Wall clock time and date at job start Wed Apr 1 2020 05:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47394 * 2 1 4 4 O 1.42894 * 109.47356 * 179.97438 * 3 2 1 5 5 C 1.35742 * 116.99855 * 180.02562 * 4 3 2 6 6 C 1.39028 * 119.87992 * 180.02562 * 5 4 3 7 7 C 1.37655 * 120.11590 * 179.71910 * 6 5 4 8 8 C 1.40008 * 119.88348 * 0.26032 * 7 6 5 9 9 C 1.46944 * 120.11843 * 180.02562 * 8 7 6 10 10 C 1.35138 * 120.00051 * 174.67387 * 9 8 7 11 11 C 1.41803 * 119.99696 * 185.40603 * 10 9 8 12 12 O 1.21776 * 120.00578 * 4.27450 * 11 10 9 13 13 N 1.34785 * 119.99622 * 184.27084 * 11 10 9 14 14 C 1.36740 * 119.99719 * 175.31618 * 13 11 10 15 15 H 1.08007 * 119.99919 * 222.10719 * 14 13 11 16 16 C 1.39095 * 120.00301 * 42.10809 * 14 13 11 17 17 N 1.31339 * 119.99500 * 16.39108 * 16 14 13 18 18 Si 1.86794 * 120.00126 * 196.38795 * 16 14 13 19 19 H 1.48503 * 109.47521 * 90.00038 * 18 16 14 20 20 H 1.48507 * 109.46832 * 210.00154 * 18 16 14 21 21 H 1.48504 * 109.47198 * 329.99723 * 18 16 14 22 22 C 1.46497 * 119.99899 * 355.31806 * 13 11 10 23 23 C 1.50708 * 109.47166 * 90.00124 * 22 13 11 24 24 O 1.20829 * 119.99576 * 359.97438 * 23 22 13 25 25 O 1.34226 * 120.00192 * 180.02562 * 23 22 13 26 26 C 1.45205 * 117.00175 * 179.97438 * 25 23 22 27 27 C 1.40010 * 119.76590 * 359.97438 * 8 7 6 28 28 C 1.37658 * 119.88108 * 0.02562 * 27 8 7 29 29 H 1.09003 * 109.47302 * 59.99940 * 1 2 3 30 30 H 1.09004 * 109.47324 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47094 * 299.99698 * 1 2 3 32 32 H 1.09005 * 109.46659 * 239.99806 * 2 1 3 33 33 H 1.09005 * 109.46815 * 120.00245 * 2 1 3 34 34 H 1.09005 * 109.47089 * 59.99518 * 3 2 1 35 35 H 1.09003 * 109.46945 * 300.00279 * 3 2 1 36 36 H 1.07997 * 119.94714 * 359.97438 * 6 5 4 37 37 H 1.08008 * 120.06195 * 180.27110 * 7 6 5 38 38 H 1.08001 * 120.00028 * 354.66937 * 9 8 7 39 39 H 1.07997 * 119.99672 * 5.40699 * 10 9 8 40 40 H 0.97001 * 119.99780 * 184.90078 * 17 16 14 41 41 H 1.09000 * 109.47120 * 209.99723 * 22 13 11 42 42 H 1.08993 * 109.47320 * 330.00315 * 22 13 11 43 43 H 1.08997 * 109.47019 * 179.97438 * 26 25 23 44 44 H 1.08993 * 109.46689 * 299.99446 * 26 25 23 45 45 H 1.09007 * 109.46747 * 59.99615 * 26 25 23 46 46 H 1.07996 * 120.06154 * 179.97438 * 27 8 7 47 47 H 1.08000 * 119.93914 * 180.02562 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0852 2.6519 0.0012 6 6 5.4737 2.7218 0.0013 7 6 6.1037 3.9457 -0.0039 8 6 5.3436 5.1215 -0.0038 9 6 6.0107 6.4308 -0.0099 10 6 5.2788 7.5616 -0.1184 11 6 5.9271 8.8168 -0.2397 12 8 7.1408 8.8697 -0.3246 13 7 5.2000 9.9515 -0.2613 14 6 5.8284 11.1659 -0.2816 15 1 5.4590 11.9754 0.3306 16 6 6.9432 11.3586 -1.0908 17 7 7.2048 10.5126 -2.0607 18 14 8.0682 12.8207 -0.7979 19 1 9.1377 12.4387 0.1590 20 1 8.6813 13.2390 -2.0843 21 1 7.2802 13.9470 -0.2358 22 6 3.7366 9.8838 -0.2628 23 6 3.2321 9.8859 1.1573 24 8 4.0148 9.9381 2.0763 25 8 1.9134 9.8287 1.4012 26 6 1.4996 9.8339 2.7930 27 6 3.9456 5.0454 0.0011 28 6 3.3257 3.8163 0.0063 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 6.0592 1.8143 0.0013 37 1 7.1825 3.9990 -0.0083 38 1 7.0860 6.4893 0.0724 39 1 4.2001 7.5092 -0.1126 40 1 8.0193 10.6059 -2.5791 41 1 3.3335 10.7468 -0.7928 42 1 3.4157 8.9690 -0.7610 43 1 0.4121 9.7847 2.8488 44 1 1.9293 8.9718 3.3029 45 1 1.8466 10.7497 3.2718 46 1 3.3546 5.9493 0.0017 47 1 2.2473 3.7566 0.0097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172359837.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:05 Heat of formation + Delta-G solvation = -115.469536 kcal Electronic energy + Delta-G solvation = -29872.753374 eV Core-core repulsion = 25600.773613 eV Total energy + Delta-G solvation = -4271.979760 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.57278 -41.14849 -40.22558 -38.77833 -37.45808 -36.12307 -35.10972 -34.39105 -33.60528 -32.09446 -30.13070 -30.00325 -27.86379 -27.53288 -26.65606 -24.67926 -23.87997 -22.60049 -22.08880 -21.81935 -20.02111 -19.30014 -18.89002 -18.65203 -18.09154 -17.40256 -17.23327 -17.12649 -16.91387 -16.70443 -16.09077 -15.85131 -15.40053 -15.14085 -15.05756 -14.93626 -14.55380 -14.45090 -14.19792 -14.18428 -13.62151 -13.46266 -13.44303 -13.26116 -13.01241 -12.93584 -12.86007 -12.82706 -12.66258 -12.49587 -12.39531 -12.08388 -12.06013 -11.73018 -11.64462 -11.60829 -11.57794 -10.92834 -10.66086 -10.15301 -10.04728 -9.26304 -8.75890 -8.18861 -6.01077 -0.31532 0.37276 1.12826 1.26185 1.38144 1.45943 1.50643 1.74347 2.18514 2.35874 2.77120 3.00944 3.16650 3.28841 3.68554 3.84742 3.87194 3.96966 3.97305 4.04460 4.13372 4.25028 4.27398 4.31419 4.34745 4.37525 4.38096 4.48313 4.53971 4.57451 4.63698 4.73156 4.76841 4.83094 5.01126 5.09606 5.14520 5.20353 5.23414 5.28430 5.37818 5.38508 5.42554 5.56455 5.72036 5.73867 6.17134 6.42011 6.83514 6.95126 7.13791 7.56734 8.27370 8.85514 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012294 B = 0.002574 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.066578 B =10875.882793 C =12637.321136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C 0.048 3.952 4 O -0.325 6.325 5 C 0.130 3.870 6 C -0.159 4.159 7 C -0.064 4.064 8 C -0.115 4.115 9 C -0.037 4.037 10 C -0.205 4.205 11 C 0.489 3.511 12 O -0.577 6.577 13 N -0.448 5.448 14 C -0.357 4.357 15 H 0.076 0.924 16 C 0.018 3.982 17 N -0.850 5.850 18 Si 0.969 3.031 19 H -0.293 1.293 20 H -0.276 1.276 21 H -0.255 1.255 22 C 0.111 3.889 23 C 0.444 3.556 24 O -0.531 6.531 25 O -0.358 6.358 26 C 0.028 3.972 27 C -0.069 4.069 28 C -0.206 4.206 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.110 0.890 39 H 0.137 0.863 40 H 0.260 0.740 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.139 0.861 44 H 0.057 0.943 45 H 0.052 0.948 46 H 0.137 0.863 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.870 -17.869 3.748 25.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.027 4.027 4 O -0.239 6.239 5 C 0.084 3.916 6 C -0.177 4.177 7 C -0.082 4.082 8 C -0.116 4.116 9 C -0.058 4.058 10 C -0.225 4.225 11 C 0.283 3.717 12 O -0.460 6.460 13 N -0.168 5.168 14 C -0.484 4.484 15 H 0.093 0.907 16 C -0.190 4.190 17 N -0.485 5.485 18 Si 0.794 3.206 19 H -0.220 1.220 20 H -0.202 1.202 21 H -0.178 1.178 22 C -0.014 4.014 23 C 0.286 3.714 24 O -0.420 6.420 25 O -0.274 6.274 26 C -0.065 4.065 27 C -0.087 4.087 28 C -0.224 4.224 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.166 0.834 37 H 0.161 0.839 38 H 0.128 0.872 39 H 0.155 0.845 40 H 0.070 0.930 41 H 0.148 0.852 42 H 0.150 0.850 43 H 0.157 0.843 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.155 0.845 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -16.920 -17.993 3.805 24.991 hybrid contribution 0.932 1.130 0.410 1.521 sum -15.988 -16.863 4.215 23.617 Atomic orbital electron populations 1.21690 0.92907 1.03196 1.02709 1.21497 0.97081 0.93782 1.03492 1.23185 0.76887 1.00121 1.02480 1.86000 1.23091 1.26705 1.88132 1.19317 0.92487 0.84536 0.95242 1.20527 0.91699 0.98736 1.06736 1.21343 1.00636 0.90509 0.95700 1.19003 0.93950 0.92186 1.06442 1.22178 0.99166 0.91069 0.93401 1.22193 1.00729 0.92744 1.06843 1.17424 0.87299 0.85336 0.81688 1.90616 1.15985 1.87583 1.51807 1.43093 1.02739 1.05599 1.65383 1.19200 1.15034 0.90241 1.23938 0.90674 1.26015 1.00124 0.99885 0.92959 1.69976 1.23934 1.37777 1.16782 0.85323 0.78797 0.79073 0.77388 1.22019 1.20169 1.17830 1.21346 0.83474 1.07422 0.89201 1.25103 0.80739 0.71590 0.93997 1.90665 1.57890 1.45746 1.47649 1.86505 1.24795 1.83908 1.32203 1.23514 1.02814 1.02012 0.78209 1.21364 0.93241 0.98322 0.95726 1.21361 1.01263 0.91259 1.08566 0.91916 0.90983 0.91899 0.91078 0.91063 0.91008 0.91003 0.83380 0.83919 0.87230 0.84526 0.93035 0.85174 0.85012 0.84288 0.92421 0.92870 0.84528 0.82769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 71.98 0.71 -0.34 16 2 C -0.12 -1.27 6.30 30.59 0.19 -1.08 16 3 C 0.05 0.65 4.73 71.98 0.34 0.99 16 4 O -0.33 -6.58 10.13 -90.66 -0.92 -7.50 16 5 C 0.13 2.94 6.70 22.65 0.15 3.10 16 6 C -0.16 -3.68 9.97 22.32 0.22 -3.46 16 7 C -0.06 -1.68 9.79 22.56 0.22 -1.46 16 8 C -0.12 -3.52 5.87 -20.14 -0.12 -3.64 16 9 C -0.04 -1.44 9.40 23.84 0.22 -1.21 16 10 C -0.20 -8.62 8.43 22.44 0.19 -8.43 16 11 C 0.49 26.48 6.82 85.12 0.58 27.06 16 12 O -0.58 -36.69 13.32 -4.59 -0.06 -36.75 16 13 N -0.45 -23.19 2.00 -649.49 -1.30 -24.49 16 14 C -0.36 -20.39 9.27 84.13 0.78 -19.61 16 15 H 0.08 4.22 7.89 -2.91 -0.02 4.20 16 16 C 0.02 1.03 4.46 84.97 0.38 1.41 16 17 N -0.85 -52.29 11.20 21.69 0.24 -52.05 16 18 Si 0.97 46.70 29.59 68.60 2.03 48.73 16 19 H -0.29 -14.74 7.11 99.48 0.71 -14.04 16 20 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 21 H -0.25 -11.33 7.11 99.48 0.71 -10.62 16 22 C 0.11 4.22 5.58 85.64 0.48 4.70 16 23 C 0.44 16.38 8.00 71.24 0.57 16.95 16 24 O -0.53 -24.27 16.18 21.95 0.36 -23.91 16 25 O -0.36 -10.15 10.57 -51.38 -0.54 -10.70 16 26 C 0.03 0.60 10.56 113.37 1.20 1.80 16 27 C -0.07 -1.77 9.40 22.56 0.21 -1.56 16 28 C -0.21 -4.44 9.01 22.32 0.20 -4.24 16 29 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.06 0.40 8.14 -2.39 -0.02 0.39 16 32 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.07 0.85 7.64 -2.38 -0.02 0.83 16 35 H 0.07 0.86 7.66 -2.39 -0.02 0.84 16 36 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 37 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 38 H 0.11 4.66 7.48 -2.91 -0.02 4.64 16 39 H 0.14 4.68 4.19 -2.91 -0.01 4.66 16 40 H 0.26 15.48 8.31 -92.71 -0.77 14.70 16 41 H 0.13 4.47 8.04 -2.39 -0.02 4.45 16 42 H 0.13 4.07 6.24 -2.39 -0.01 4.05 16 43 H 0.14 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 45 H 0.05 1.23 8.13 -2.38 -0.02 1.21 16 46 H 0.14 3.21 6.18 -2.91 -0.02 3.19 16 47 H 0.15 2.39 6.27 -2.91 -0.02 2.37 16 Total: -1.00 -82.68 399.64 7.32 -75.36 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 0.98 Total: 20.36 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 6.53 Total: 10.96 kcal Atomic # 7 Polarization: -75.48 SS G_CDS: -1.06 Total: -76.54 kcal Atomic # 8 Polarization: -77.70 SS G_CDS: -1.17 Total: -78.86 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -82.68 7.32 -75.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172359837.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.110 kcal (2) G-P(sol) polarization free energy of solvation -82.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds