Wall clock time and date at job start Wed Apr 1 2020 04:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46922 * 2 1 4 4 N 1.46505 * 109.47244 * 180.02562 * 3 2 1 5 5 C 1.36934 * 119.99788 * 274.33666 * 4 3 2 6 6 H 1.07999 * 120.00555 * 337.80509 * 5 4 3 7 7 C 1.38819 * 119.99951 * 157.80301 * 5 4 3 8 8 N 1.31625 * 119.99611 * 7.72716 * 7 5 4 9 9 Si 1.86795 * 120.00170 * 187.72587 * 7 5 4 10 10 H 1.48500 * 109.46868 * 90.00074 * 9 7 5 11 11 H 1.48496 * 109.47158 * 209.99849 * 9 7 5 12 12 H 1.48501 * 109.47230 * 330.00138 * 9 7 5 13 13 C 1.46499 * 119.99770 * 94.33299 * 4 3 2 14 14 C 1.50709 * 109.47054 * 270.00119 * 13 4 3 15 15 O 1.21279 * 120.00044 * 0.02562 * 14 13 4 16 16 N 1.34773 * 119.99593 * 180.02562 * 14 13 4 17 17 C 1.46501 * 119.99520 * 179.97438 * 16 14 13 18 18 C 1.53007 * 109.46785 * 180.02562 * 17 16 14 19 19 C 1.50709 * 109.46858 * 180.02562 * 18 17 16 20 20 N 1.27925 * 124.23836 * 90.02465 * 19 18 17 21 21 C 1.34661 * 117.84839 * 179.97438 * 20 19 18 22 22 C 1.40962 * 129.69132 * 179.97438 * 21 20 19 23 23 C 1.36181 * 120.42279 * 180.02562 * 22 21 20 24 24 C 1.38792 * 120.78296 * 359.97438 * 23 22 21 25 25 C 1.37653 * 120.06071 * 0.02562 * 24 23 22 26 26 C 1.39329 * 119.95851 * 0.02562 * 25 24 23 27 27 S 1.70645 * 124.23471 * 270.00067 * 19 18 17 28 28 H 1.09000 * 109.47567 * 59.99941 * 1 2 3 29 29 H 1.09003 * 109.46794 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46719 * 299.99806 * 1 2 3 31 31 H 1.09004 * 109.47374 * 240.00569 * 2 1 3 32 32 H 1.09000 * 109.47567 * 120.00059 * 2 1 3 33 33 H 1.09000 * 109.47102 * 60.00059 * 3 2 1 34 34 H 1.09000 * 109.47048 * 300.00377 * 3 2 1 35 35 H 0.96998 * 119.99312 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.46971 * 150.00376 * 13 4 3 37 37 H 1.08997 * 109.47320 * 30.00492 * 13 4 3 38 38 H 0.97002 * 120.00629 * 0.02562 * 16 14 13 39 39 H 1.08997 * 109.47434 * 60.00366 * 17 16 14 40 40 H 1.08992 * 109.47520 * 299.99910 * 17 16 14 41 41 H 1.08997 * 109.47181 * 60.00430 * 18 17 16 42 42 H 1.08997 * 109.47305 * 300.00426 * 18 17 16 43 43 H 1.07995 * 119.79067 * 0.02562 * 22 21 20 44 44 H 1.08007 * 119.60690 * 179.72689 * 23 22 21 45 45 H 1.07994 * 119.96661 * 179.97438 * 24 23 22 46 46 H 1.08002 * 120.02059 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1901 1.3528 1.1816 6 1 3.7106 1.6368 2.1067 7 6 5.5012 0.8966 1.1911 8 7 6.1361 0.6953 0.0558 9 14 6.3642 0.5685 2.8149 10 1 6.1330 -0.8406 3.2224 11 1 7.8217 0.8055 2.6575 12 1 5.8240 1.4798 3.8556 13 6 4.2369 1.5387 -1.2660 14 6 4.4879 0.1549 -1.8075 15 8 4.0937 -0.8160 -1.1968 16 7 5.1503 -0.0037 -2.9704 17 6 5.3948 -1.3490 -3.4965 18 6 6.1602 -1.2486 -4.8176 19 6 6.4111 -2.6325 -5.3591 20 7 5.6155 -3.2529 -6.1456 21 6 5.9683 -4.4872 -6.5520 22 6 5.2908 -5.3823 -7.4046 23 6 5.8274 -6.6004 -7.6925 24 6 7.0480 -6.9839 -7.1546 25 6 7.7320 -6.1303 -6.3189 26 6 7.1979 -4.8805 -6.0124 27 16 7.7926 -3.5679 -5.0003 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6765 1.9564 -0.8899 35 1 7.0523 0.3769 0.0625 36 1 5.1894 2.0412 -1.0976 37 1 3.6475 2.1086 -1.9843 38 1 5.4659 0.7727 -3.4588 39 1 4.4425 -1.8518 -3.6653 40 1 5.9841 -1.9186 -2.7780 41 1 7.1125 -0.7461 -4.6484 42 1 5.5714 -0.6788 -5.5363 43 1 4.3401 -5.1002 -7.8323 44 1 5.2948 -7.2776 -8.3438 45 1 7.4611 -7.9532 -7.3914 46 1 8.6816 -6.4295 -5.9004 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173238289.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:34 Heat of formation + Delta-G solvation = 41.349749 kcal Electronic energy + Delta-G solvation = -27380.800767 eV Core-core repulsion = 23590.666823 eV Total energy + Delta-G solvation = -3790.133944 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.54421 -38.37649 -37.36643 -35.75702 -34.25240 -32.80033 -31.49874 -31.37141 -30.47014 -28.97113 -26.99372 -25.43317 -24.70969 -23.44951 -22.45397 -21.80720 -20.77220 -20.08207 -19.28312 -18.67713 -16.89326 -16.87753 -15.89051 -15.72978 -15.52441 -15.17670 -14.94359 -14.61897 -14.52905 -14.15731 -14.05235 -13.65749 -13.26458 -12.87511 -12.84390 -12.72316 -12.61553 -12.38977 -12.18615 -11.98975 -11.46493 -11.43211 -11.24026 -11.07006 -11.00054 -10.91960 -10.72198 -10.49243 -10.33752 -10.22722 -9.96950 -9.80024 -9.75954 -9.50742 -8.83348 -8.71141 -8.33015 -8.18421 -7.97027 -6.74151 -5.76393 -3.14587 0.21433 0.88980 1.08260 1.58377 2.14452 3.42158 3.45034 3.48395 3.50406 3.62597 4.21217 4.36068 4.41559 4.60022 4.64695 4.85202 4.96878 5.02225 5.11332 5.13481 5.31430 5.43490 5.56328 5.59062 5.62651 5.87702 5.88091 5.92378 5.96357 6.09306 6.15968 6.20160 6.23463 6.33021 6.43460 6.50357 6.59728 6.66353 6.73624 6.95668 7.19774 7.36694 7.47064 7.47645 7.56107 7.79216 8.39793 8.72758 9.24840 9.79788 9.94265 10.33860 11.30756 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.013250 B = 0.002491 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.667778 B =11236.010613 C =12322.960925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C 0.152 3.848 4 N -0.579 5.579 5 C -0.238 4.238 6 H 0.073 0.927 7 C 0.006 3.994 8 N -0.910 5.910 9 Si 0.908 3.092 10 H -0.289 1.289 11 H -0.293 1.293 12 H -0.282 1.282 13 C 0.166 3.834 14 C 0.531 3.469 15 O -0.537 6.537 16 N -0.750 5.750 17 C 0.139 3.861 18 C -0.061 4.061 19 C 0.110 3.890 20 N -0.468 5.468 21 C 0.086 3.914 22 C -0.065 4.065 23 C -0.109 4.109 24 C -0.108 4.108 25 C -0.070 4.070 26 C -0.190 4.190 27 S 0.111 5.889 28 H 0.043 0.957 29 H 0.040 0.960 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.035 0.965 35 H 0.252 0.748 36 H 0.118 0.882 37 H 0.025 0.975 38 H 0.387 0.613 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.134 0.866 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.519 -8.603 -17.072 19.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C 0.025 3.975 4 N -0.298 5.298 5 C -0.367 4.367 6 H 0.091 0.909 7 C -0.190 4.190 8 N -0.557 5.557 9 Si 0.739 3.261 10 H -0.217 1.217 11 H -0.219 1.219 12 H -0.208 1.208 13 C 0.036 3.964 14 C 0.319 3.681 15 O -0.411 6.411 16 N -0.406 5.406 17 C 0.012 3.988 18 C -0.102 4.102 19 C -0.175 4.175 20 N -0.182 5.182 21 C -0.035 4.035 22 C -0.086 4.086 23 C -0.130 4.130 24 C -0.129 4.129 25 C -0.092 4.092 26 C -0.309 4.309 27 S 0.368 5.632 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.136 0.864 37 H 0.043 0.957 38 H 0.219 0.781 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.114 0.886 42 H 0.120 0.880 43 H 0.152 0.848 44 H 0.151 0.849 45 H 0.151 0.849 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.750 -8.812 -16.064 18.527 hybrid contribution 0.374 -0.852 0.056 0.932 sum 3.125 -9.664 -16.008 18.958 Atomic orbital electron populations 1.21787 0.98274 1.00162 1.00369 1.22161 0.92348 1.00478 1.03115 1.20917 0.84413 0.93962 0.98205 1.43788 0.99644 1.84045 1.02326 1.19235 0.95181 1.36044 0.86211 0.90910 1.24908 0.97891 0.99299 0.96920 1.69654 1.11434 1.50871 1.23729 0.86187 0.78291 0.78319 0.83275 1.21653 1.21941 1.20753 1.20733 0.98612 0.91156 0.85935 1.22109 0.74645 0.94372 0.77006 1.90494 1.51809 1.42139 1.56677 1.46160 1.62569 1.05970 1.25912 1.20881 0.98884 0.87596 0.91437 1.20653 1.03008 0.88243 0.98345 1.26589 0.93314 1.01191 0.96423 1.66206 1.31325 1.07175 1.13444 1.19233 0.92975 0.91162 1.00132 1.20406 0.99715 0.92317 0.96182 1.20723 0.96050 0.95986 1.00206 1.21118 0.95196 0.99503 0.97121 1.20355 0.99948 0.90819 0.98124 1.23976 1.00538 1.01143 1.05194 1.84149 1.24067 1.07568 1.47396 0.93815 0.94040 0.93675 0.91606 0.92352 0.94090 0.94665 0.93680 0.86409 0.95677 0.78052 0.92330 0.92259 0.88616 0.87988 0.84816 0.84851 0.84852 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.91 37.16 0.37 -2.11 16 2 C -0.14 -3.00 5.67 -26.73 -0.15 -3.15 16 3 C 0.15 3.25 5.72 -4.04 -0.02 3.23 16 4 N -0.58 -14.40 2.07 -174.60 -0.36 -14.76 16 5 C -0.24 -6.47 9.70 -15.06 -0.15 -6.62 16 6 H 0.07 1.96 7.84 -52.49 -0.41 1.55 16 7 C 0.01 0.17 5.41 -17.43 -0.09 0.07 16 8 N -0.91 -24.87 8.21 55.49 0.46 -24.42 16 9 Si 0.91 22.27 29.56 -169.99 -5.02 17.25 16 10 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 13 C 0.17 3.80 5.47 -5.19 -0.03 3.77 16 14 C 0.53 12.28 5.79 -10.98 -0.06 12.22 16 15 O -0.54 -14.70 13.88 5.56 0.08 -14.62 16 16 N -0.75 -13.63 5.56 -60.29 -0.33 -13.96 16 17 C 0.14 2.34 5.66 -4.04 -0.02 2.31 16 18 C -0.06 -0.77 5.89 -27.87 -0.16 -0.93 16 19 C 0.11 1.50 6.54 -13.90 -0.09 1.41 16 20 N -0.47 -6.95 10.57 -9.08 -0.10 -7.04 16 21 C 0.09 1.16 7.00 -84.96 -0.59 0.56 16 22 C -0.07 -0.70 10.05 -39.29 -0.39 -1.10 16 23 C -0.11 -0.89 9.94 -40.12 -0.40 -1.29 16 24 C -0.11 -0.86 10.04 -39.59 -0.40 -1.26 16 25 C -0.07 -0.68 10.07 -39.39 -0.40 -1.08 16 26 C -0.19 -2.36 6.56 -38.55 -0.25 -2.62 16 27 S 0.11 1.37 23.11 -107.50 -2.48 -1.11 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 1.55 6.38 -51.93 -0.33 1.22 16 32 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.04 0.85 8.08 -51.93 -0.42 0.43 16 34 H 0.03 0.68 7.84 -51.93 -0.41 0.27 16 35 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.12 2.88 6.24 -51.93 -0.32 2.56 16 37 H 0.03 0.50 7.86 -51.93 -0.41 0.09 16 38 H 0.39 5.76 8.47 -40.82 -0.35 5.41 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 44 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 45 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 46 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 392.07 15.07 5.91 5.91 Total: -1.00 -33.38 392.07 -11.57 -44.95 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -6.86 Total: 4.38 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -2.85 Total: 3.42 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: -0.34 Total: -60.18 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: 0.08 Total: -14.62 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.48 Total: -1.11 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.38 -11.57 -44.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173238289.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.297 kcal (2) G-P(sol) polarization free energy of solvation -33.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds