Wall clock time and date at job start Wed Apr 1 2020 04:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34225 * 116.99691 * 2 1 4 4 O 1.20823 * 120.00736 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99556 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.47206 * 179.97438 * 5 3 2 7 7 C 1.36866 * 120.00059 * 270.00341 * 6 5 3 8 8 H 1.08005 * 120.00125 * 138.71422 * 7 6 5 9 9 C 1.39047 * 120.00241 * 318.71532 * 7 6 5 10 10 N 1.31357 * 120.00411 * 163.79834 * 9 7 6 11 11 Si 1.86799 * 119.99831 * 343.79729 * 9 7 6 12 12 H 1.48496 * 109.47341 * 92.56713 * 11 9 7 13 13 H 1.48496 * 109.47242 * 212.57476 * 11 9 7 14 14 H 1.48504 * 109.46872 * 332.56874 * 11 9 7 15 15 C 1.34773 * 119.99757 * 89.99730 * 6 5 3 16 16 O 1.21589 * 120.00345 * 4.29324 * 15 6 5 17 17 C 1.47738 * 120.00129 * 184.28695 * 15 6 5 18 18 C 1.39680 * 120.12418 * 325.90732 * 17 15 6 19 19 C 1.37946 * 119.95927 * 180.02562 * 18 17 15 20 20 C 1.38305 * 120.21233 * 359.73851 * 19 18 17 21 21 C 1.38830 * 120.25138 * 0.51884 * 20 19 18 22 22 O 1.35908 * 119.97917 * 179.76797 * 21 20 19 23 23 C 1.42898 * 117.00229 * 359.71253 * 22 21 20 24 24 C 1.50700 * 109.46947 * 180.02562 * 23 22 21 25 25 C 1.31004 * 119.99589 * 127.29290 * 24 23 22 26 26 C 1.50699 * 119.99926 * 175.52712 * 25 24 23 27 27 C 1.50699 * 120.00128 * 355.51917 * 25 24 23 28 28 C 1.38474 * 120.03467 * 359.47737 * 21 20 19 29 29 H 1.09002 * 109.47148 * 300.00541 * 1 2 3 30 30 H 1.08999 * 109.46823 * 60.00152 * 1 2 3 31 31 H 1.08997 * 109.47225 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47296 * 60.00031 * 5 3 2 33 33 H 1.08993 * 109.47249 * 299.99598 * 5 3 2 34 34 H 0.97004 * 120.00619 * 180.02562 * 10 9 7 35 35 H 1.07995 * 120.01918 * 359.97438 * 18 17 15 36 36 H 1.07995 * 119.89087 * 179.97438 * 19 18 17 37 37 H 1.08001 * 119.87091 * 180.25265 * 20 19 18 38 38 H 1.09003 * 109.46592 * 60.01156 * 23 22 21 39 39 H 1.08991 * 109.47425 * 300.00965 * 23 22 21 40 40 H 1.07998 * 120.00319 * 307.56638 * 24 23 22 41 41 H 1.08999 * 109.47238 * 359.97438 * 26 25 24 42 42 H 1.08998 * 109.47582 * 119.99346 * 26 25 24 43 43 H 1.09001 * 109.46749 * 239.99688 * 26 25 24 44 44 H 1.09002 * 109.47139 * 64.21747 * 27 25 24 45 45 H 1.08993 * 109.47392 * 184.22089 * 27 25 24 46 46 H 1.09007 * 109.47130 * 304.22108 * 27 25 24 47 47 H 1.08001 * 120.10477 * 180.23431 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9818 2.6797 -0.0002 7 6 4.1763 3.3352 -1.1858 8 1 3.8337 4.3528 -1.3028 9 6 4.8149 2.6912 -2.2397 10 7 4.7261 3.1768 -3.4570 11 14 5.7993 1.1352 -1.9246 12 1 4.9286 -0.0507 -2.1257 13 1 6.9445 1.0743 -2.8680 14 1 6.3076 1.1452 -0.5292 15 6 4.1723 3.3266 1.1667 16 8 4.0757 2.7245 2.2186 17 6 4.4986 4.7675 1.1678 18 6 5.2778 5.3106 0.1436 19 6 5.5809 6.6563 0.1482 20 6 5.1112 7.4720 1.1616 21 6 4.3405 6.9405 2.1867 22 8 3.8857 7.7463 3.1822 23 6 4.2441 9.1279 3.1134 24 6 3.6554 9.8588 4.2925 25 6 4.4239 10.5937 5.0577 26 6 3.8202 11.4045 6.1754 27 6 5.9117 10.6282 4.8205 28 6 4.0299 5.5911 2.1923 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.9564 0.7805 -0.8892 33 1 3.9557 0.7810 0.8908 34 1 5.1713 2.7274 -4.1923 35 1 5.6434 4.6771 -0.6510 36 1 6.1838 7.0750 -0.6440 37 1 5.3484 8.5256 1.1576 38 1 3.8577 9.5578 2.1893 39 1 5.3297 9.2231 3.1324 40 1 2.6009 9.7733 4.5093 41 1 2.7408 11.2539 6.1915 42 1 4.2460 11.0856 7.1267 43 1 4.0370 12.4608 6.0161 44 1 6.1138 11.0677 3.8437 45 1 6.3894 11.2283 5.5948 46 1 6.3082 9.6132 4.8512 47 1 3.4273 5.1772 2.9872 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173080024.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:26 Heat of formation + Delta-G solvation = -110.608599 kcal Electronic energy + Delta-G solvation = -30284.414124 eV Core-core repulsion = 26012.645150 eV Total energy + Delta-G solvation = -4271.768974 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.91081 -41.22920 -40.40393 -38.38566 -37.63229 -37.08322 -36.85416 -34.07931 -32.33233 -31.76484 -30.32823 -29.71864 -28.65025 -27.97085 -27.16534 -25.57875 -24.02411 -23.25023 -22.47380 -21.15492 -19.93944 -19.15391 -19.01659 -18.66917 -17.85365 -17.51287 -17.32087 -17.20979 -17.06609 -16.85049 -16.38879 -15.87072 -15.74766 -15.11549 -15.00144 -14.87361 -14.75310 -14.73006 -14.51923 -14.36907 -14.16425 -13.87175 -13.55181 -13.32622 -13.24206 -13.01957 -12.96112 -12.82742 -12.74769 -12.52588 -12.34766 -12.13861 -11.98658 -11.88173 -11.85726 -11.70762 -11.58923 -11.24103 -10.72386 -10.02257 -9.88661 -9.81276 -9.11760 -8.51247 -6.22378 -0.01095 0.53368 0.97805 1.07218 1.18823 1.32005 1.39460 1.46091 1.97393 2.13925 2.24258 2.59204 2.77686 3.04900 3.73465 3.80725 3.86906 3.88100 3.91704 3.98354 4.09107 4.20301 4.23292 4.26784 4.27921 4.28476 4.37566 4.48276 4.55714 4.61941 4.66992 4.68128 4.74194 4.91545 4.94045 4.96191 5.09276 5.15034 5.15762 5.24811 5.28267 5.53746 5.62270 5.64806 5.78063 5.88298 5.97312 6.13505 6.47940 6.66492 6.81593 7.16100 7.50450 8.59473 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013823 B = 0.002710 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.142703 B =10328.361625 C =11621.248425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.451 3.549 4 O -0.524 6.524 5 C 0.096 3.904 6 N -0.449 5.449 7 C -0.341 4.341 8 H 0.086 0.914 9 C 0.034 3.966 10 N -0.885 5.885 11 Si 0.909 3.091 12 H -0.247 1.247 13 H -0.272 1.272 14 H -0.255 1.255 15 C 0.529 3.471 16 O -0.607 6.607 17 C -0.091 4.091 18 C -0.108 4.108 19 C -0.092 4.092 20 C -0.179 4.179 21 C 0.110 3.890 22 O -0.329 6.329 23 C 0.081 3.919 24 C -0.194 4.194 25 C -0.100 4.100 26 C -0.120 4.120 27 C -0.131 4.131 28 C -0.126 4.126 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.143 0.857 32 H 0.115 0.885 33 H 0.130 0.870 34 H 0.285 0.715 35 H 0.147 0.853 36 H 0.157 0.843 37 H 0.162 0.838 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.113 0.887 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.064 0.936 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.599 9.403 9.486 13.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.293 3.707 4 O -0.412 6.412 5 C -0.029 4.029 6 N -0.169 5.169 7 C -0.469 4.469 8 H 0.104 0.896 9 C -0.172 4.172 10 N -0.520 5.520 11 Si 0.733 3.267 12 H -0.173 1.173 13 H -0.197 1.197 14 H -0.178 1.178 15 C 0.321 3.679 16 O -0.493 6.493 17 C -0.094 4.094 18 C -0.126 4.126 19 C -0.110 4.110 20 C -0.198 4.198 21 C 0.065 3.935 22 O -0.244 6.244 23 C 0.007 3.993 24 C -0.212 4.212 25 C -0.100 4.100 26 C -0.176 4.176 27 C -0.187 4.187 28 C -0.146 4.146 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.161 0.839 32 H 0.132 0.868 33 H 0.148 0.852 34 H 0.095 0.905 35 H 0.165 0.835 36 H 0.174 0.826 37 H 0.180 0.820 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.131 0.869 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.098 0.902 45 H 0.099 0.901 46 H 0.082 0.918 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.232 9.332 9.933 13.684 hybrid contribution -0.248 -0.712 -0.486 0.897 sum 0.984 8.620 9.447 12.826 Atomic orbital electron populations 1.23580 0.74762 1.05992 1.02219 1.86486 1.25223 1.32148 1.84046 1.24568 0.92791 0.81706 0.71604 1.90616 1.67286 1.37595 1.45691 1.21571 0.87646 0.87397 1.06244 1.43242 1.58322 1.09166 1.06159 1.18970 1.38707 1.00578 0.88605 0.89607 1.25873 0.96427 1.00812 0.94110 1.69740 1.40550 1.42071 0.99681 0.86376 0.79990 0.80347 0.79995 1.17252 1.19723 1.17849 1.18686 0.78141 0.88143 0.82922 1.90603 1.57199 1.69252 1.32235 1.19479 1.01018 0.92254 0.96629 1.22077 0.96854 0.96775 0.96922 1.21267 0.98950 0.92415 0.98399 1.21635 1.01257 1.01845 0.95043 1.18660 0.95872 0.89588 0.89366 1.86085 1.72336 1.21003 1.44979 1.22085 1.00609 0.77735 0.98826 1.22363 1.00374 1.00804 0.97686 1.22008 0.96223 0.96663 0.95149 1.20943 1.00666 0.99815 0.96206 1.20997 0.91585 1.02658 1.03489 1.20274 1.03467 0.91587 0.99286 0.92353 0.92410 0.83909 0.86768 0.85222 0.90508 0.83513 0.82573 0.82011 0.90366 0.89816 0.86884 0.91890 0.90440 0.89768 0.90205 0.90126 0.91765 0.86758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.56 113.37 1.20 1.95 16 2 O -0.36 -13.13 10.57 -51.36 -0.54 -13.67 16 3 C 0.45 20.13 8.02 71.24 0.57 20.71 16 4 O -0.52 -26.81 16.18 21.97 0.36 -26.45 16 5 C 0.10 4.27 4.78 85.63 0.41 4.68 16 6 N -0.45 -22.49 1.62 -643.00 -1.04 -23.53 16 7 C -0.34 -17.80 6.61 84.10 0.56 -17.24 16 8 H 0.09 4.91 6.48 -2.91 -0.02 4.89 16 9 C 0.03 1.69 5.35 84.96 0.45 2.14 16 10 N -0.89 -46.66 13.95 21.68 0.30 -46.36 16 11 Si 0.91 37.88 24.89 68.60 1.71 39.59 16 12 H -0.25 -9.45 6.65 99.48 0.66 -8.79 16 13 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 14 H -0.25 -10.63 7.11 99.48 0.71 -9.93 16 15 C 0.53 26.95 7.38 86.76 0.64 27.59 16 16 O -0.61 -32.50 16.36 -4.00 -0.07 -32.56 16 17 C -0.09 -4.19 5.49 -20.10 -0.11 -4.30 16 18 C -0.11 -4.48 7.75 22.55 0.17 -4.31 16 19 C -0.09 -3.03 10.03 22.22 0.22 -2.81 16 20 C -0.18 -5.33 9.03 22.43 0.20 -5.13 16 21 C 0.11 3.89 6.68 22.47 0.15 4.04 16 22 O -0.33 -10.55 10.12 -92.51 -0.94 -11.49 16 23 C 0.08 1.83 4.98 71.24 0.36 2.18 16 24 C -0.19 -3.94 9.49 25.64 0.24 -3.70 16 25 C -0.10 -1.62 6.05 -16.49 -0.10 -1.72 16 26 C -0.12 -1.43 10.04 71.24 0.72 -0.71 16 27 C -0.13 -1.73 8.54 71.24 0.61 -1.12 16 28 C -0.13 -5.38 9.55 22.64 0.22 -5.17 16 29 H 0.06 1.61 8.13 -2.39 -0.02 1.59 16 30 H 0.06 1.62 8.13 -2.39 -0.02 1.60 16 31 H 0.14 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.12 4.85 3.22 -2.39 -0.01 4.84 16 33 H 0.13 5.35 7.37 -2.39 -0.02 5.33 16 34 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 35 H 0.15 6.64 5.55 -2.91 -0.02 6.62 16 36 H 0.16 4.08 8.06 -2.91 -0.02 4.05 16 37 H 0.16 3.44 6.28 -2.91 -0.02 3.42 16 38 H 0.08 1.58 7.65 -2.39 -0.02 1.56 16 39 H 0.08 1.59 5.33 -2.39 -0.01 1.58 16 40 H 0.11 2.35 7.84 -2.91 -0.02 2.33 16 41 H 0.06 0.77 7.79 -2.39 -0.02 0.75 16 42 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.08 0.75 8.14 -2.39 -0.02 0.74 16 44 H 0.08 0.89 7.91 -2.39 -0.02 0.88 16 45 H 0.08 0.80 8.00 -2.39 -0.02 0.78 16 46 H 0.06 0.98 7.60 -2.38 -0.02 0.97 16 47 H 0.11 5.08 7.99 -2.91 -0.02 5.06 16 Total: -1.00 -70.23 390.94 7.24 -62.99 By element: Atomic # 1 Polarization: 33.44 SS G_CDS: 0.95 Total: 34.39 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: 6.51 Total: 17.09 kcal Atomic # 7 Polarization: -69.15 SS G_CDS: -0.74 Total: -69.88 kcal Atomic # 8 Polarization: -82.98 SS G_CDS: -1.19 Total: -84.17 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 1.71 Total: 39.59 kcal Total: -70.23 7.24 -62.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173080024.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.620 kcal (2) G-P(sol) polarization free energy of solvation -70.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds