Wall clock time and date at job start Wed Apr 1 2020 05:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.65570 * 2 1 4 4 C 1.51310 * 110.60514 * 237.07489 * 2 1 3 5 5 O 1.21225 * 125.40286 * 61.49830 * 4 2 1 6 6 N 1.33875 * 109.20639 * 241.47903 * 4 2 1 7 7 C 1.46500 * 122.76664 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47152 * 90.00000 * 7 6 4 9 9 H 1.09000 * 109.47509 * 59.99964 * 8 7 6 10 10 O 1.42907 * 109.46775 * 300.00006 * 8 7 6 11 11 C 1.52995 * 109.47240 * 180.02562 * 8 7 6 12 12 O 1.42896 * 109.47243 * 184.99800 * 11 8 7 13 13 C 1.35677 * 117.00200 * 179.97438 * 12 11 8 14 14 C 1.39314 * 119.81626 * 359.72125 * 13 12 11 15 15 C 1.36439 * 120.18344 * 179.76168 * 14 13 12 16 16 C 1.40833 * 119.81226 * 0.51572 * 15 14 13 17 17 C 1.41212 * 120.17954 * 179.71824 * 16 15 14 18 18 H 1.07997 * 119.99908 * 155.16363 * 17 16 15 19 19 C 1.39892 * 120.00201 * 335.16842 * 17 16 15 20 20 N 1.30884 * 119.99776 * 342.16153 * 19 17 16 21 21 Si 1.86793 * 120.00063 * 162.15395 * 19 17 16 22 22 H 1.48507 * 109.46972 * 94.66054 * 21 19 17 23 23 H 1.48504 * 109.47354 * 214.65616 * 21 19 17 24 24 H 1.48503 * 109.47419 * 334.66137 * 21 19 17 25 25 C 1.40829 * 119.63871 * 359.74359 * 16 15 14 26 26 C 1.36433 * 119.81599 * 359.97438 * 25 16 15 27 27 C 1.33884 * 114.47316 * 0.27034 * 6 4 2 28 28 O 1.21223 * 125.39337 * 179.71436 * 27 6 4 29 29 C 1.51315 * 109.20541 * 359.57036 * 27 6 4 30 30 H 1.08999 * 110.41373 * 118.81396 * 29 27 6 31 31 C 1.53000 * 110.93091 * 241.71757 * 29 27 6 32 32 H 1.09006 * 109.46869 * 181.48085 * 1 2 3 33 33 H 1.09000 * 109.47094 * 301.47273 * 1 2 3 34 34 H 1.08996 * 109.47639 * 61.47931 * 1 2 3 35 35 H 1.09000 * 109.46943 * 329.99617 * 7 6 4 36 36 H 1.09000 * 109.47140 * 209.99850 * 7 6 4 37 37 H 0.96692 * 114.00357 * 299.99749 * 10 8 7 38 38 H 1.09005 * 109.47034 * 304.99632 * 11 8 7 39 39 H 1.09002 * 109.47665 * 64.99475 * 11 8 7 40 40 H 1.07999 * 119.90677 * 0.02944 * 14 13 12 41 41 H 1.08003 * 120.09353 * 180.25605 * 15 14 13 42 42 H 0.97002 * 119.99859 * 179.97438 * 20 19 17 43 43 H 1.08004 * 120.09271 * 179.97438 * 25 16 15 44 44 H 1.08005 * 119.90848 * 179.97438 * 26 25 16 45 45 H 1.08999 * 109.46946 * 174.32462 * 31 29 27 46 46 H 1.08995 * 109.46996 * 294.32138 * 31 29 27 47 47 H 1.09000 * 109.47012 * 54.32133 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0200 0.0000 4 6 2.0625 -0.7698 -1.1888 5 8 1.8683 -0.4884 -2.3519 6 7 2.7826 -1.8108 -0.7528 7 6 3.4368 -2.7577 -1.6592 8 6 4.8510 -2.2669 -1.9753 9 1 5.4249 -2.1926 -1.0516 10 8 4.7814 -0.9823 -2.5975 11 6 5.5341 -3.2554 -2.9225 12 8 6.8921 -2.8597 -3.1256 13 6 7.6439 -3.6362 -3.9457 14 6 7.0815 -4.7640 -4.5393 15 6 7.8293 -5.5475 -5.3692 16 6 9.1763 -5.2192 -5.6164 17 6 9.9591 -6.0280 -6.4692 18 1 10.8143 -5.6074 -6.9772 19 6 9.6267 -7.3739 -6.6562 20 7 8.8348 -7.9766 -5.8060 21 14 10.3128 -8.3109 -8.1192 22 1 11.5455 -9.0316 -7.7115 23 1 9.3032 -9.2889 -8.5983 24 1 10.6351 -7.3572 -9.2109 25 6 9.7386 -4.0804 -5.0079 26 6 8.9755 -3.3043 -4.1853 27 6 2.8503 -1.9189 0.5800 28 8 3.4430 -2.7864 1.1848 29 6 2.0729 -0.7848 1.2116 30 1 1.2529 -1.1753 1.8143 31 6 2.9887 0.0999 2.0598 32 1 -0.3633 -1.0274 0.0266 33 1 -0.3633 0.5365 0.8765 34 1 -0.3634 0.4906 -0.9029 35 1 2.8630 -2.8320 -2.5829 36 1 3.4899 -3.7375 -1.1846 37 1 4.2843 -0.9733 -3.4268 38 1 5.5080 -4.2539 -2.4861 39 1 5.0110 -3.2631 -3.8787 40 1 6.0495 -5.0165 -4.3455 41 1 7.3906 -6.4192 -5.8319 42 1 8.6040 -8.9098 -5.9358 43 1 10.7710 -3.8221 -5.1920 44 1 9.4054 -2.4308 -3.7176 45 1 2.4285 0.9626 2.4202 46 1 3.3613 -0.4721 2.9094 47 1 3.8288 0.4394 1.4539 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176630644.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:41 Heat of formation + Delta-G solvation = -139.815229 kcal Electronic energy + Delta-G solvation = -30021.706904 eV Core-core repulsion = 25748.671435 eV Total energy + Delta-G solvation = -4273.035469 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.45429 -39.05984 -38.91603 -37.61396 -36.42747 -36.12779 -34.99237 -33.34804 -31.09971 -30.92349 -29.64874 -29.15720 -27.23237 -25.08434 -24.96653 -24.29792 -22.38461 -21.84416 -20.97258 -20.43886 -19.79833 -17.79639 -17.41492 -17.34655 -16.82287 -16.73923 -16.22359 -15.99399 -15.35287 -15.22206 -14.91224 -14.65814 -14.42402 -14.19094 -14.08367 -13.95646 -13.90149 -13.62090 -12.96251 -12.88668 -12.79199 -12.45209 -12.34873 -12.32365 -12.09390 -11.90391 -11.78388 -11.71373 -11.48974 -11.29035 -11.13104 -10.99303 -10.76786 -10.61581 -10.40709 -10.25880 -9.94579 -9.82046 -9.71737 -9.37807 -9.02160 -7.66492 -7.02122 -6.73772 -4.25845 1.19247 2.08091 2.37749 2.75943 2.95758 3.07656 3.11902 3.20925 3.53657 3.71153 3.82741 3.85174 3.94712 4.24137 4.27674 4.60792 4.61799 4.68111 4.73321 4.79361 4.80644 4.98601 5.08776 5.12309 5.18959 5.23341 5.26407 5.29838 5.37646 5.55322 5.59453 5.64102 5.66209 5.88530 6.08864 6.27365 6.47562 6.69696 6.88231 6.98226 7.06055 7.27074 7.39192 7.44289 7.54805 7.57274 7.89224 7.99436 8.14391 8.42887 8.63840 8.89467 8.98249 10.21180 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.024773 B = 0.001900 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.009877 B =14730.617678 C =14805.869218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.125 4.125 3 H 0.127 0.873 4 C 0.536 3.464 5 O -0.474 6.474 6 N -0.564 5.564 7 C 0.067 3.933 8 C 0.098 3.902 9 H 0.110 0.890 10 O -0.546 6.546 11 C 0.042 3.958 12 O -0.317 6.317 13 C -0.011 4.011 14 C -0.174 4.174 15 C -0.134 4.134 16 C 0.087 3.913 17 C -0.462 4.462 18 H 0.077 0.923 19 C 0.074 3.926 20 N -0.800 5.800 21 Si 0.907 3.093 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.261 1.261 25 C -0.195 4.195 26 C -0.111 4.111 27 C 0.528 3.472 28 O -0.475 6.475 29 C -0.124 4.124 30 H 0.124 0.876 31 C -0.138 4.138 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.377 0.623 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.093 0.907 41 H 0.121 0.879 42 H 0.279 0.721 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.376 12.599 13.037 25.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.146 4.146 3 H 0.145 0.855 4 C 0.324 3.676 5 O -0.344 6.344 6 N -0.307 5.307 7 C -0.055 4.055 8 C 0.037 3.963 9 H 0.128 0.872 10 O -0.351 6.351 11 C -0.035 4.035 12 O -0.233 6.233 13 C -0.054 4.054 14 C -0.193 4.193 15 C -0.154 4.154 16 C 0.085 3.915 17 C -0.492 4.492 18 H 0.095 0.905 19 C -0.142 4.142 20 N -0.426 5.426 21 Si 0.731 3.269 22 H -0.196 1.196 23 H -0.201 1.201 24 H -0.185 1.185 25 C -0.215 4.215 26 C -0.130 4.130 27 C 0.317 3.683 28 O -0.346 6.346 29 C -0.145 4.145 30 H 0.142 0.858 31 C -0.195 4.195 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.119 0.881 36 H 0.126 0.874 37 H 0.225 0.775 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.111 0.889 41 H 0.139 0.861 42 H 0.090 0.910 43 H 0.118 0.882 44 H 0.115 0.885 45 H 0.095 0.905 46 H 0.092 0.908 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.828 12.355 13.373 25.481 hybrid contribution -0.103 -1.197 -1.212 1.707 sum -17.931 11.158 12.160 24.370 Atomic orbital electron populations 1.21698 0.90757 1.03097 1.03878 1.22218 0.99176 1.01586 0.91639 0.85528 1.20719 0.76425 0.79850 0.90582 1.90746 1.56522 1.67980 1.19189 1.46598 1.47211 1.27755 1.09099 1.22443 0.94576 0.93302 0.95184 1.22217 0.92955 0.83965 0.97139 0.87195 1.86601 1.77918 1.29024 1.41597 1.22977 0.84305 0.97646 0.98573 1.85855 1.20651 1.51556 1.65212 1.18587 0.91948 0.94571 1.00294 1.20589 0.98754 0.96912 1.03025 1.20931 0.93906 1.00075 1.00454 1.17601 0.91685 0.91283 0.90921 1.19464 1.11779 0.93972 1.24027 0.90474 1.25884 0.94023 0.98141 0.96176 1.69844 1.29136 1.11915 1.31743 0.86330 0.79231 0.79357 0.81973 1.19637 1.20133 1.18472 1.20603 0.98222 0.99954 1.02739 1.19618 0.91259 1.00391 1.01741 1.20867 0.79688 0.86126 0.81643 1.90794 1.41061 1.36326 1.66412 1.22202 1.00073 0.94718 0.97482 0.85768 1.21698 0.98960 0.99126 0.99742 0.91993 0.90513 0.90766 0.88073 0.87450 0.77519 0.91956 0.92502 0.88899 0.86145 0.91015 0.88162 0.88480 0.90482 0.90793 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.55 9.09 37.16 0.34 -0.21 16 2 C -0.12 -0.72 3.33 -90.83 -0.30 -1.02 16 3 H 0.13 0.59 7.74 -51.93 -0.40 0.18 16 4 C 0.54 5.15 6.90 -11.09 -0.08 5.07 16 5 O -0.47 -5.80 17.05 5.60 0.10 -5.70 16 6 N -0.56 -5.69 2.49 -115.34 -0.29 -5.98 16 7 C 0.07 0.71 5.25 -4.04 -0.02 0.69 16 8 C 0.10 1.31 3.52 -26.74 -0.09 1.21 16 9 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 10 O -0.55 -7.81 12.40 -41.85 -0.52 -8.33 16 11 C 0.04 0.67 4.36 37.15 0.16 0.84 16 12 O -0.32 -6.63 10.09 -23.61 -0.24 -6.87 16 13 C -0.01 -0.26 6.71 -38.78 -0.26 -0.52 16 14 C -0.17 -4.11 8.96 -39.83 -0.36 -4.47 16 15 C -0.13 -3.51 8.64 -39.25 -0.34 -3.85 16 16 C 0.09 2.36 5.57 -106.81 -0.60 1.76 16 17 C -0.46 -12.36 9.04 -37.83 -0.34 -12.70 16 18 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 19 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 20 N -0.80 -20.83 10.97 55.55 0.61 -20.22 16 21 Si 0.91 18.79 29.59 -169.99 -5.03 13.76 16 22 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 23 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 24 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 25 C -0.20 -4.90 9.74 -39.25 -0.38 -5.28 16 26 C -0.11 -2.66 9.92 -39.83 -0.40 -3.05 16 27 C 0.53 5.22 7.43 -11.08 -0.08 5.14 16 28 O -0.48 -6.24 17.47 5.61 0.10 -6.14 16 29 C -0.12 -0.72 3.31 -90.83 -0.30 -1.02 16 30 H 0.12 0.47 7.74 -51.93 -0.40 0.07 16 31 C -0.14 -0.69 9.11 37.16 0.34 -0.35 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.10 0.97 7.83 -51.93 -0.41 0.56 16 36 H 0.11 1.08 7.82 -51.93 -0.41 0.67 16 37 H 0.38 4.61 8.91 45.56 0.41 5.01 16 38 H 0.06 0.96 7.63 -51.93 -0.40 0.56 16 39 H 0.06 0.85 7.66 -51.93 -0.40 0.45 16 40 H 0.09 1.93 6.27 -52.49 -0.33 1.60 16 41 H 0.12 3.22 6.18 -52.48 -0.32 2.90 16 42 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 43 H 0.10 2.33 8.06 -52.48 -0.42 1.91 16 44 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 45 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 394.53 15.07 5.95 5.95 Total: -1.00 -32.79 394.53 -8.14 -40.93 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -6.01 Total: 8.58 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -2.80 Total: -15.98 kcal Atomic # 7 Polarization: -26.52 SS G_CDS: 0.32 Total: -26.20 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.56 Total: -27.04 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.79 -8.14 -40.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176630644.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.887 kcal (2) G-P(sol) polarization free energy of solvation -32.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds