Wall clock time and date at job start Wed Apr 1 2020 04:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34224 * 117.00066 * 2 1 4 4 O 1.20827 * 120.00026 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00175 * 180.02562 * 3 2 1 6 6 N 1.46504 * 109.47020 * 179.97438 * 5 3 2 7 7 C 1.36821 * 120.00066 * 269.99693 * 6 5 3 8 8 H 1.07998 * 120.00242 * 194.80179 * 7 6 5 9 9 C 1.39080 * 119.99719 * 14.80556 * 7 6 5 10 10 N 1.31347 * 120.00106 * 8.24397 * 9 7 6 11 11 Si 1.86797 * 119.99673 * 188.24636 * 9 7 6 12 12 H 1.48504 * 109.47377 * 60.00221 * 11 9 7 13 13 H 1.48505 * 109.46845 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47395 * 299.99814 * 11 9 7 15 15 C 1.34774 * 120.00128 * 89.99895 * 6 5 3 16 16 O 1.21658 * 119.99870 * 355.12939 * 15 6 5 17 17 C 1.46954 * 119.99945 * 175.12585 * 15 6 5 18 18 C 1.33126 * 119.99721 * 186.06022 * 17 15 6 19 19 C 1.50704 * 119.99894 * 173.22560 * 18 17 15 20 20 C 1.50702 * 120.00118 * 353.21439 * 18 17 15 21 21 C 1.50710 * 109.46807 * 95.47322 * 20 18 17 22 22 C 1.38159 * 120.02625 * 265.00456 * 21 20 18 23 23 C 1.38244 * 120.05421 * 179.70368 * 22 21 20 24 24 C 1.38289 * 120.11212 * 0.02562 * 23 22 21 25 25 C 1.38122 * 120.05254 * 0.02562 * 24 23 22 26 26 C 1.38703 * 120.02545 * 84.72393 * 21 20 18 27 27 O 1.35905 * 120.05711 * 0.25334 * 26 21 20 28 28 C 1.42905 * 116.99846 * 180.02562 * 27 26 21 29 29 H 1.08996 * 109.46667 * 299.99722 * 1 2 3 30 30 H 1.08995 * 109.47355 * 60.00140 * 1 2 3 31 31 H 1.09004 * 109.46662 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47342 * 60.00003 * 5 3 2 33 33 H 1.08998 * 109.47225 * 299.99792 * 5 3 2 34 34 H 0.96996 * 120.00239 * 185.01225 * 10 9 7 35 35 H 1.07999 * 120.00302 * 6.05554 * 17 15 6 36 36 H 1.08999 * 109.46733 * 269.99627 * 19 18 17 37 37 H 1.08997 * 109.46634 * 29.99295 * 19 18 17 38 38 H 1.08995 * 109.47046 * 149.99422 * 19 18 17 39 39 H 1.08996 * 109.47117 * 335.47749 * 20 18 17 40 40 H 1.08993 * 109.47306 * 215.46846 * 20 18 17 41 41 H 1.08007 * 119.97810 * 359.71495 * 22 21 20 42 42 H 1.08005 * 119.94465 * 179.97438 * 23 22 21 43 43 H 1.07996 * 119.97493 * 180.02562 * 24 23 22 44 44 H 1.08000 * 120.02299 * 179.97438 * 25 24 23 45 45 H 1.08999 * 109.46767 * 299.99919 * 28 27 26 46 46 H 1.08997 * 109.47335 * 60.00125 * 28 27 26 47 47 H 1.09002 * 109.46772 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 4.1752 3.3355 -1.1862 8 1 4.7029 4.2777 -1.2022 9 6 3.6923 2.7888 -2.3704 10 7 2.9138 1.7315 -2.3361 11 14 4.1511 3.5581 -4.0095 12 1 5.6265 3.5269 -4.1755 13 1 3.5133 2.7932 -5.1111 14 1 3.6786 4.9655 -4.0454 15 6 4.1731 3.3263 1.1659 16 8 3.9162 2.7718 2.2178 17 6 4.6923 4.7011 1.1676 18 6 4.9954 5.2966 2.3190 19 6 5.6691 6.6447 2.3155 20 6 4.6647 4.6228 3.6258 21 6 5.8725 3.8708 4.1229 22 6 6.0122 2.5250 3.8434 23 6 7.1228 1.8360 4.2938 24 6 8.0962 2.4913 5.0256 25 6 7.9606 3.8364 5.3085 26 6 6.8474 4.5305 4.8565 27 8 6.7125 5.8544 5.1322 28 6 7.7556 6.4684 5.8919 29 1 -0.3632 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.9557 0.7810 -0.8907 33 1 3.9564 0.7806 0.8891 34 1 2.6362 1.3066 -3.1626 35 1 4.8280 5.2283 0.2348 36 1 6.7508 6.5103 2.3104 37 1 5.3676 7.1992 1.4269 38 1 5.3761 7.1995 3.2068 39 1 3.8392 3.9268 3.4770 40 1 4.3778 5.3754 4.3602 41 1 5.2533 2.0108 3.2723 42 1 7.2301 0.7838 4.0746 43 1 8.9631 1.9510 5.3760 44 1 8.7208 4.3477 5.8804 45 1 7.8389 5.9746 6.8600 46 1 8.6993 6.3760 5.3544 47 1 7.5238 7.5230 6.0411 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120637436.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:30 Heat of formation + Delta-G solvation = -99.242076 kcal Electronic energy + Delta-G solvation = -31733.859162 eV Core-core repulsion = 27462.583077 eV Total energy + Delta-G solvation = -4271.276085 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.44847 -41.06094 -40.18125 -38.25687 -37.50154 -36.64630 -36.00425 -33.48665 -32.58259 -30.89513 -30.62815 -28.68517 -28.26301 -27.69677 -27.34495 -26.27892 -22.98996 -22.75215 -22.18277 -21.26058 -20.19203 -18.90065 -18.43261 -18.21207 -18.01430 -17.20942 -17.05342 -16.91686 -16.59425 -16.52757 -16.15011 -16.04667 -15.40338 -15.09460 -15.01786 -14.53098 -14.38989 -14.30931 -14.15726 -13.82753 -13.64243 -13.51403 -13.35950 -13.13314 -13.06985 -12.93445 -12.77391 -12.70127 -12.46221 -12.39823 -12.15725 -12.12333 -11.86778 -11.83231 -11.60953 -11.53812 -11.39676 -10.89863 -9.95133 -9.90973 -9.73725 -9.56114 -8.94054 -8.31478 -5.90373 0.45951 0.60365 0.71107 1.46811 1.49465 1.56940 1.81820 2.04574 2.34215 2.51556 2.58889 2.93112 2.99286 3.27892 3.98460 4.03589 4.16422 4.18181 4.29096 4.32794 4.36903 4.40539 4.41955 4.46381 4.48449 4.58208 4.61263 4.68441 4.73963 4.78388 4.80751 4.87995 4.91041 4.94775 4.97109 5.13309 5.24018 5.31046 5.44166 5.47561 5.61992 5.68106 5.73295 5.77705 5.84689 5.96969 6.15016 6.39758 6.60697 7.10734 7.30428 7.55082 7.97216 8.71009 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012293 B = 0.003568 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.249458 B = 7844.755623 C = 8890.183299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.377 6.377 3 C 0.495 3.505 4 O -0.548 6.548 5 C 0.157 3.843 6 N -0.437 5.437 7 C -0.335 4.335 8 H 0.113 0.887 9 C -0.010 4.010 10 N -0.908 5.908 11 Si 0.998 3.002 12 H -0.260 1.260 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.487 3.513 16 O -0.601 6.601 17 C -0.214 4.214 18 C -0.041 4.041 19 C -0.103 4.103 20 C -0.066 4.066 21 C -0.108 4.108 22 C -0.095 4.095 23 C -0.174 4.174 24 C -0.089 4.089 25 C -0.215 4.215 26 C 0.117 3.883 27 O -0.325 6.325 28 C 0.018 3.982 29 H 0.049 0.951 30 H 0.042 0.958 31 H 0.133 0.867 32 H 0.128 0.872 33 H 0.085 0.915 34 H 0.272 0.728 35 H 0.126 0.874 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.069 0.931 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.150 0.850 44 H 0.153 0.847 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.677 3.723 10.605 14.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.294 6.294 3 C 0.338 3.662 4 O -0.437 6.437 5 C 0.032 3.968 6 N -0.154 5.154 7 C -0.462 4.462 8 H 0.131 0.869 9 C -0.209 4.209 10 N -0.549 5.549 11 Si 0.822 3.178 12 H -0.184 1.184 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.282 3.718 16 O -0.492 6.492 17 C -0.234 4.234 18 C -0.044 4.044 19 C -0.160 4.160 20 C -0.102 4.102 21 C -0.109 4.109 22 C -0.113 4.113 23 C -0.193 4.193 24 C -0.106 4.106 25 C -0.233 4.233 26 C 0.072 3.928 27 O -0.238 6.238 28 C -0.076 4.076 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.151 0.849 32 H 0.146 0.854 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.144 0.856 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.122 0.878 40 H 0.088 0.912 41 H 0.149 0.851 42 H 0.147 0.853 43 H 0.168 0.832 44 H 0.171 0.829 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.022 3.790 10.863 14.621 hybrid contribution -0.434 0.068 -1.167 1.247 sum 8.587 3.857 9.696 13.514 Atomic orbital electron populations 1.23251 0.76539 1.04691 1.00974 1.86426 1.23818 1.34026 1.85089 1.24037 0.92576 0.80559 0.68982 1.90472 1.67466 1.37803 1.47976 1.20655 0.86950 0.85556 1.03673 1.43513 1.57058 1.08829 1.05966 1.20100 1.34756 1.07599 0.83786 0.86913 1.26087 0.94457 0.97266 1.03085 1.69698 1.33228 1.22781 1.29224 0.84893 0.78812 0.77847 0.76218 1.18446 1.21081 1.19876 1.18796 0.82227 0.87912 0.82895 1.90276 1.59015 1.69234 1.30635 1.22421 1.06877 0.95085 0.99063 1.22532 0.92268 0.96104 0.93502 1.20829 0.99932 0.91945 1.03275 1.20094 0.97758 0.99148 0.93231 1.19089 0.96532 0.93927 1.01319 1.21784 0.98450 0.93937 0.97132 1.21340 0.95329 1.00858 1.01733 1.21227 0.98774 0.94024 0.96618 1.21439 0.98973 0.96139 1.06744 1.18968 0.94282 0.83757 0.95796 1.86080 1.47605 1.19709 1.70439 1.23310 0.90127 0.99223 0.94972 0.93243 0.93888 0.84896 0.85423 0.89742 0.91800 0.85644 0.90582 0.90939 0.90203 0.87827 0.91214 0.85099 0.85261 0.83214 0.82946 0.91952 0.91902 0.86496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.38 10.56 113.37 1.20 2.57 16 2 O -0.38 -16.71 10.57 -51.36 -0.54 -17.25 16 3 C 0.49 25.47 5.92 71.24 0.42 25.89 16 4 O -0.55 -31.89 15.93 21.96 0.35 -31.54 16 5 C 0.16 7.80 5.21 85.63 0.45 8.25 16 6 N -0.44 -22.49 2.11 -643.87 -1.36 -23.85 16 7 C -0.34 -17.13 9.29 84.12 0.78 -16.35 16 8 H 0.11 5.40 5.75 -2.91 -0.02 5.38 16 9 C -0.01 -0.48 5.23 84.97 0.44 -0.04 16 10 N -0.91 -47.47 8.30 21.69 0.18 -47.29 16 11 Si 1.00 40.05 29.56 68.60 2.03 42.08 16 12 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 13 H -0.29 -11.43 7.11 99.48 0.71 -10.73 16 14 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 15 C 0.49 24.03 7.52 86.53 0.65 24.68 16 16 O -0.60 -30.12 9.07 -4.21 -0.04 -30.15 16 17 C -0.21 -9.14 8.91 23.41 0.21 -8.93 16 18 C -0.04 -1.52 5.35 -17.60 -0.09 -1.61 16 19 C -0.10 -2.86 9.48 71.24 0.68 -2.18 16 20 C -0.07 -2.49 4.71 29.11 0.14 -2.35 16 21 C -0.11 -3.84 5.13 -19.77 -0.10 -3.94 16 22 C -0.10 -3.53 9.28 22.25 0.21 -3.33 16 23 C -0.17 -5.27 10.04 22.28 0.22 -5.04 16 24 C -0.09 -2.17 10.04 22.25 0.22 -1.95 16 25 C -0.21 -5.19 9.04 22.36 0.20 -4.98 16 26 C 0.12 3.43 6.66 22.50 0.15 3.58 16 27 O -0.32 -8.12 8.99 -92.49 -0.83 -8.95 16 28 C 0.02 0.27 9.81 113.37 1.11 1.38 16 29 H 0.05 1.73 8.13 -2.39 -0.02 1.71 16 30 H 0.04 1.60 8.13 -2.39 -0.02 1.58 16 31 H 0.13 3.33 8.14 -2.38 -0.02 3.32 16 32 H 0.13 6.39 6.20 -2.39 -0.01 6.37 16 33 H 0.08 3.93 7.49 -2.39 -0.02 3.91 16 34 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 35 H 0.13 5.15 6.10 -2.91 -0.02 5.13 16 36 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.07 1.84 8.06 -2.39 -0.02 1.82 16 38 H 0.08 1.98 8.02 -2.39 -0.02 1.96 16 39 H 0.10 4.68 4.85 -30.77 -0.15 4.53 16 40 H 0.07 2.42 7.66 -2.39 -0.02 2.40 16 41 H 0.13 5.65 4.96 -2.91 -0.01 5.64 16 42 H 0.13 3.43 8.06 -2.91 -0.02 3.41 16 43 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 44 H 0.15 2.60 6.30 -2.91 -0.02 2.58 16 45 H 0.06 0.78 7.66 -2.39 -0.02 0.76 16 46 H 0.06 0.80 7.66 -2.39 -0.02 0.78 16 47 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -68.99 383.86 7.54 -61.46 By element: Atomic # 1 Polarization: 38.99 SS G_CDS: 0.86 Total: 39.85 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: 6.88 Total: 15.64 kcal Atomic # 7 Polarization: -69.96 SS G_CDS: -1.18 Total: -71.14 kcal Atomic # 8 Polarization: -86.84 SS G_CDS: -1.06 Total: -87.90 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.08 kcal Total: -68.99 7.54 -61.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120637436.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.785 kcal (2) G-P(sol) polarization free energy of solvation -68.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds