Wall clock time and date at job start Wed Apr 1 2020 04:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21727 * 119.99772 * 359.97438 * 14 13 3 16 16 C 1.46252 * 120.00721 * 180.02562 * 14 13 3 17 17 C 1.34980 * 120.00406 * 179.97438 * 16 14 13 18 18 C 1.46999 * 120.00159 * 179.97438 * 17 16 14 19 19 C 1.39959 * 120.10703 * 359.72605 * 18 17 16 20 20 C 1.38092 * 119.87369 * 179.76819 * 19 18 17 21 21 O 1.35995 * 119.89638 * 180.26380 * 20 19 18 22 22 C 1.42905 * 116.99746 * 0.32911 * 21 20 19 23 23 C 1.39465 * 120.21099 * 0.59220 * 20 19 18 24 24 C 1.39122 * 120.06862 * 359.59874 * 23 20 19 25 25 C 1.38367 * 120.01739 * 0.12056 * 24 23 20 26 26 O 1.36152 * 120.75834 * 180.25950 * 24 23 20 27 27 C 1.43160 * 116.73296 * 342.82550 * 26 24 23 28 28 C 1.53469 * 108.23217 * 46.17657 * 27 26 24 29 29 O 1.36084 * 119.20794 * 179.50946 * 23 20 19 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 33 33 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 34 34 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 35 35 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 36 36 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 37 37 H 1.08001 * 119.99654 * 359.97438 * 16 14 13 38 38 H 1.08003 * 119.99807 * 0.02562 * 17 16 14 39 39 H 1.07997 * 120.06275 * 0.04936 * 19 18 17 40 40 H 1.09001 * 109.47224 * 299.99406 * 22 21 20 41 41 H 1.08999 * 109.47429 * 59.99989 * 22 21 20 42 42 H 1.09005 * 109.47037 * 179.97438 * 22 21 20 43 43 H 1.08004 * 119.97710 * 179.97438 * 25 24 23 44 44 H 1.09000 * 109.71255 * 165.86428 * 27 26 24 45 45 H 1.09003 * 109.71207 * 286.48840 * 27 26 24 46 46 H 1.09007 * 109.71008 * 59.88987 * 28 27 26 47 47 H 1.08995 * 109.71170 * 180.52066 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3421 2.6326 0.4306 16 6 0.0483 3.3188 2.6163 17 6 -1.1706 3.8870 2.7314 18 6 -1.5596 4.5443 3.9875 19 6 -0.6699 4.5772 5.0674 20 6 -1.0385 5.2001 6.2435 21 8 -0.1723 5.2370 7.2913 22 6 1.1019 4.6183 7.1018 23 6 -2.2987 5.7855 6.3625 24 6 -3.1871 5.7512 5.2925 25 6 -2.8220 5.1337 4.1092 26 8 -4.4189 6.3228 5.3915 27 6 -4.8925 6.6072 6.7122 28 6 -3.7581 7.2836 7.4938 29 8 -2.6444 6.3851 7.5342 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.8293 -0.0604 -2.9502 36 1 2.2719 2.1232 1.9977 37 1 0.7380 3.3474 3.4469 38 1 -1.8605 3.8581 1.9010 39 1 0.3047 4.1203 4.9796 40 1 0.9624 3.5614 6.8743 41 1 1.6216 5.1024 6.2750 42 1 1.6938 4.7194 8.0115 43 1 -3.5124 5.1071 3.2790 44 1 -5.7516 7.2759 6.6586 45 1 -5.1784 5.6796 7.2080 46 1 -3.4671 8.2075 6.9938 47 1 -4.0906 7.5030 8.5083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183807629.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:42 Heat of formation + Delta-G solvation = -104.251427 kcal Electronic energy + Delta-G solvation = -29857.940316 eV Core-core repulsion = 25586.447009 eV Total energy + Delta-G solvation = -4271.493307 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.60575 -39.63997 -39.02286 -37.69835 -37.08465 -35.13886 -33.47048 -32.35954 -31.12260 -30.69225 -30.14921 -28.51743 -27.56978 -26.90718 -25.34845 -23.63843 -22.72890 -22.20484 -20.91388 -19.64169 -19.25305 -18.97722 -17.97861 -17.64988 -17.38435 -16.46128 -16.08741 -15.91152 -15.58872 -15.30637 -15.22507 -15.07879 -14.68545 -14.54773 -14.42992 -14.32008 -13.70450 -13.44967 -13.11931 -12.84302 -12.65676 -12.61963 -12.12629 -11.96308 -11.65728 -11.60160 -11.55969 -11.44435 -11.23807 -11.22886 -10.99174 -10.86058 -10.82244 -10.32993 -10.16650 -9.64691 -9.47488 -9.10428 -9.03071 -8.49637 -8.48605 -7.95298 -7.74141 -6.12247 -4.21786 0.44924 1.07088 2.00519 2.65428 2.83270 2.99986 3.25116 3.30708 3.31586 3.47937 3.89279 4.03532 4.09253 4.36057 4.42767 4.46033 4.51993 4.62847 4.70703 4.88396 4.94574 4.95438 5.02890 5.05400 5.11468 5.19053 5.28460 5.34367 5.61474 5.69710 5.79052 5.90607 6.18438 6.40763 6.43760 6.47917 6.51938 6.56902 6.68063 6.86074 7.05862 7.21821 7.23989 7.37786 7.45856 7.62369 7.74578 7.90819 8.18541 8.67312 8.77706 9.13881 9.45521 10.93034 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.018568 B = 0.002094 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.608111 B =13368.462900 C =14423.270937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.701 5.701 14 C 0.528 3.472 15 O -0.550 6.550 16 C -0.178 4.178 17 C -0.050 4.050 18 C -0.013 4.013 19 C -0.195 4.195 20 C 0.138 3.862 21 O -0.305 6.305 22 C 0.023 3.977 23 C 0.018 3.982 24 C 0.085 3.915 25 C -0.130 4.130 26 O -0.302 6.302 27 C 0.019 3.981 28 C 0.019 3.981 29 O -0.295 6.295 30 H 0.022 0.978 31 H 0.050 0.950 32 H 0.039 0.961 33 H 0.031 0.969 34 H 0.099 0.901 35 H 0.265 0.735 36 H 0.388 0.612 37 H 0.121 0.879 38 H 0.140 0.860 39 H 0.144 0.856 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.102 0.898 43 H 0.143 0.857 44 H 0.123 0.877 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.348 11.666 21.061 27.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.347 5.347 14 C 0.314 3.686 15 O -0.431 6.431 16 C -0.199 4.199 17 C -0.070 4.070 18 C -0.014 4.014 19 C -0.214 4.214 20 C 0.092 3.908 21 O -0.219 6.219 22 C -0.072 4.072 23 C -0.027 4.027 24 C 0.040 3.960 25 C -0.148 4.148 26 O -0.216 6.216 27 C -0.056 4.056 28 C -0.057 4.057 29 O -0.210 6.210 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.117 0.883 35 H 0.075 0.925 36 H 0.221 0.779 37 H 0.139 0.861 38 H 0.158 0.842 39 H 0.162 0.838 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.120 0.880 43 H 0.161 0.839 44 H 0.140 0.860 45 H 0.097 0.903 46 H 0.095 0.905 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.901 11.630 20.403 26.795 hybrid contribution 1.380 -0.043 0.311 1.416 sum -11.521 11.587 20.714 26.383 Atomic orbital electron populations 1.21842 0.98313 0.98027 1.01286 1.21933 0.92653 0.99753 1.02267 1.18799 0.94187 0.89224 0.81025 0.93213 1.21193 0.90709 1.39130 1.06322 0.92161 1.24889 0.98588 0.94817 0.95396 1.69885 1.35206 1.37504 1.09299 0.86517 0.84883 0.78294 0.77444 1.20190 1.21138 1.20197 1.46432 1.14437 1.55345 1.18519 1.18134 0.83055 0.79772 0.87592 1.90792 1.51508 1.60386 1.40425 1.23291 0.97605 1.00680 0.98345 1.22162 0.96531 0.93463 0.94806 1.18516 0.92560 0.96978 0.93330 1.21292 1.02082 1.05675 0.92328 1.17938 0.87482 0.97709 0.87670 1.86153 1.25538 1.74610 1.35551 1.23159 0.82596 0.97705 1.03763 1.18120 0.92561 1.04049 0.87981 1.18393 0.84701 0.98440 0.94447 1.20511 0.97153 1.00358 0.96818 1.86359 1.29785 1.76529 1.28937 1.23670 0.97441 1.01960 0.82570 1.23635 0.86198 0.92284 1.03554 1.86378 1.48921 1.57774 1.27905 0.95883 0.93127 0.94235 0.95062 0.88286 0.92498 0.77938 0.86104 0.84204 0.83803 0.92259 0.92240 0.87982 0.83931 0.85956 0.90296 0.90512 0.86051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.51 37.16 0.32 -2.76 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.71 2.24 -69.08 -0.15 6.56 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.54 -13.96 8.73 -34.44 -0.30 -14.26 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.55 11.29 55.43 0.63 -23.92 16 9 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 N -0.70 -14.27 5.02 -56.38 -0.28 -14.55 16 14 C 0.53 10.30 6.30 -13.04 -0.08 10.21 16 15 O -0.55 -12.65 13.37 5.16 0.07 -12.58 16 16 C -0.18 -2.61 9.41 -37.52 -0.35 -2.96 16 17 C -0.05 -0.68 9.45 -37.19 -0.35 -1.03 16 18 C -0.01 -0.16 5.87 -105.10 -0.62 -0.78 16 19 C -0.20 -2.24 8.39 -38.99 -0.33 -2.57 16 20 C 0.14 1.69 6.69 -39.18 -0.26 1.42 16 21 O -0.31 -3.53 10.24 -35.16 -0.36 -3.89 16 22 C 0.02 0.17 9.81 101.05 0.99 1.17 16 23 C 0.02 0.23 6.52 -38.80 -0.25 -0.03 16 24 C 0.09 1.01 6.48 -39.21 -0.25 0.76 16 25 C -0.13 -1.53 9.70 -38.93 -0.38 -1.91 16 26 O -0.30 -3.14 10.41 -33.02 -0.34 -3.49 16 27 C 0.02 0.12 7.26 37.40 0.27 0.40 16 28 C 0.02 0.13 7.26 37.40 0.27 0.40 16 29 O -0.30 -3.35 10.16 -44.90 -0.46 -3.80 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 1.20 7.84 -51.93 -0.41 0.80 16 32 H 0.04 0.86 5.65 -51.93 -0.29 0.56 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 35 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.39 6.77 8.52 -40.82 -0.35 6.42 16 37 H 0.12 1.39 6.07 -52.49 -0.32 1.07 16 38 H 0.14 1.99 7.52 -52.48 -0.39 1.60 16 39 H 0.14 1.39 4.37 -52.49 -0.23 1.16 16 40 H 0.06 0.41 7.64 -51.93 -0.40 0.01 16 41 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.14 1.49 8.06 -52.48 -0.42 1.07 16 44 H 0.12 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 47 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 384.59 15.07 5.80 5.80 Total: -1.00 -33.00 384.59 -8.11 -41.11 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -6.41 Total: 6.85 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -1.72 Total: -6.93 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.34 Total: -38.47 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -1.09 Total: -23.76 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.00 -8.11 -41.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183807629.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.143 kcal (2) G-P(sol) polarization free energy of solvation -33.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds