Wall clock time and date at job start Wed Apr 1 2020 04:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34225 * 116.99691 * 2 1 4 4 O 1.20823 * 120.00736 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99556 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.47206 * 179.97438 * 5 3 2 7 7 C 1.36866 * 120.00059 * 270.00341 * 6 5 3 8 8 H 1.08005 * 120.00125 * 138.71422 * 7 6 5 9 9 C 1.39047 * 120.00241 * 318.71532 * 7 6 5 10 10 N 1.31357 * 120.00411 * 163.79834 * 9 7 6 11 11 Si 1.86799 * 119.99831 * 343.79729 * 9 7 6 12 12 H 1.48496 * 109.47341 * 92.56713 * 11 9 7 13 13 H 1.48496 * 109.47242 * 212.57476 * 11 9 7 14 14 H 1.48504 * 109.46872 * 332.56874 * 11 9 7 15 15 C 1.34773 * 119.99757 * 89.99730 * 6 5 3 16 16 O 1.21589 * 120.00345 * 4.29324 * 15 6 5 17 17 C 1.47738 * 120.00129 * 184.28695 * 15 6 5 18 18 C 1.39680 * 120.12418 * 325.90732 * 17 15 6 19 19 C 1.37946 * 119.95927 * 180.02562 * 18 17 15 20 20 C 1.38305 * 120.21233 * 359.73851 * 19 18 17 21 21 C 1.38830 * 120.25138 * 0.51884 * 20 19 18 22 22 O 1.35908 * 119.97917 * 179.76797 * 21 20 19 23 23 C 1.42898 * 117.00229 * 359.71253 * 22 21 20 24 24 C 1.50700 * 109.46947 * 180.02562 * 23 22 21 25 25 C 1.31004 * 119.99589 * 127.29290 * 24 23 22 26 26 C 1.50699 * 119.99926 * 175.52712 * 25 24 23 27 27 C 1.50699 * 120.00128 * 355.51917 * 25 24 23 28 28 C 1.38474 * 120.03467 * 359.47737 * 21 20 19 29 29 H 1.09002 * 109.47148 * 300.00541 * 1 2 3 30 30 H 1.08999 * 109.46823 * 60.00152 * 1 2 3 31 31 H 1.08997 * 109.47225 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47296 * 60.00031 * 5 3 2 33 33 H 1.08993 * 109.47249 * 299.99598 * 5 3 2 34 34 H 0.97004 * 120.00619 * 180.02562 * 10 9 7 35 35 H 1.07995 * 120.01918 * 359.97438 * 18 17 15 36 36 H 1.07995 * 119.89087 * 179.97438 * 19 18 17 37 37 H 1.08001 * 119.87091 * 180.25265 * 20 19 18 38 38 H 1.09003 * 109.46592 * 60.01156 * 23 22 21 39 39 H 1.08991 * 109.47425 * 300.00965 * 23 22 21 40 40 H 1.07998 * 120.00319 * 307.56638 * 24 23 22 41 41 H 1.08999 * 109.47238 * 359.97438 * 26 25 24 42 42 H 1.08998 * 109.47582 * 119.99346 * 26 25 24 43 43 H 1.09001 * 109.46749 * 239.99688 * 26 25 24 44 44 H 1.09002 * 109.47139 * 64.21747 * 27 25 24 45 45 H 1.08993 * 109.47392 * 184.22089 * 27 25 24 46 46 H 1.09007 * 109.47130 * 304.22108 * 27 25 24 47 47 H 1.08001 * 120.10477 * 180.23431 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9818 2.6797 -0.0002 7 6 4.1763 3.3352 -1.1858 8 1 3.8337 4.3528 -1.3028 9 6 4.8149 2.6912 -2.2397 10 7 4.7261 3.1768 -3.4570 11 14 5.7993 1.1352 -1.9246 12 1 4.9286 -0.0507 -2.1257 13 1 6.9445 1.0743 -2.8680 14 1 6.3076 1.1452 -0.5292 15 6 4.1723 3.3266 1.1667 16 8 4.0757 2.7245 2.2186 17 6 4.4986 4.7675 1.1678 18 6 5.2778 5.3106 0.1436 19 6 5.5809 6.6563 0.1482 20 6 5.1112 7.4720 1.1616 21 6 4.3405 6.9405 2.1867 22 8 3.8857 7.7463 3.1822 23 6 4.2441 9.1279 3.1134 24 6 3.6554 9.8588 4.2925 25 6 4.4239 10.5937 5.0577 26 6 3.8202 11.4045 6.1754 27 6 5.9117 10.6282 4.8205 28 6 4.0299 5.5911 2.1923 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.9564 0.7805 -0.8892 33 1 3.9557 0.7810 0.8908 34 1 5.1713 2.7274 -4.1923 35 1 5.6434 4.6771 -0.6510 36 1 6.1838 7.0750 -0.6440 37 1 5.3484 8.5256 1.1576 38 1 3.8577 9.5578 2.1893 39 1 5.3297 9.2231 3.1324 40 1 2.6009 9.7733 4.5093 41 1 2.7408 11.2539 6.1915 42 1 4.2460 11.0856 7.1267 43 1 4.0370 12.4608 6.0161 44 1 6.1138 11.0677 3.8437 45 1 6.3894 11.2283 5.5948 46 1 6.3082 9.6132 4.8512 47 1 3.4273 5.1772 2.9872 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173080024.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:27 Heat of formation + Delta-G solvation = -93.405648 kcal Electronic energy + Delta-G solvation = -30283.668149 eV Core-core repulsion = 26012.645150 eV Total energy + Delta-G solvation = -4271.022999 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.21474 -39.77670 -38.81637 -37.17254 -36.11689 -35.86907 -35.00855 -32.16104 -30.81600 -30.48446 -29.05059 -28.44360 -27.99471 -26.56366 -25.32439 -24.52708 -22.56581 -21.79944 -20.85413 -19.43695 -18.37313 -18.14544 -17.42061 -17.03869 -16.29468 -16.11226 -15.87963 -15.75718 -15.65941 -15.31048 -14.88551 -14.37446 -14.29655 -14.13884 -13.93422 -13.71895 -13.28021 -13.19732 -12.97489 -12.75936 -12.69685 -12.59970 -12.41548 -12.16704 -12.08843 -11.90587 -11.79855 -11.61957 -11.29496 -11.15583 -11.10908 -10.69818 -10.56426 -10.44132 -10.36012 -10.13905 -9.90519 -9.42013 -9.07713 -8.86371 -8.44089 -8.05982 -7.67011 -6.60739 -4.27049 1.52312 1.77145 2.01107 2.81225 2.91032 2.96444 3.12327 3.15407 3.51155 3.67830 3.94236 4.19071 4.43288 4.59538 4.65074 4.82912 5.02658 5.07632 5.12709 5.22445 5.27537 5.34003 5.34965 5.38037 5.42095 5.43441 5.48130 5.56736 5.60532 5.68973 5.69550 5.76732 5.77128 5.88432 5.96054 6.00820 6.18058 6.35930 6.44549 6.59363 6.70221 6.81305 7.01555 7.05545 7.14332 7.28677 7.78135 7.85403 8.12183 8.35555 8.72606 9.07836 9.39198 10.47064 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013823 B = 0.002710 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.142703 B =10328.361625 C =11621.248425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.369 6.369 3 C 0.449 3.551 4 O -0.487 6.487 5 C 0.105 3.895 6 N -0.443 5.443 7 C -0.343 4.343 8 H 0.116 0.884 9 C 0.065 3.935 10 N -0.850 5.850 11 Si 0.862 3.138 12 H -0.267 1.267 13 H -0.279 1.279 14 H -0.253 1.253 15 C 0.539 3.461 16 O -0.582 6.582 17 C -0.063 4.063 18 C -0.094 4.094 19 C -0.102 4.102 20 C -0.197 4.197 21 C 0.103 3.897 22 O -0.314 6.314 23 C 0.088 3.912 24 C -0.164 4.164 25 C -0.116 4.116 26 C -0.117 4.117 27 C -0.126 4.126 28 C -0.105 4.105 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.279 0.721 35 H 0.167 0.833 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.119 0.881 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.652 8.454 9.077 12.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.286 6.286 3 C 0.289 3.711 4 O -0.372 6.372 5 C -0.020 4.020 6 N -0.163 5.163 7 C -0.470 4.470 8 H 0.133 0.867 9 C -0.144 4.144 10 N -0.484 5.484 11 Si 0.689 3.311 12 H -0.194 1.194 13 H -0.206 1.206 14 H -0.177 1.177 15 C 0.330 3.670 16 O -0.467 6.467 17 C -0.066 4.066 18 C -0.113 4.113 19 C -0.120 4.120 20 C -0.216 4.216 21 C 0.059 3.941 22 O -0.229 6.229 23 C 0.013 3.987 24 C -0.182 4.182 25 C -0.116 4.116 26 C -0.173 4.173 27 C -0.183 4.183 28 C -0.125 4.125 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.124 0.876 33 H 0.134 0.866 34 H 0.089 0.911 35 H 0.184 0.816 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.136 0.864 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.090 0.910 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.299 8.401 9.527 12.705 hybrid contribution 0.120 -0.551 -0.461 0.728 sum 0.419 7.850 9.066 12.000 Atomic orbital electron populations 1.23146 0.77454 1.02873 1.02305 1.86517 1.22732 1.34418 1.84927 1.24670 0.92760 0.81271 0.72420 1.90632 1.66551 1.36206 1.43764 1.21430 0.87037 0.88327 1.05236 1.43201 1.58167 1.08387 1.06541 1.19267 1.38312 1.01277 0.88150 0.86654 1.25392 0.96146 0.98111 0.94721 1.69678 1.39488 1.40355 0.98880 0.87139 0.80859 0.82963 0.80185 1.19402 1.20555 1.17687 1.18186 0.78682 0.86991 0.83187 1.90654 1.55927 1.68428 1.31645 1.19510 0.98976 0.93129 0.94954 1.22240 0.96094 0.95281 0.97658 1.20937 0.99624 0.93884 0.97587 1.21253 1.03467 1.00045 0.96847 1.18659 0.96414 0.90322 0.88693 1.86079 1.72327 1.18965 1.45509 1.21766 0.99410 0.80011 0.97515 1.22410 1.00223 0.98964 0.96590 1.21665 0.95618 0.98270 0.96030 1.20859 1.00687 0.99156 0.96634 1.20914 0.92503 1.02702 1.02150 1.20326 1.02478 0.90016 0.99642 0.92305 0.92155 0.88676 0.87568 0.86627 0.91063 0.81617 0.85800 0.86234 0.91393 0.91444 0.86351 0.91814 0.91336 0.91440 0.91350 0.91792 0.90971 0.85175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.56 101.05 1.07 1.59 16 2 O -0.37 -6.86 10.57 -39.24 -0.41 -7.27 16 3 C 0.45 9.90 8.02 36.01 0.29 10.19 16 4 O -0.49 -12.09 16.18 -18.75 -0.30 -12.40 16 5 C 0.10 2.31 4.78 -5.19 -0.02 2.29 16 6 N -0.44 -10.73 1.62 -117.21 -0.19 -10.92 16 7 C -0.34 -8.62 6.61 -15.00 -0.10 -8.72 16 8 H 0.12 3.12 6.48 -52.48 -0.34 2.78 16 9 C 0.06 1.61 5.35 -17.45 -0.09 1.51 16 10 N -0.85 -22.08 13.95 55.50 0.77 -21.31 16 11 Si 0.86 18.59 24.89 -169.99 -4.23 14.36 16 12 H -0.27 -5.50 6.65 56.52 0.38 -5.13 16 13 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 14 H -0.25 -5.44 7.11 56.52 0.40 -5.04 16 15 C 0.54 13.11 7.38 -12.38 -0.09 13.02 16 16 O -0.58 -14.95 16.36 5.29 0.09 -14.86 16 17 C -0.06 -1.38 5.49 -104.99 -0.58 -1.96 16 18 C -0.09 -1.91 7.75 -39.15 -0.30 -2.22 16 19 C -0.10 -1.74 10.03 -39.66 -0.40 -2.14 16 20 C -0.20 -3.15 9.03 -39.34 -0.36 -3.50 16 21 C 0.10 1.84 6.68 -39.28 -0.26 1.58 16 22 O -0.31 -5.12 10.12 -19.45 -0.20 -5.32 16 23 C 0.09 1.07 4.98 36.01 0.18 1.25 16 24 C -0.16 -1.77 9.49 -36.03 -0.34 -2.11 16 25 C -0.12 -1.06 6.05 -101.07 -0.61 -1.67 16 26 C -0.12 -0.83 10.04 36.00 0.36 -0.47 16 27 C -0.13 -1.01 8.54 36.01 0.31 -0.70 16 28 C -0.10 -2.14 9.55 -39.00 -0.37 -2.52 16 29 H 0.06 0.84 8.13 -51.93 -0.42 0.41 16 30 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.11 2.29 3.22 -51.93 -0.17 2.12 16 33 H 0.12 2.37 7.37 -51.93 -0.38 1.99 16 34 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16 35 H 0.17 3.59 5.55 -52.49 -0.29 3.29 16 36 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.12 1.53 6.28 -52.49 -0.33 1.20 16 38 H 0.07 0.77 7.65 -51.93 -0.40 0.38 16 39 H 0.07 0.74 5.33 -51.93 -0.28 0.46 16 40 H 0.12 1.25 7.84 -52.49 -0.41 0.84 16 41 H 0.06 0.44 7.79 -51.93 -0.40 0.03 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.50 7.91 -51.93 -0.41 0.09 16 45 H 0.06 0.42 8.00 -51.93 -0.42 0.00 16 46 H 0.07 0.64 7.60 -51.93 -0.39 0.24 16 47 H 0.13 2.69 7.99 -52.49 -0.42 2.27 16 LS Contribution 390.94 15.07 5.89 5.89 Total: -1.00 -30.98 390.94 -6.25 -37.23 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -6.34 Total: 9.17 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -1.33 Total: 5.43 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: 0.58 Total: -32.22 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -0.83 Total: -39.85 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -4.23 Total: 14.36 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.98 -6.25 -37.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173080024.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.176 kcal (2) G-P(sol) polarization free energy of solvation -30.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds