Wall clock time and date at job start Wed Apr 1 2020 04:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21727 * 119.99772 * 359.97438 * 14 13 3 16 16 C 1.46252 * 120.00721 * 180.02562 * 14 13 3 17 17 C 1.34980 * 120.00406 * 179.97438 * 16 14 13 18 18 C 1.46999 * 120.00159 * 179.97438 * 17 16 14 19 19 C 1.39959 * 120.10703 * 359.72605 * 18 17 16 20 20 C 1.38092 * 119.87369 * 179.76819 * 19 18 17 21 21 O 1.35995 * 119.89638 * 180.26380 * 20 19 18 22 22 C 1.42905 * 116.99746 * 0.32911 * 21 20 19 23 23 C 1.39465 * 120.21099 * 0.59220 * 20 19 18 24 24 C 1.39122 * 120.06862 * 359.59874 * 23 20 19 25 25 C 1.38367 * 120.01739 * 0.12056 * 24 23 20 26 26 O 1.36152 * 120.75834 * 180.25950 * 24 23 20 27 27 C 1.43160 * 116.73296 * 342.82550 * 26 24 23 28 28 C 1.53469 * 108.23217 * 46.17657 * 27 26 24 29 29 O 1.36084 * 119.20794 * 179.50946 * 23 20 19 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 33 33 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 34 34 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 35 35 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 36 36 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 37 37 H 1.08001 * 119.99654 * 359.97438 * 16 14 13 38 38 H 1.08003 * 119.99807 * 0.02562 * 17 16 14 39 39 H 1.07997 * 120.06275 * 0.04936 * 19 18 17 40 40 H 1.09001 * 109.47224 * 299.99406 * 22 21 20 41 41 H 1.08999 * 109.47429 * 59.99989 * 22 21 20 42 42 H 1.09005 * 109.47037 * 179.97438 * 22 21 20 43 43 H 1.08004 * 119.97710 * 179.97438 * 25 24 23 44 44 H 1.09000 * 109.71255 * 165.86428 * 27 26 24 45 45 H 1.09003 * 109.71207 * 286.48840 * 27 26 24 46 46 H 1.09007 * 109.71008 * 59.88987 * 28 27 26 47 47 H 1.08995 * 109.71170 * 180.52066 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3421 2.6326 0.4306 16 6 0.0483 3.3188 2.6163 17 6 -1.1706 3.8870 2.7314 18 6 -1.5596 4.5443 3.9875 19 6 -0.6699 4.5772 5.0674 20 6 -1.0385 5.2001 6.2435 21 8 -0.1723 5.2370 7.2913 22 6 1.1019 4.6183 7.1018 23 6 -2.2987 5.7855 6.3625 24 6 -3.1871 5.7512 5.2925 25 6 -2.8220 5.1337 4.1092 26 8 -4.4189 6.3228 5.3915 27 6 -4.8925 6.6072 6.7122 28 6 -3.7581 7.2836 7.4938 29 8 -2.6444 6.3851 7.5342 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.8293 -0.0604 -2.9502 36 1 2.2719 2.1232 1.9977 37 1 0.7380 3.3474 3.4469 38 1 -1.8605 3.8581 1.9010 39 1 0.3047 4.1203 4.9796 40 1 0.9624 3.5614 6.8743 41 1 1.6216 5.1024 6.2750 42 1 1.6938 4.7194 8.0115 43 1 -3.5124 5.1071 3.2790 44 1 -5.7516 7.2759 6.6586 45 1 -5.1784 5.6796 7.2080 46 1 -3.4671 8.2075 6.9938 47 1 -4.0906 7.5030 8.5083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183807629.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:41 Heat of formation + Delta-G solvation = -125.517500 kcal Electronic energy + Delta-G solvation = -29858.862482 eV Core-core repulsion = 25586.447009 eV Total energy + Delta-G solvation = -4272.415473 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.37812 -40.70926 -40.31897 -38.55291 -37.90550 -36.93605 -34.54742 -34.25019 -32.78895 -31.56088 -31.04873 -29.45400 -28.88072 -28.11008 -26.19923 -25.17783 -24.10566 -23.10977 -22.09806 -21.27003 -20.62265 -19.80687 -19.02020 -18.60886 -18.45930 -17.66492 -17.34729 -17.04985 -16.79858 -16.32012 -16.17294 -16.01155 -15.96082 -15.77857 -15.60794 -15.29274 -15.02608 -14.57903 -14.27885 -14.12023 -13.88985 -13.65130 -13.46605 -13.41299 -13.13985 -12.89458 -12.72503 -12.64324 -12.59008 -12.37630 -12.25600 -12.16967 -12.02532 -11.87050 -11.57049 -11.54401 -11.04316 -10.73711 -10.52797 -10.49311 -9.60288 -9.32482 -8.79615 -8.13991 -6.31279 -0.56342 0.20485 0.92729 1.46288 1.48019 1.55693 1.93470 2.12413 2.30175 2.38490 2.41160 2.72369 2.74893 3.15463 3.32535 3.58536 3.72365 3.84406 3.98642 4.00807 4.13086 4.15921 4.25413 4.36456 4.41757 4.42855 4.51623 4.57288 4.59668 4.61642 4.76412 4.78774 4.83755 4.86475 4.99023 5.08532 5.22277 5.31269 5.41262 5.46563 5.52238 5.58942 5.65340 5.78281 5.82618 5.97213 6.11205 6.19240 6.45765 6.76738 7.03750 7.35765 7.62037 8.91165 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.018568 B = 0.002094 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.608111 B =13368.462900 C =14423.270937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.277 3.723 4 H -0.002 1.002 5 C -0.548 4.548 6 H 0.073 0.927 7 C 0.014 3.986 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.264 1.264 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.699 5.699 14 C 0.525 3.475 15 O -0.593 6.593 16 C -0.191 4.191 17 C -0.025 4.025 18 C -0.027 4.027 19 C -0.188 4.188 20 C 0.125 3.875 21 O -0.322 6.322 22 C 0.013 3.987 23 C 0.012 3.988 24 C 0.079 3.921 25 C -0.133 4.133 26 O -0.315 6.315 27 C 0.013 3.987 28 C 0.012 3.988 29 O -0.314 6.314 30 H 0.044 0.956 31 H 0.025 0.975 32 H 0.044 0.956 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.264 0.736 36 H 0.405 0.595 37 H 0.157 0.843 38 H 0.129 0.871 39 H 0.163 0.837 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.121 0.879 43 H 0.150 0.850 44 H 0.157 0.843 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.020 12.476 23.781 29.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.016 0.984 5 C -0.586 4.586 6 H 0.091 0.909 7 C -0.186 4.186 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.189 1.189 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.346 5.346 14 C 0.315 3.685 15 O -0.477 6.477 16 C -0.211 4.211 17 C -0.045 4.045 18 C -0.027 4.027 19 C -0.206 4.206 20 C 0.079 3.921 21 O -0.235 6.235 22 C -0.081 4.081 23 C -0.033 4.033 24 C 0.033 3.967 25 C -0.152 4.152 26 O -0.230 6.230 27 C -0.061 4.061 28 C -0.062 4.062 29 O -0.229 6.229 30 H 0.063 0.937 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.240 0.760 37 H 0.174 0.826 38 H 0.147 0.853 39 H 0.180 0.820 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.140 0.860 43 H 0.168 0.832 44 H 0.175 0.825 45 H 0.100 0.900 46 H 0.098 0.902 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -12.571 12.457 23.177 29.162 hybrid contribution 1.111 -0.167 -0.413 1.197 sum -11.460 12.290 22.765 28.295 Atomic orbital electron populations 1.21679 0.97013 0.99087 1.00294 1.21785 0.93731 0.99167 1.01307 1.18371 0.93653 0.89188 0.81430 0.98434 1.21559 0.91413 1.38920 1.06735 0.90919 1.25781 1.03299 0.94437 0.95067 1.70048 1.37108 1.38343 1.09823 0.85430 0.79150 0.78414 0.77523 1.18855 1.21347 1.19688 1.46167 1.15397 1.55490 1.17584 1.18823 0.82038 0.78925 0.88696 1.90773 1.52565 1.61912 1.42448 1.23051 0.98931 1.02043 0.97100 1.22173 0.95717 0.91615 0.94951 1.18390 0.93244 0.98119 0.92973 1.21440 1.02524 1.04971 0.91698 1.18112 0.87893 0.97993 0.88106 1.86137 1.26736 1.75107 1.35567 1.23451 0.81334 0.98098 1.05265 1.18373 0.92815 1.03790 0.88352 1.18441 0.85392 0.98558 0.94270 1.20669 0.97199 1.00061 0.97256 1.86336 1.29069 1.76260 1.31320 1.24024 0.98223 1.02931 0.80917 1.23997 0.85048 0.91487 1.05717 1.86345 1.50546 1.58376 1.27638 0.93652 0.95590 0.93699 0.93993 0.91032 0.92643 0.75997 0.82559 0.85294 0.82016 0.91369 0.91439 0.86050 0.83227 0.82502 0.89952 0.90238 0.82786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.61 8.51 71.98 0.61 -5.00 16 2 C -0.12 -5.97 5.45 30.60 0.17 -5.80 16 3 C 0.28 14.17 2.24 44.25 0.10 14.27 16 4 H 0.00 -0.14 7.58 -2.39 -0.02 -0.15 16 5 C -0.55 -28.73 8.73 25.60 0.22 -28.51 16 6 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 7 C 0.01 0.76 5.29 84.66 0.45 1.21 16 8 N -0.91 -52.32 11.29 21.45 0.24 -52.08 16 9 Si 0.97 41.77 29.54 68.60 2.03 43.80 16 10 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 11 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 13 N -0.70 -28.43 5.02 -450.49 -2.26 -30.69 16 14 C 0.53 20.61 6.30 86.33 0.54 21.15 16 15 O -0.59 -28.19 13.37 -4.44 -0.06 -28.25 16 16 C -0.19 -5.34 9.41 23.60 0.22 -5.12 16 17 C -0.02 -0.65 9.45 23.82 0.23 -0.43 16 18 C -0.03 -0.62 5.87 -20.17 -0.12 -0.74 16 19 C -0.19 -3.98 8.39 22.65 0.19 -3.79 16 20 C 0.13 2.88 6.69 22.53 0.15 3.03 16 21 O -0.32 -6.94 10.24 -78.73 -0.81 -7.74 16 22 C 0.01 0.16 9.81 113.37 1.11 1.28 16 23 C 0.01 0.29 6.52 22.78 0.15 0.44 16 24 C 0.08 1.79 6.48 22.51 0.15 1.94 16 25 C -0.13 -3.04 9.70 22.69 0.22 -2.82 16 26 O -0.32 -6.12 10.41 -83.05 -0.86 -6.99 16 27 C 0.01 0.14 7.26 72.14 0.52 0.67 16 28 C 0.01 0.14 7.26 72.14 0.52 0.66 16 29 O -0.31 -6.67 10.16 -70.71 -0.72 -7.39 16 30 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.02 1.27 7.84 -2.39 -0.02 1.25 16 32 H 0.04 1.96 5.65 -2.38 -0.01 1.95 16 33 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.07 3.95 5.95 -2.39 -0.01 3.94 16 35 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 36 H 0.40 13.61 8.52 -92.71 -0.79 12.82 16 37 H 0.16 3.17 6.07 -2.91 -0.02 3.15 16 38 H 0.13 3.70 7.52 -2.91 -0.02 3.68 16 39 H 0.16 2.68 4.37 -2.91 -0.01 2.67 16 40 H 0.07 0.77 7.64 -2.39 -0.02 0.75 16 41 H 0.07 0.77 7.67 -2.39 -0.02 0.75 16 42 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 43 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 44 H 0.16 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 47 H 0.15 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -74.00 384.59 3.22 -70.78 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: 0.23 Total: 26.11 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: 5.44 Total: -7.55 kcal Atomic # 7 Polarization: -80.75 SS G_CDS: -2.02 Total: -82.77 kcal Atomic # 8 Polarization: -47.92 SS G_CDS: -2.45 Total: -50.37 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -74.00 3.22 -70.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183807629.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.736 kcal (2) G-P(sol) polarization free energy of solvation -74.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds