Wall clock time and date at job start Wed Apr 1 2020 04:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46922 * 2 1 4 4 N 1.46505 * 109.47244 * 180.02562 * 3 2 1 5 5 C 1.36934 * 119.99788 * 274.33666 * 4 3 2 6 6 H 1.07999 * 120.00555 * 337.80509 * 5 4 3 7 7 C 1.38819 * 119.99951 * 157.80301 * 5 4 3 8 8 N 1.31625 * 119.99611 * 7.72716 * 7 5 4 9 9 Si 1.86795 * 120.00170 * 187.72587 * 7 5 4 10 10 H 1.48500 * 109.46868 * 90.00074 * 9 7 5 11 11 H 1.48496 * 109.47158 * 209.99849 * 9 7 5 12 12 H 1.48501 * 109.47230 * 330.00138 * 9 7 5 13 13 C 1.46499 * 119.99770 * 94.33299 * 4 3 2 14 14 C 1.50709 * 109.47054 * 270.00119 * 13 4 3 15 15 O 1.21279 * 120.00044 * 0.02562 * 14 13 4 16 16 N 1.34773 * 119.99593 * 180.02562 * 14 13 4 17 17 C 1.46501 * 119.99520 * 179.97438 * 16 14 13 18 18 C 1.53007 * 109.46785 * 180.02562 * 17 16 14 19 19 C 1.50709 * 109.46858 * 180.02562 * 18 17 16 20 20 N 1.27925 * 124.23836 * 90.02465 * 19 18 17 21 21 C 1.34661 * 117.84839 * 179.97438 * 20 19 18 22 22 C 1.40962 * 129.69132 * 179.97438 * 21 20 19 23 23 C 1.36181 * 120.42279 * 180.02562 * 22 21 20 24 24 C 1.38792 * 120.78296 * 359.97438 * 23 22 21 25 25 C 1.37653 * 120.06071 * 0.02562 * 24 23 22 26 26 C 1.39329 * 119.95851 * 0.02562 * 25 24 23 27 27 S 1.70645 * 124.23471 * 270.00067 * 19 18 17 28 28 H 1.09000 * 109.47567 * 59.99941 * 1 2 3 29 29 H 1.09003 * 109.46794 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46719 * 299.99806 * 1 2 3 31 31 H 1.09004 * 109.47374 * 240.00569 * 2 1 3 32 32 H 1.09000 * 109.47567 * 120.00059 * 2 1 3 33 33 H 1.09000 * 109.47102 * 60.00059 * 3 2 1 34 34 H 1.09000 * 109.47048 * 300.00377 * 3 2 1 35 35 H 0.96998 * 119.99312 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.46971 * 150.00376 * 13 4 3 37 37 H 1.08997 * 109.47320 * 30.00492 * 13 4 3 38 38 H 0.97002 * 120.00629 * 0.02562 * 16 14 13 39 39 H 1.08997 * 109.47434 * 60.00366 * 17 16 14 40 40 H 1.08992 * 109.47520 * 299.99910 * 17 16 14 41 41 H 1.08997 * 109.47181 * 60.00430 * 18 17 16 42 42 H 1.08997 * 109.47305 * 300.00426 * 18 17 16 43 43 H 1.07995 * 119.79067 * 0.02562 * 22 21 20 44 44 H 1.08007 * 119.60690 * 179.72689 * 23 22 21 45 45 H 1.07994 * 119.96661 * 179.97438 * 24 23 22 46 46 H 1.08002 * 120.02059 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1901 1.3528 1.1816 6 1 3.7106 1.6368 2.1067 7 6 5.5012 0.8966 1.1911 8 7 6.1361 0.6953 0.0558 9 14 6.3642 0.5685 2.8149 10 1 6.1330 -0.8406 3.2224 11 1 7.8217 0.8055 2.6575 12 1 5.8240 1.4798 3.8556 13 6 4.2369 1.5387 -1.2660 14 6 4.4879 0.1549 -1.8075 15 8 4.0937 -0.8160 -1.1968 16 7 5.1503 -0.0037 -2.9704 17 6 5.3948 -1.3490 -3.4965 18 6 6.1602 -1.2486 -4.8176 19 6 6.4111 -2.6325 -5.3591 20 7 5.6155 -3.2529 -6.1456 21 6 5.9683 -4.4872 -6.5520 22 6 5.2908 -5.3823 -7.4046 23 6 5.8274 -6.6004 -7.6925 24 6 7.0480 -6.9839 -7.1546 25 6 7.7320 -6.1303 -6.3189 26 6 7.1979 -4.8805 -6.0124 27 16 7.7926 -3.5679 -5.0003 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6765 1.9564 -0.8899 35 1 7.0523 0.3769 0.0625 36 1 5.1894 2.0412 -1.0976 37 1 3.6475 2.1086 -1.9843 38 1 5.4659 0.7727 -3.4588 39 1 4.4425 -1.8518 -3.6653 40 1 5.9841 -1.9186 -2.7780 41 1 7.1125 -0.7461 -4.6484 42 1 5.5714 -0.6788 -5.5363 43 1 4.3401 -5.1002 -7.8323 44 1 5.2948 -7.2776 -8.3438 45 1 7.4611 -7.9532 -7.3914 46 1 8.6816 -6.4295 -5.9004 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173238289.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:33 Heat of formation + Delta-G solvation = 21.007141 kcal Electronic energy + Delta-G solvation = -27381.682889 eV Core-core repulsion = 23590.666823 eV Total energy + Delta-G solvation = -3791.016066 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.41493 -40.12035 -38.31925 -37.46162 -35.79142 -34.60270 -32.82585 -32.30940 -32.11946 -30.07270 -28.60381 -27.23897 -25.85648 -24.50309 -23.69167 -23.18720 -21.85334 -21.73664 -20.97723 -19.58340 -18.81737 -17.73296 -17.41689 -17.16449 -16.84952 -16.44261 -16.07209 -15.98091 -15.83967 -15.69763 -15.43643 -14.92805 -14.72868 -14.42938 -14.35145 -14.14294 -13.76611 -13.46750 -13.40012 -13.23224 -12.96400 -12.90506 -12.78747 -12.53761 -12.48296 -12.38319 -12.19362 -12.06842 -11.88527 -11.81979 -11.71910 -11.24122 -11.19094 -10.76940 -10.71152 -10.14264 -9.68242 -9.63955 -9.18044 -8.68703 -7.82490 -5.20491 -0.67044 0.13010 0.17708 0.64096 1.25872 1.43367 1.49175 1.53251 2.45005 2.48179 2.66565 2.69829 3.00315 3.39766 3.57603 3.75409 3.84556 3.95040 4.01806 4.07106 4.26696 4.30760 4.31235 4.43574 4.45460 4.59230 4.67199 4.71214 4.81129 4.82471 4.88281 4.92221 4.97393 5.07864 5.12543 5.23497 5.23977 5.30957 5.38394 5.47947 5.49945 5.65785 5.75568 5.77672 5.96303 6.40715 6.51756 7.07421 7.26826 7.88352 8.13478 8.33469 9.20967 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.013250 B = 0.002491 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.667778 B =11236.010613 C =12322.960925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.149 3.851 4 N -0.595 5.595 5 C -0.249 4.249 6 H 0.069 0.931 7 C -0.040 4.040 8 N -0.916 5.916 9 Si 0.959 3.041 10 H -0.306 1.306 11 H -0.290 1.290 12 H -0.269 1.269 13 C 0.165 3.835 14 C 0.530 3.470 15 O -0.586 6.586 16 N -0.734 5.734 17 C 0.150 3.850 18 C -0.046 4.046 19 C 0.089 3.911 20 N -0.489 5.489 21 C 0.047 3.953 22 C -0.082 4.082 23 C -0.099 4.099 24 C -0.093 4.093 25 C -0.084 4.084 26 C -0.204 4.204 27 S 0.109 5.891 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.037 0.963 32 H 0.020 0.980 33 H 0.048 0.952 34 H 0.061 0.939 35 H 0.244 0.756 36 H 0.102 0.898 37 H 0.060 0.940 38 H 0.406 0.594 39 H 0.038 0.962 40 H 0.031 0.969 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.141 0.859 44 H 0.170 0.830 45 H 0.173 0.827 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.337 -9.408 -18.814 21.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.171 4.171 3 C 0.023 3.977 4 N -0.315 5.315 5 C -0.379 4.379 6 H 0.087 0.913 7 C -0.235 4.235 8 N -0.564 5.564 9 Si 0.789 3.211 10 H -0.235 1.235 11 H -0.217 1.217 12 H -0.194 1.194 13 C 0.035 3.965 14 C 0.318 3.682 15 O -0.464 6.464 16 N -0.390 5.390 17 C 0.023 3.977 18 C -0.087 4.087 19 C -0.196 4.196 20 N -0.203 5.203 21 C -0.073 4.073 22 C -0.103 4.103 23 C -0.119 4.119 24 C -0.114 4.114 25 C -0.106 4.106 26 C -0.323 4.323 27 S 0.366 5.634 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.039 0.961 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.120 0.880 37 H 0.078 0.922 38 H 0.242 0.758 39 H 0.056 0.944 40 H 0.049 0.951 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.158 0.842 44 H 0.188 0.812 45 H 0.191 0.809 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.574 -9.575 -17.853 20.422 hybrid contribution 0.395 -0.744 0.485 0.972 sum 2.969 -10.319 -17.369 20.420 Atomic orbital electron populations 1.21682 0.94444 1.01258 1.02129 1.21978 0.95616 0.99635 0.99848 1.21075 0.82743 0.94167 0.99719 1.44008 1.01077 1.84187 1.02252 1.19421 0.95466 1.35804 0.87165 0.91321 1.25506 0.98771 0.99935 0.99299 1.69806 1.10918 1.51205 1.24476 0.85383 0.77535 0.77102 0.81034 1.23480 1.21668 1.19430 1.20739 0.98399 0.91233 0.86145 1.22149 0.74481 0.93911 0.77665 1.90474 1.53938 1.43472 1.58511 1.45860 1.60987 1.07424 1.24714 1.20721 0.97965 0.86091 0.92928 1.20511 1.03556 0.88599 0.96009 1.26612 0.94086 1.01615 0.97239 1.66175 1.32039 1.08208 1.13863 1.19641 0.94277 0.91443 1.01937 1.20727 1.00261 0.93078 0.96207 1.21203 0.96038 0.95215 0.99469 1.21651 0.94446 1.00375 0.94918 1.20773 1.01056 0.90071 0.98718 1.24230 1.00574 1.02097 1.05403 1.83969 1.23659 1.08000 1.47778 0.91753 0.93360 0.92126 0.94388 0.96127 0.93406 0.92048 0.94580 0.88028 0.92228 0.75838 0.94393 0.95062 0.86613 0.86377 0.84154 0.81212 0.80942 0.83281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.36 9.91 71.98 0.71 -3.65 16 2 C -0.13 -5.61 5.67 30.60 0.17 -5.43 16 3 C 0.15 6.27 5.72 86.38 0.49 6.76 16 4 N -0.60 -29.78 2.07 -706.31 -1.46 -31.24 16 5 C -0.25 -13.73 9.70 84.04 0.81 -12.92 16 6 H 0.07 3.75 7.84 -2.91 -0.02 3.72 16 7 C -0.04 -2.26 5.41 84.86 0.46 -1.80 16 8 N -0.92 -51.12 8.21 21.65 0.18 -50.94 16 9 Si 0.96 46.60 29.56 68.60 2.03 48.63 16 10 H -0.31 -15.65 7.11 99.48 0.71 -14.95 16 11 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 13 C 0.16 7.54 5.47 85.64 0.47 8.00 16 14 C 0.53 24.97 5.79 87.66 0.51 25.48 16 15 O -0.59 -33.29 13.88 -3.03 -0.04 -33.33 16 16 N -0.73 -26.95 5.56 -463.06 -2.57 -29.52 16 17 C 0.15 5.23 5.66 86.38 0.49 5.72 16 18 C -0.05 -1.16 5.89 29.85 0.18 -0.98 16 19 C 0.09 2.51 6.54 88.68 0.58 3.09 16 20 N -0.49 -14.91 10.57 -182.51 -1.93 -16.84 16 21 C 0.05 1.27 7.00 39.78 0.28 1.55 16 22 C -0.08 -1.68 10.05 22.46 0.23 -1.45 16 23 C -0.10 -1.33 9.94 21.92 0.22 -1.11 16 24 C -0.09 -1.15 10.04 22.26 0.22 -0.93 16 25 C -0.08 -1.48 10.07 22.39 0.23 -1.25 16 26 C -0.20 -5.05 6.56 22.94 0.15 -4.90 16 27 S 0.11 2.77 23.11 -56.49 -1.31 1.46 16 28 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 31 H 0.04 1.83 6.38 -2.38 -0.02 1.81 16 32 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 34 H 0.06 2.25 7.84 -2.39 -0.02 2.23 16 35 H 0.24 13.64 8.31 -92.71 -0.77 12.87 16 36 H 0.10 5.00 6.24 -2.39 -0.01 4.98 16 37 H 0.06 2.28 7.86 -2.39 -0.02 2.26 16 38 H 0.41 11.78 8.47 -92.71 -0.79 10.99 16 39 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 43 H 0.14 2.53 8.06 -2.91 -0.02 2.50 16 44 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 45 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 46 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -76.11 392.07 1.30 -74.81 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.21 Total: 20.80 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 6.20 Total: 16.17 kcal Atomic # 7 Polarization: -122.75 SS G_CDS: -5.78 Total: -128.54 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: -0.04 Total: -33.33 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -1.31 Total: 1.46 kcal Total: -76.11 1.30 -74.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173238289.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.821 kcal (2) G-P(sol) polarization free energy of solvation -76.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds