1.06 16 41 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.06 0.83 6.73 -2.39 -0.02 0.82 16 44 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.14 3.72 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -70.16 392.43 7.44 -62.73 By element: Atomic # 1 Polarization: 32.58 SS G_CDS: 0.95 Total: 33.54 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: 6.72 Total: 15.12 kcal Atomic # 7 Polarization: -69.74 SS G_CDS: -0.80 Total: -70.54 kcal Atomic # 8 Polarization: -79.79 SS G_CDS: -1.17 Total: -80.96 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 1.73 Total: 40.11 kcal Total: -70.16 7.44 -62.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120469526.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.865 kcal (2) G-P(sol) polarization free energy of solvation -70.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds