Wall clock time and date at job start Wed Apr 1 2020 05:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47394 * 2 1 4 4 O 1.42894 * 109.47356 * 179.97438 * 3 2 1 5 5 C 1.35742 * 116.99855 * 180.02562 * 4 3 2 6 6 C 1.39028 * 119.87992 * 180.02562 * 5 4 3 7 7 C 1.37655 * 120.11590 * 179.71910 * 6 5 4 8 8 C 1.40008 * 119.88348 * 0.26032 * 7 6 5 9 9 C 1.46944 * 120.11843 * 180.02562 * 8 7 6 10 10 C 1.35138 * 120.00051 * 174.67387 * 9 8 7 11 11 C 1.41803 * 119.99696 * 185.40603 * 10 9 8 12 12 O 1.21776 * 120.00578 * 4.27450 * 11 10 9 13 13 N 1.34785 * 119.99622 * 184.27084 * 11 10 9 14 14 C 1.36740 * 119.99719 * 175.31618 * 13 11 10 15 15 H 1.08007 * 119.99919 * 222.10719 * 14 13 11 16 16 C 1.39095 * 120.00301 * 42.10809 * 14 13 11 17 17 N 1.31339 * 119.99500 * 16.39108 * 16 14 13 18 18 Si 1.86794 * 120.00126 * 196.38795 * 16 14 13 19 19 H 1.48503 * 109.47521 * 90.00038 * 18 16 14 20 20 H 1.48507 * 109.46832 * 210.00154 * 18 16 14 21 21 H 1.48504 * 109.47198 * 329.99723 * 18 16 14 22 22 C 1.46497 * 119.99899 * 355.31806 * 13 11 10 23 23 C 1.50708 * 109.47166 * 90.00124 * 22 13 11 24 24 O 1.20829 * 119.99576 * 359.97438 * 23 22 13 25 25 O 1.34226 * 120.00192 * 180.02562 * 23 22 13 26 26 C 1.45205 * 117.00175 * 179.97438 * 25 23 22 27 27 C 1.40010 * 119.76590 * 359.97438 * 8 7 6 28 28 C 1.37658 * 119.88108 * 0.02562 * 27 8 7 29 29 H 1.09003 * 109.47302 * 59.99940 * 1 2 3 30 30 H 1.09004 * 109.47324 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47094 * 299.99698 * 1 2 3 32 32 H 1.09005 * 109.46659 * 239.99806 * 2 1 3 33 33 H 1.09005 * 109.46815 * 120.00245 * 2 1 3 34 34 H 1.09005 * 109.47089 * 59.99518 * 3 2 1 35 35 H 1.09003 * 109.46945 * 300.00279 * 3 2 1 36 36 H 1.07997 * 119.94714 * 359.97438 * 6 5 4 37 37 H 1.08008 * 120.06195 * 180.27110 * 7 6 5 38 38 H 1.08001 * 120.00028 * 354.66937 * 9 8 7 39 39 H 1.07997 * 119.99672 * 5.40699 * 10 9 8 40 40 H 0.97001 * 119.99780 * 184.90078 * 17 16 14 41 41 H 1.09000 * 109.47120 * 209.99723 * 22 13 11 42 42 H 1.08993 * 109.47320 * 330.00315 * 22 13 11 43 43 H 1.08997 * 109.47019 * 179.97438 * 26 25 23 44 44 H 1.08993 * 109.46689 * 299.99446 * 26 25 23 45 45 H 1.09007 * 109.46747 * 59.99615 * 26 25 23 46 46 H 1.07996 * 120.06154 * 179.97438 * 27 8 7 47 47 H 1.08000 * 119.93914 * 180.02562 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0852 2.6519 0.0012 6 6 5.4737 2.7218 0.0013 7 6 6.1037 3.9457 -0.0039 8 6 5.3436 5.1215 -0.0038 9 6 6.0107 6.4308 -0.0099 10 6 5.2788 7.5616 -0.1184 11 6 5.9271 8.8168 -0.2397 12 8 7.1408 8.8697 -0.3246 13 7 5.2000 9.9515 -0.2613 14 6 5.8284 11.1659 -0.2816 15 1 5.4590 11.9754 0.3306 16 6 6.9432 11.3586 -1.0908 17 7 7.2048 10.5126 -2.0607 18 14 8.0682 12.8207 -0.7979 19 1 9.1377 12.4387 0.1590 20 1 8.6813 13.2390 -2.0843 21 1 7.2802 13.9470 -0.2358 22 6 3.7366 9.8838 -0.2628 23 6 3.2321 9.8859 1.1573 24 8 4.0148 9.9381 2.0763 25 8 1.9134 9.8287 1.4012 26 6 1.4996 9.8339 2.7930 27 6 3.9456 5.0454 0.0011 28 6 3.3257 3.8163 0.0063 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 6.0592 1.8143 0.0013 37 1 7.1825 3.9990 -0.0083 38 1 7.0860 6.4893 0.0724 39 1 4.2001 7.5092 -0.1126 40 1 8.0193 10.6059 -2.5791 41 1 3.3335 10.7468 -0.7928 42 1 3.4157 8.9690 -0.7610 43 1 0.4121 9.7847 2.8488 44 1 1.9293 8.9718 3.3029 45 1 1.8466 10.7497 3.2718 46 1 3.3546 5.9493 0.0017 47 1 2.2473 3.7566 0.0097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172359837.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:06 Heat of formation + Delta-G solvation = -94.542962 kcal Electronic energy + Delta-G solvation = -29871.845929 eV Core-core repulsion = 25600.773613 eV Total energy + Delta-G solvation = -4271.072316 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.20639 -40.02916 -38.52170 -37.68989 -35.99720 -34.48837 -34.13347 -32.92868 -31.81007 -31.05528 -28.85368 -28.55549 -26.83915 -26.40185 -25.02171 -23.37266 -22.83333 -21.48547 -21.02394 -20.42280 -18.38517 -18.28088 -17.31504 -17.13082 -16.55333 -16.53437 -16.05601 -15.71295 -15.45182 -15.25168 -14.68373 -14.43936 -14.39513 -13.99886 -13.90821 -13.49210 -13.36766 -13.07931 -12.88251 -12.81144 -12.57586 -12.52880 -12.42115 -11.90695 -11.78497 -11.68585 -11.56879 -11.52021 -11.32990 -11.02278 -10.95147 -10.88355 -10.67737 -10.56143 -10.46880 -10.22790 -10.02621 -9.32716 -9.01407 -8.91355 -8.14859 -7.51553 -7.23932 -6.11422 -3.89432 0.96480 1.39841 2.50229 2.74054 3.00357 3.06744 3.33552 3.40054 3.42226 3.94241 4.28761 4.49584 4.50453 4.77325 4.80719 4.83410 4.85085 4.93553 5.04372 5.04763 5.14835 5.24510 5.24919 5.28843 5.32368 5.35381 5.40795 5.43565 5.54706 5.55650 5.65419 5.66489 5.69649 5.75377 5.81650 6.02179 6.04840 6.22731 6.26324 6.37455 6.51872 6.75051 6.77189 7.00049 7.10623 7.34843 7.58409 8.17313 8.31030 8.95318 9.09175 9.55328 10.21339 10.93237 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012294 B = 0.002574 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.066578 B =10875.882793 C =12637.321136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.058 3.942 4 O -0.318 6.318 5 C 0.121 3.879 6 C -0.151 4.151 7 C -0.068 4.068 8 C -0.080 4.080 9 C -0.072 4.072 10 C -0.169 4.169 11 C 0.496 3.504 12 O -0.518 6.518 13 N -0.430 5.430 14 C -0.338 4.338 15 H 0.080 0.920 16 C 0.065 3.935 17 N -0.814 5.814 18 Si 0.913 3.087 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.273 1.273 22 C 0.116 3.884 23 C 0.431 3.569 24 O -0.487 6.487 25 O -0.370 6.370 26 C 0.035 3.965 27 C -0.074 4.074 28 C -0.206 4.206 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.105 0.895 40 H 0.266 0.734 41 H 0.115 0.885 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.127 0.873 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.726 -15.922 3.316 21.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.018 4.018 4 O -0.232 6.232 5 C 0.076 3.924 6 C -0.169 4.169 7 C -0.087 4.087 8 C -0.081 4.081 9 C -0.093 4.093 10 C -0.190 4.190 11 C 0.288 3.712 12 O -0.396 6.396 13 N -0.151 5.151 14 C -0.465 4.465 15 H 0.098 0.902 16 C -0.146 4.146 17 N -0.447 5.447 18 Si 0.740 3.260 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.011 4.011 23 C 0.270 3.730 24 O -0.371 6.371 25 O -0.287 6.287 26 C -0.059 4.059 27 C -0.092 4.092 28 C -0.225 4.225 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.147 0.853 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.123 0.877 40 H 0.076 0.924 41 H 0.133 0.867 42 H 0.118 0.882 43 H 0.112 0.888 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.145 0.855 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.685 -16.052 3.375 21.362 hybrid contribution 0.149 0.869 0.432 0.981 sum -13.536 -15.183 3.807 20.694 Atomic orbital electron populations 1.21695 0.94269 1.02487 1.02307 1.21482 0.96025 0.94939 1.03653 1.22863 0.78702 0.98663 1.01529 1.85981 1.21116 1.27342 1.88739 1.19101 0.92256 0.83850 0.97233 1.20305 0.91147 0.98544 1.06949 1.21182 0.99997 0.90615 0.96857 1.19108 0.92870 0.93498 1.02606 1.22063 1.00064 0.89563 0.97644 1.22433 0.99264 0.94796 1.02530 1.16620 0.87590 0.83539 0.83452 1.90672 1.13499 1.86424 1.49027 1.42989 1.00229 1.06513 1.65390 1.19057 1.13967 0.89357 1.24076 0.90209 1.25212 0.98780 0.97533 0.93107 1.69881 1.23730 1.35585 1.15508 0.86182 0.80924 0.81320 0.77575 1.20330 1.21198 1.19783 1.21143 0.86775 1.05043 0.88177 1.25452 0.79914 0.72726 0.94877 1.90672 1.56509 1.43426 1.46521 1.86536 1.27347 1.84820 1.30013 1.23128 1.00199 1.02246 0.80314 1.21209 0.94011 0.97099 0.96874 1.21109 0.99775 0.92234 1.09345 0.92298 0.91767 0.92329 0.90852 0.90886 0.92050 0.91980 0.85276 0.84860 0.85058 0.87703 0.92383 0.86743 0.88231 0.88766 0.92378 0.92302 0.85489 0.85622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.91 37.16 0.37 -0.39 16 2 C -0.12 -0.82 6.30 -26.73 -0.17 -0.99 16 3 C 0.06 0.49 4.73 37.16 0.18 0.66 16 4 O -0.32 -3.71 10.13 -18.93 -0.19 -3.90 16 5 C 0.12 1.55 6.70 -39.00 -0.26 1.29 16 6 C -0.15 -1.93 9.97 -39.50 -0.39 -2.32 16 7 C -0.07 -0.94 9.79 -39.13 -0.38 -1.33 16 8 C -0.08 -1.27 5.87 -105.05 -0.62 -1.89 16 9 C -0.07 -1.38 9.40 -37.16 -0.35 -1.73 16 10 C -0.17 -3.51 8.43 -39.32 -0.33 -3.85 16 11 C 0.50 12.93 6.82 -14.89 -0.10 12.83 16 12 O -0.52 -15.57 13.32 5.12 0.07 -15.51 16 13 N -0.43 -10.85 2.00 -119.29 -0.24 -11.09 16 14 C -0.34 -9.35 9.27 -15.04 -0.14 -9.49 16 15 H 0.08 2.17 7.89 -52.48 -0.41 1.76 16 16 C 0.07 1.84 4.46 -17.44 -0.08 1.76 16 17 N -0.81 -23.96 11.20 55.50 0.62 -23.34 16 18 Si 0.91 21.99 29.59 -169.99 -5.03 16.96 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 C 0.12 2.23 5.58 -5.19 -0.03 2.20 16 23 C 0.43 8.13 8.00 36.01 0.29 8.42 16 24 O -0.49 -11.03 16.18 -18.75 -0.30 -11.33 16 25 O -0.37 -5.69 10.57 -39.25 -0.41 -6.10 16 26 C 0.04 0.43 10.56 101.05 1.07 1.50 16 27 C -0.07 -1.05 9.40 -39.13 -0.37 -1.41 16 28 C -0.21 -2.57 9.01 -39.50 -0.36 -2.92 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.48 7.64 -51.93 -0.40 0.08 16 35 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 36 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 38 H 0.13 2.64 7.48 -52.49 -0.39 2.25 16 39 H 0.11 1.85 4.19 -52.49 -0.22 1.63 16 40 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.11 2.01 8.04 -51.93 -0.42 1.59 16 42 H 0.10 1.62 6.24 -51.93 -0.32 1.29 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 45 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 46 H 0.13 1.67 6.18 -52.49 -0.32 1.35 16 47 H 0.13 1.25 6.27 -52.49 -0.33 0.93 16 LS Contribution 399.64 15.07 6.02 6.02 Total: -1.00 -35.92 399.64 -7.72 -43.64 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -6.58 Total: 2.30 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -1.68 Total: 2.34 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.38 Total: -34.43 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -0.84 Total: -36.85 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.92 -7.72 -43.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172359837.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.900 kcal (2) G-P(sol) polarization free energy of solvation -35.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds