Wall clock time and date at job start Wed Apr 1 2020 05:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.65570 * 2 1 4 4 C 1.51310 * 110.60514 * 237.07489 * 2 1 3 5 5 O 1.21225 * 125.40286 * 61.49830 * 4 2 1 6 6 N 1.33875 * 109.20639 * 241.47903 * 4 2 1 7 7 C 1.46500 * 122.76664 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47152 * 90.00000 * 7 6 4 9 9 H 1.09000 * 109.47509 * 59.99964 * 8 7 6 10 10 O 1.42907 * 109.46775 * 300.00006 * 8 7 6 11 11 C 1.52995 * 109.47240 * 180.02562 * 8 7 6 12 12 O 1.42896 * 109.47243 * 184.99800 * 11 8 7 13 13 C 1.35677 * 117.00200 * 179.97438 * 12 11 8 14 14 C 1.39314 * 119.81626 * 359.72125 * 13 12 11 15 15 C 1.36439 * 120.18344 * 179.76168 * 14 13 12 16 16 C 1.40833 * 119.81226 * 0.51572 * 15 14 13 17 17 C 1.41212 * 120.17954 * 179.71824 * 16 15 14 18 18 H 1.07997 * 119.99908 * 155.16363 * 17 16 15 19 19 C 1.39892 * 120.00201 * 335.16842 * 17 16 15 20 20 N 1.30884 * 119.99776 * 342.16153 * 19 17 16 21 21 Si 1.86793 * 120.00063 * 162.15395 * 19 17 16 22 22 H 1.48507 * 109.46972 * 94.66054 * 21 19 17 23 23 H 1.48504 * 109.47354 * 214.65616 * 21 19 17 24 24 H 1.48503 * 109.47419 * 334.66137 * 21 19 17 25 25 C 1.40829 * 119.63871 * 359.74359 * 16 15 14 26 26 C 1.36433 * 119.81599 * 359.97438 * 25 16 15 27 27 C 1.33884 * 114.47316 * 0.27034 * 6 4 2 28 28 O 1.21223 * 125.39337 * 179.71436 * 27 6 4 29 29 C 1.51315 * 109.20541 * 359.57036 * 27 6 4 30 30 H 1.08999 * 110.41373 * 118.81396 * 29 27 6 31 31 C 1.53000 * 110.93091 * 241.71757 * 29 27 6 32 32 H 1.09006 * 109.46869 * 181.48085 * 1 2 3 33 33 H 1.09000 * 109.47094 * 301.47273 * 1 2 3 34 34 H 1.08996 * 109.47639 * 61.47931 * 1 2 3 35 35 H 1.09000 * 109.46943 * 329.99617 * 7 6 4 36 36 H 1.09000 * 109.47140 * 209.99850 * 7 6 4 37 37 H 0.96692 * 114.00357 * 299.99749 * 10 8 7 38 38 H 1.09005 * 109.47034 * 304.99632 * 11 8 7 39 39 H 1.09002 * 109.47665 * 64.99475 * 11 8 7 40 40 H 1.07999 * 119.90677 * 0.02944 * 14 13 12 41 41 H 1.08003 * 120.09353 * 180.25605 * 15 14 13 42 42 H 0.97002 * 119.99859 * 179.97438 * 20 19 17 43 43 H 1.08004 * 120.09271 * 179.97438 * 25 16 15 44 44 H 1.08005 * 119.90848 * 179.97438 * 26 25 16 45 45 H 1.08999 * 109.46946 * 174.32462 * 31 29 27 46 46 H 1.08995 * 109.46996 * 294.32138 * 31 29 27 47 47 H 1.09000 * 109.47012 * 54.32133 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0200 0.0000 4 6 2.0625 -0.7698 -1.1888 5 8 1.8683 -0.4884 -2.3519 6 7 2.7826 -1.8108 -0.7528 7 6 3.4368 -2.7577 -1.6592 8 6 4.8510 -2.2669 -1.9753 9 1 5.4249 -2.1926 -1.0516 10 8 4.7814 -0.9823 -2.5975 11 6 5.5341 -3.2554 -2.9225 12 8 6.8921 -2.8597 -3.1256 13 6 7.6439 -3.6362 -3.9457 14 6 7.0815 -4.7640 -4.5393 15 6 7.8293 -5.5475 -5.3692 16 6 9.1763 -5.2192 -5.6164 17 6 9.9591 -6.0280 -6.4692 18 1 10.8143 -5.6074 -6.9772 19 6 9.6267 -7.3739 -6.6562 20 7 8.8348 -7.9766 -5.8060 21 14 10.3128 -8.3109 -8.1192 22 1 11.5455 -9.0316 -7.7115 23 1 9.3032 -9.2889 -8.5983 24 1 10.6351 -7.3572 -9.2109 25 6 9.7386 -4.0804 -5.0079 26 6 8.9755 -3.3043 -4.1853 27 6 2.8503 -1.9189 0.5800 28 8 3.4430 -2.7864 1.1848 29 6 2.0729 -0.7848 1.2116 30 1 1.2529 -1.1753 1.8143 31 6 2.9887 0.0999 2.0598 32 1 -0.3633 -1.0274 0.0266 33 1 -0.3633 0.5365 0.8765 34 1 -0.3634 0.4906 -0.9029 35 1 2.8630 -2.8320 -2.5829 36 1 3.4899 -3.7375 -1.1846 37 1 4.2843 -0.9733 -3.4268 38 1 5.5080 -4.2539 -2.4861 39 1 5.0110 -3.2631 -3.8787 40 1 6.0495 -5.0165 -4.3455 41 1 7.3906 -6.4192 -5.8319 42 1 8.6040 -8.9098 -5.9358 43 1 10.7710 -3.8221 -5.1920 44 1 9.4054 -2.4308 -3.7176 45 1 2.4285 0.9626 2.4202 46 1 3.3613 -0.4721 2.9094 47 1 3.8288 0.4394 1.4539 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176630644.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:40 Heat of formation + Delta-G solvation = -161.036288 kcal Electronic energy + Delta-G solvation = -30022.627118 eV Core-core repulsion = 25748.671435 eV Total energy + Delta-G solvation = -4273.955683 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.18709 -40.69429 -39.75226 -38.98429 -37.74472 -37.17966 -35.76704 -35.23648 -32.25979 -31.55861 -31.32430 -30.94578 -28.32818 -26.62590 -25.76288 -25.21828 -23.62843 -22.78872 -22.44739 -22.12539 -20.57405 -19.30312 -18.94591 -18.34729 -18.09915 -17.72006 -17.34558 -17.06683 -16.89793 -16.10717 -16.03855 -15.76673 -15.58568 -15.47285 -15.34931 -15.08155 -14.70496 -14.55851 -14.32855 -14.23123 -13.85359 -13.60686 -13.40583 -13.31333 -13.23348 -13.16391 -12.80266 -12.77142 -12.72537 -12.49220 -12.36439 -12.27429 -12.11899 -11.82732 -11.67944 -11.60769 -11.29370 -11.19779 -11.00069 -10.89676 -10.71895 -9.60658 -8.94922 -8.62824 -6.25276 0.43954 0.90336 1.00880 1.30977 1.38480 1.47969 1.54501 1.64627 2.21384 2.43139 2.69613 2.98098 3.14493 3.22471 3.34733 3.61965 3.67267 3.68942 3.76158 3.85606 4.04320 4.23045 4.24974 4.28665 4.29974 4.31015 4.40693 4.42816 4.44843 4.71365 4.85527 4.86678 4.88748 4.94864 4.97403 4.99575 5.12381 5.26862 5.30151 5.33830 5.47998 5.62645 5.72306 5.93116 6.03202 6.19851 6.24402 6.50671 6.54711 6.67514 6.74949 6.92487 7.05744 8.34411 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.024773 B = 0.001900 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.009877 B =14730.617678 C =14805.869218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.114 4.114 3 H 0.143 0.857 4 C 0.529 3.471 5 O -0.504 6.504 6 N -0.569 5.569 7 C 0.069 3.931 8 C 0.110 3.890 9 H 0.094 0.906 10 O -0.558 6.558 11 C 0.035 3.965 12 O -0.329 6.329 13 C -0.004 4.004 14 C -0.174 4.174 15 C -0.155 4.155 16 C 0.054 3.946 17 C -0.498 4.498 18 H 0.076 0.924 19 C 0.033 3.967 20 N -0.831 5.831 21 Si 0.982 3.018 22 H -0.263 1.263 23 H -0.266 1.266 24 H -0.259 1.259 25 C -0.205 4.205 26 C -0.122 4.122 27 C 0.522 3.478 28 O -0.514 6.514 29 C -0.111 4.111 30 H 0.152 0.848 31 C -0.137 4.137 32 H 0.060 0.940 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.386 0.614 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.120 0.880 41 H 0.108 0.892 42 H 0.287 0.713 43 H 0.110 0.890 44 H 0.117 0.883 45 H 0.108 0.892 46 H 0.067 0.933 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.111 13.501 13.860 27.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.135 4.135 3 H 0.161 0.839 4 C 0.320 3.680 5 O -0.377 6.377 6 N -0.311 5.311 7 C -0.053 4.053 8 C 0.050 3.950 9 H 0.112 0.888 10 O -0.365 6.365 11 C -0.042 4.042 12 O -0.244 6.244 13 C -0.048 4.048 14 C -0.193 4.193 15 C -0.174 4.174 16 C 0.052 3.948 17 C -0.528 4.528 18 H 0.094 0.906 19 C -0.181 4.181 20 N -0.458 5.458 21 Si 0.803 3.197 22 H -0.188 1.188 23 H -0.191 1.191 24 H -0.183 1.183 25 C -0.224 4.224 26 C -0.141 4.141 27 C 0.313 3.687 28 O -0.388 6.388 29 C -0.132 4.132 30 H 0.170 0.830 31 C -0.194 4.194 32 H 0.080 0.920 33 H 0.124 0.876 34 H 0.085 0.915 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.235 0.765 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.138 0.862 41 H 0.126 0.874 42 H 0.098 0.902 43 H 0.128 0.872 44 H 0.135 0.865 45 H 0.127 0.873 46 H 0.086 0.914 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -19.588 13.286 14.216 27.610 hybrid contribution 0.365 -1.379 -1.368 1.976 sum -19.223 11.907 12.848 26.008 Atomic orbital electron populations 1.21742 0.89005 1.03505 1.04888 1.22315 1.00373 1.01547 0.89227 0.83899 1.21480 0.75693 0.79600 0.91266 1.90728 1.57590 1.68662 1.20715 1.46789 1.47077 1.27873 1.09344 1.22330 0.93042 0.93712 0.96212 1.22053 0.94159 0.83183 0.95633 0.88778 1.86572 1.78287 1.29413 1.42259 1.23308 0.82046 0.98819 0.99981 1.85846 1.22888 1.51342 1.64368 1.18707 0.92186 0.94250 0.99623 1.20808 0.99893 0.96498 1.02121 1.20919 0.94138 1.00516 1.01847 1.17973 0.92436 0.92392 0.91961 1.19715 1.12575 0.95167 1.25318 0.90560 1.26747 0.94163 0.98540 0.98630 1.69891 1.30041 1.12662 1.33172 0.85193 0.78756 0.77828 0.77918 1.18821 1.19053 1.18292 1.20796 0.98970 0.99781 1.02890 1.19896 0.91739 1.00896 1.01550 1.21661 0.79136 0.86456 0.81458 1.90773 1.42894 1.38112 1.66997 1.22311 1.00246 0.93052 0.97596 0.83004 1.21742 0.98745 0.99900 0.99035 0.92043 0.87635 0.91509 0.86895 0.86977 0.76519 0.91288 0.91166 0.86248 0.87406 0.90204 0.87177 0.86543 0.87344 0.91409 0.93146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.64 9.09 71.98 0.65 0.01 16 2 C -0.11 -1.00 3.33 -10.93 -0.04 -1.04 16 3 H 0.14 0.86 7.74 -2.39 -0.02 0.84 16 4 C 0.53 9.46 6.90 87.99 0.61 10.07 16 5 O -0.50 -11.91 17.05 -2.86 -0.05 -11.96 16 6 N -0.57 -10.98 2.49 -756.67 -1.89 -12.87 16 7 C 0.07 1.43 5.25 86.38 0.45 1.89 16 8 C 0.11 2.91 3.52 30.59 0.11 3.02 16 9 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 10 O -0.56 -15.70 12.40 -142.65 -1.77 -17.47 16 11 C 0.04 1.09 4.36 71.98 0.31 1.40 16 12 O -0.33 -13.57 10.09 -85.29 -0.86 -14.43 16 13 C 0.00 -0.18 6.71 22.79 0.15 -0.03 16 14 C -0.17 -8.27 8.96 22.11 0.20 -8.07 16 15 C -0.15 -8.28 8.64 22.48 0.19 -8.09 16 16 C 0.05 3.02 5.57 -21.28 -0.12 2.91 16 17 C -0.50 -27.32 9.04 23.40 0.21 -27.11 16 18 H 0.08 4.02 7.91 -2.91 -0.02 4.00 16 19 C 0.03 1.69 5.13 85.23 0.44 2.13 16 20 N -0.83 -43.97 10.97 21.82 0.24 -43.73 16 21 Si 0.98 38.65 29.59 68.60 2.03 40.68 16 22 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 23 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 24 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 25 C -0.20 -10.46 9.74 22.48 0.22 -10.24 16 26 C -0.12 -5.85 9.92 22.11 0.22 -5.63 16 27 C 0.52 9.79 7.43 87.99 0.65 10.45 16 28 O -0.51 -13.42 17.47 -2.85 -0.05 -13.47 16 29 C -0.11 -1.00 3.31 -10.93 -0.04 -1.04 16 30 H 0.15 0.59 7.74 -2.39 -0.02 0.57 16 31 C -0.14 -1.03 9.11 71.98 0.66 -0.37 16 32 H 0.06 0.32 8.14 -2.38 -0.02 0.30 16 33 H 0.10 -0.05 8.14 -2.39 -0.02 -0.07 16 34 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.11 2.06 7.83 -2.39 -0.02 2.04 16 36 H 0.11 2.21 7.82 -2.39 -0.02 2.19 16 37 H 0.39 9.21 8.91 -74.06 -0.66 8.54 16 38 H 0.07 2.07 7.63 -2.38 -0.02 2.05 16 39 H 0.07 2.01 7.66 -2.39 -0.02 1.99 16 40 H 0.12 4.87 6.27 -2.91 -0.02 4.85 16 41 H 0.11 5.96 6.18 -2.91 -0.02 5.94 16 42 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 43 H 0.11 5.22 8.06 -2.91 -0.02 5.20 16 44 H 0.12 5.01 8.06 -2.91 -0.02 4.99 16 45 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 46 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -72.79 394.53 2.88 -69.91 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: 0.34 Total: 33.06 kcal Atomic # 6 Polarization: -34.64 SS G_CDS: 4.89 Total: -29.75 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -1.65 Total: -56.59 kcal Atomic # 8 Polarization: -54.59 SS G_CDS: -2.73 Total: -57.32 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.68 kcal Total: -72.79 2.88 -69.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176630644.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.123 kcal (2) G-P(sol) polarization free energy of solvation -72.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds