Wall clock time and date at job start Wed Apr 1 2020 04:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47195 * 2 1 4 4 H 1.09004 * 109.47514 * 305.69706 * 3 2 1 5 5 C 1.50697 * 109.47410 * 185.69266 * 3 2 1 6 6 H 1.07995 * 120.00446 * 275.00660 * 5 3 2 7 7 C 1.37883 * 119.99613 * 95.00608 * 5 3 2 8 8 N 1.31515 * 119.99759 * 184.83580 * 7 5 3 9 9 Si 1.86798 * 120.00259 * 4.83224 * 7 5 3 10 10 H 1.48493 * 109.47268 * 84.85984 * 9 7 5 11 11 H 1.48495 * 109.46959 * 204.86361 * 9 7 5 12 12 H 1.48498 * 109.46754 * 324.85880 * 9 7 5 13 13 N 1.46507 * 109.47133 * 65.69367 * 3 2 1 14 14 C 1.34777 * 119.99905 * 275.00380 * 13 3 2 15 15 O 1.21274 * 120.00205 * 359.97438 * 14 13 3 16 16 C 1.50696 * 119.99543 * 179.72028 * 14 13 3 17 17 C 1.53004 * 109.47013 * 180.27381 * 16 14 13 18 18 C 1.50704 * 109.47231 * 180.02562 * 17 16 14 19 19 O 1.21295 * 119.99616 * 359.97438 * 18 17 16 20 20 C 1.46854 * 120.00119 * 180.02562 * 18 17 16 21 21 C 1.40017 * 120.12428 * 359.72353 * 20 18 17 22 22 C 1.37609 * 119.93477 * 179.75710 * 21 20 18 23 23 C 1.39095 * 120.30894 * 0.58897 * 22 21 20 24 24 C 1.39355 * 120.08743 * 359.60662 * 23 22 21 25 25 C 1.38181 * 119.98540 * 0.11917 * 24 23 22 26 26 O 1.36150 * 120.75558 * 180.27014 * 24 23 22 27 27 C 1.43166 * 116.70573 * 342.86840 * 26 24 23 28 28 C 1.53463 * 108.23605 * 46.13723 * 27 26 24 29 29 O 1.35920 * 119.21590 * 179.51898 * 23 22 21 30 30 H 1.09001 * 109.47527 * 59.99592 * 1 2 3 31 31 H 1.09000 * 109.47192 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46720 * 299.99196 * 1 2 3 33 33 H 1.09008 * 109.46753 * 240.00179 * 2 1 3 34 34 H 1.08993 * 109.47368 * 120.00670 * 2 1 3 35 35 H 0.97002 * 120.00108 * 180.02562 * 8 7 5 36 36 H 0.97004 * 119.99668 * 94.99533 * 13 3 2 37 37 H 1.08995 * 109.47705 * 300.27488 * 16 14 13 38 38 H 1.09001 * 109.47357 * 60.27698 * 16 14 13 39 39 H 1.09004 * 109.46809 * 300.00277 * 17 16 14 40 40 H 1.09001 * 109.47264 * 60.00240 * 17 16 14 41 41 H 1.07999 * 120.03173 * 0.02664 * 21 20 18 42 42 H 1.08004 * 119.84368 * 180.29595 * 22 21 20 43 43 H 1.08002 * 120.03363 * 179.97438 * 25 24 23 44 44 H 1.08998 * 109.71051 * 165.82368 * 27 26 24 45 45 H 1.09005 * 109.70820 * 286.44891 * 27 26 24 46 46 H 1.08994 * 109.70633 * 59.84936 * 28 27 26 47 47 H 1.09000 * 109.70926 * 180.47353 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5958 1.9850 -0.8346 5 6 3.5404 1.4448 -0.1409 6 1 4.1651 1.3333 0.7329 7 6 4.1156 1.5894 -1.3857 8 7 5.4204 1.4964 -1.5219 9 14 3.0417 1.9172 -2.8785 10 1 2.7752 3.3741 -2.9863 11 1 3.7400 1.4498 -4.1028 12 1 1.7562 1.1883 -2.7331 13 7 1.6668 2.0924 1.2588 14 6 0.4508 2.6588 1.3902 15 8 -0.3341 2.6308 0.4662 16 6 0.0647 3.3217 2.6872 17 6 -1.3579 3.8737 2.5740 18 6 -1.7439 4.5373 3.8709 19 8 -0.9586 4.5655 4.7949 20 6 -3.0711 5.1488 4.0162 21 6 -3.9779 5.1218 2.9497 22 6 -5.2224 5.6916 3.0918 23 6 -5.5807 6.3059 4.2872 24 6 -4.6822 6.3403 5.3518 25 6 -3.4325 5.7657 5.2196 26 8 -5.0208 6.9333 6.5297 27 6 -6.1422 7.8229 6.5033 28 6 -7.2771 7.1421 5.7264 29 8 -6.8121 6.8703 4.4000 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 1.8933 -0.5139 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 5.8251 1.5985 -2.3975 36 1 2.2948 2.1150 1.9978 37 1 0.1079 2.5918 3.4954 38 1 0.7555 4.1382 2.8977 39 1 -1.4010 4.6038 1.7657 40 1 -2.0487 3.0573 2.3636 41 1 -3.7024 4.6505 2.0178 42 1 -5.9224 5.6657 2.2698 43 1 -2.7354 5.7923 6.0441 44 1 -6.4685 8.0334 7.5218 45 1 -5.8625 8.7522 6.0068 46 1 -7.5509 6.2088 6.2183 47 1 -8.1422 7.8037 5.6843 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183953485.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:52 Heat of formation + Delta-G solvation = -132.192169 kcal Electronic energy + Delta-G solvation = -29531.309542 eV Core-core repulsion = 25258.604633 eV Total energy + Delta-G solvation = -4272.704908 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.73978 -40.00834 -39.00351 -37.76651 -37.55211 -35.26771 -32.94256 -32.32948 -31.83951 -31.20943 -31.15083 -29.27482 -27.65088 -26.00755 -25.17654 -23.14989 -22.64845 -22.14372 -20.38420 -19.72215 -19.47946 -19.05950 -17.81546 -17.72285 -17.19523 -16.31718 -15.99850 -15.84498 -15.78795 -15.47416 -15.33939 -14.92154 -14.85463 -14.54907 -14.29683 -14.13272 -13.82943 -13.72603 -13.37468 -12.97719 -12.92802 -12.71553 -12.35303 -12.10576 -11.91399 -11.78560 -11.71843 -11.59840 -11.56663 -11.05447 -10.97838 -10.93904 -10.66164 -10.64314 -9.99819 -9.86482 -9.83416 -9.20113 -9.11775 -9.07051 -8.68669 -8.55525 -7.97095 -6.22286 -4.25714 0.29002 0.89909 2.10335 2.51577 2.67709 3.26143 3.33410 3.34909 3.37043 3.41783 3.64773 3.71684 4.09920 4.23342 4.26434 4.33470 4.35542 4.59132 4.72679 4.76984 4.88356 4.91395 4.94671 5.12887 5.18266 5.20343 5.42458 5.52160 5.67183 5.70375 5.82138 5.91390 5.94005 6.04389 6.07450 6.09970 6.10033 6.26591 6.37701 6.66425 6.79260 6.89351 6.99501 7.02048 7.30330 7.37870 7.38791 7.59973 8.16038 8.60854 8.79077 9.02426 9.40002 10.89448 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.024579 B = 0.001863 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.892163 B =15029.126660 C =15365.893955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.236 3.764 4 H 0.051 0.949 5 C -0.531 4.531 6 H 0.078 0.922 7 C 0.080 3.920 8 N -0.889 5.889 9 Si 0.874 3.126 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.259 1.259 13 N -0.703 5.703 14 C 0.500 3.500 15 O -0.559 6.559 16 C -0.135 4.135 17 C -0.147 4.147 18 C 0.400 3.600 19 O -0.452 6.452 20 C -0.165 4.165 21 C -0.062 4.062 22 C -0.127 4.127 23 C 0.080 3.920 24 C 0.033 3.967 25 C -0.054 4.054 26 O -0.306 6.306 27 C 0.020 3.980 28 C 0.019 3.981 29 O -0.304 6.304 30 H 0.050 0.950 31 H 0.029 0.971 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.267 0.733 36 H 0.394 0.606 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.149 0.851 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.124 0.876 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.545 11.296 14.977 31.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C 0.134 3.866 4 H 0.069 0.931 5 C -0.569 4.569 6 H 0.096 0.904 7 C -0.124 4.124 8 N -0.525 5.525 9 Si 0.701 3.299 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.183 1.183 13 N -0.351 5.351 14 C 0.286 3.714 15 O -0.439 6.439 16 C -0.175 4.175 17 C -0.184 4.184 18 C 0.278 3.722 19 O -0.327 6.327 20 C -0.166 4.166 21 C -0.080 4.080 22 C -0.146 4.146 23 C 0.034 3.966 24 C -0.011 4.011 25 C -0.073 4.073 26 O -0.220 6.220 27 C -0.056 4.056 28 C -0.056 4.056 29 O -0.218 6.218 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.227 0.773 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.166 0.834 42 H 0.160 0.840 43 H 0.164 0.836 44 H 0.142 0.858 45 H 0.097 0.903 46 H 0.098 0.902 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -25.538 11.312 14.690 31.558 hybrid contribution -0.369 0.380 -0.352 0.636 sum -25.906 11.691 14.338 31.834 Atomic orbital electron populations 1.21899 0.97435 0.98771 1.02016 1.22071 0.93674 0.99517 1.01183 1.19160 0.95448 0.89084 0.82957 0.93136 1.21031 0.88774 1.51634 0.95441 0.90373 1.24954 0.94881 0.93741 0.98824 1.69887 1.09771 1.48391 1.24465 0.86890 0.81263 0.79578 0.82193 1.19912 1.21277 1.18342 1.46611 1.14583 1.55717 1.18193 1.20440 0.82734 0.79117 0.89116 1.90640 1.50975 1.60487 1.41786 1.21485 0.96812 1.02016 0.97209 1.21747 0.98012 1.02433 0.96243 1.22432 0.84988 0.75701 0.89066 1.90540 1.51366 1.49328 1.41476 1.20289 0.97260 1.04522 0.94551 1.21351 0.91692 0.96384 0.98614 1.20438 0.97996 0.99770 0.96354 1.19269 0.84646 0.97331 0.95334 1.18731 0.94350 1.01389 0.86665 1.20652 0.92909 0.95766 0.97961 1.86359 1.48671 1.58655 1.28344 1.23656 0.85761 0.92346 1.03827 1.23698 0.97620 1.02152 0.82179 1.86286 1.30051 1.76408 1.29043 0.93121 0.95193 0.93112 0.92177 0.93045 0.92275 0.77276 0.88851 0.88701 0.87344 0.87398 0.83369 0.83961 0.83613 0.85825 0.90304 0.90155 0.85777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.53 37.16 0.32 -2.48 16 2 C -0.13 -2.69 5.59 -26.73 -0.15 -2.84 16 3 C 0.24 5.49 1.89 -69.08 -0.13 5.36 16 4 H 0.05 1.28 4.73 -51.93 -0.25 1.04 16 5 C -0.53 -14.16 9.05 -34.44 -0.31 -14.47 16 6 H 0.08 2.21 8.06 -52.49 -0.42 1.78 16 7 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 8 N -0.89 -26.14 13.96 55.43 0.77 -25.36 16 9 Si 0.87 21.45 26.99 -169.99 -4.59 16.86 16 10 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.26 -6.23 6.82 56.52 0.39 -5.85 16 13 N -0.70 -13.74 5.03 -54.93 -0.28 -14.02 16 14 C 0.50 8.94 6.43 -10.99 -0.07 8.87 16 15 O -0.56 -11.39 13.12 5.56 0.07 -11.32 16 16 C -0.13 -1.83 4.99 -27.88 -0.14 -1.97 16 17 C -0.15 -1.70 3.59 -27.88 -0.10 -1.80 16 18 C 0.40 4.71 7.11 -30.82 -0.22 4.49 16 19 O -0.45 -6.46 15.97 5.54 0.09 -6.37 16 20 C -0.16 -1.74 5.87 -105.09 -0.62 -2.36 16 21 C -0.06 -0.55 9.46 -39.14 -0.37 -0.92 16 22 C -0.13 -1.10 9.94 -39.49 -0.39 -1.49 16 23 C 0.08 0.77 6.51 -38.85 -0.25 0.51 16 24 C 0.03 0.34 6.48 -39.19 -0.25 0.09 16 25 C -0.05 -0.59 9.50 -38.95 -0.37 -0.96 16 26 O -0.31 -2.84 10.41 -32.95 -0.34 -3.18 16 27 C 0.02 0.10 7.26 37.40 0.27 0.37 16 28 C 0.02 0.09 7.25 37.40 0.27 0.36 16 29 O -0.30 -2.56 10.40 -32.22 -0.34 -2.89 16 30 H 0.05 1.05 7.89 -51.93 -0.41 0.64 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.96 5.63 -51.93 -0.29 0.67 16 33 H 0.06 1.34 8.14 -51.92 -0.42 0.91 16 34 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.39 6.93 8.59 -40.82 -0.35 6.58 16 37 H 0.09 1.17 8.10 -51.93 -0.42 0.75 16 38 H 0.09 1.25 8.10 -51.93 -0.42 0.82 16 39 H 0.11 1.21 8.03 -51.93 -0.42 0.80 16 40 H 0.11 1.17 8.05 -51.93 -0.42 0.75 16 41 H 0.15 1.06 7.04 -52.49 -0.37 0.69 16 42 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 43 H 0.15 1.61 7.64 -52.49 -0.40 1.20 16 44 H 0.12 0.27 8.14 -51.93 -0.42 -0.16 16 45 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.12 0.22 8.14 -51.93 -0.42 -0.21 16 LS Contribution 387.04 15.07 5.83 5.83 Total: -1.00 -33.67 387.04 -8.09 -41.76 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -6.70 Total: 5.79 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -2.61 Total: -7.09 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.50 Total: -39.38 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.52 Total: -23.77 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.59 Total: 16.86 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.67 -8.09 -41.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183953485.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.432 kcal (2) G-P(sol) polarization free energy of solvation -33.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds