Wall clock time and date at job start Wed Apr 1 2020 04:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47118 * 2 1 4 4 H 1.08994 * 109.47320 * 304.99915 * 3 2 1 5 5 C 1.50701 * 109.47005 * 184.99758 * 3 2 1 6 6 H 1.07994 * 120.00046 * 239.99761 * 5 3 2 7 7 C 1.37875 * 119.99640 * 60.00611 * 5 3 2 8 8 N 1.31513 * 120.00423 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99846 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47363 * 89.99988 * 9 7 5 11 11 H 1.48507 * 109.47266 * 209.99599 * 9 7 5 12 12 H 1.48500 * 109.47366 * 329.99716 * 9 7 5 13 13 O 1.45199 * 109.46782 * 65.00421 * 3 2 1 14 14 C 1.34230 * 116.99799 * 269.99416 * 13 3 2 15 15 O 1.20824 * 120.00176 * 0.02562 * 14 13 3 16 16 C 1.50703 * 120.00150 * 180.02562 * 14 13 3 17 17 C 1.53001 * 109.47189 * 180.02562 * 16 14 13 18 18 N 1.46499 * 109.47167 * 180.02562 * 17 16 14 19 19 C 1.40220 * 120.50533 * 269.97547 * 18 17 16 20 20 C 1.38505 * 120.74648 * 15.47752 * 19 18 17 21 21 C 1.38285 * 119.81650 * 180.02562 * 20 19 18 22 22 C 1.38274 * 120.19786 * 359.97438 * 21 20 19 23 23 C 1.38317 * 120.26252 * 359.97438 * 22 21 20 24 24 C 1.38393 * 119.86681 * 0.02941 * 23 22 21 25 25 O 1.35976 * 120.67839 * 180.02562 * 24 23 22 26 26 C 1.42997 * 116.72344 * 147.07241 * 25 24 23 27 27 H 1.09001 * 109.44037 * 286.42092 * 26 25 24 28 28 C 1.52997 * 109.44348 * 166.48511 * 26 25 24 29 29 C 1.35082 * 120.51166 * 89.99154 * 18 17 16 30 30 O 1.21297 * 120.13129 * 1.67748 * 29 18 17 31 31 H 1.08998 * 109.47193 * 59.99868 * 1 2 3 32 32 H 1.09005 * 109.47007 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46877 * 299.99585 * 1 2 3 34 34 H 1.09001 * 109.47322 * 240.00162 * 2 1 3 35 35 H 1.08998 * 109.47193 * 120.00132 * 2 1 3 36 36 H 0.97001 * 120.00454 * 179.97438 * 8 7 5 37 37 H 1.08993 * 109.47263 * 59.99934 * 16 14 13 38 38 H 1.09007 * 109.46637 * 299.99972 * 16 14 13 39 39 H 1.08998 * 109.47153 * 59.99332 * 17 16 14 40 40 H 1.09004 * 109.46586 * 299.99740 * 17 16 14 41 41 H 1.08003 * 120.09087 * 0.02562 * 20 19 18 42 42 H 1.08001 * 119.90210 * 180.02562 * 21 20 19 43 43 H 1.07999 * 119.86999 * 180.02562 * 22 21 20 44 44 H 1.07998 * 120.06516 * 180.02562 * 23 22 21 45 45 H 1.09002 * 109.47153 * 299.93236 * 28 26 25 46 46 H 1.09001 * 109.46832 * 179.97438 * 28 26 25 47 47 H 1.09004 * 109.47261 * 59.93408 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8812 -1.3818 10 1 6.5548 -0.3503 -0.7603 11 1 6.3829 0.9224 -2.8173 12 1 6.5570 2.0737 -0.6902 13 8 1.6559 2.0916 1.2408 14 6 0.4728 2.7254 1.2560 15 8 -0.2192 2.7370 0.2657 16 6 0.0075 3.4225 2.5085 17 6 -1.3613 4.0591 2.2594 18 7 -1.8133 4.7373 3.4767 19 6 -2.5730 4.0499 4.4341 20 6 -2.6453 2.6669 4.4208 21 6 -3.4008 2.0086 5.3739 22 6 -4.0825 2.7271 6.3388 23 6 -4.0135 4.1084 6.3580 24 6 -3.2595 4.7740 5.4074 25 8 -3.1797 6.1314 5.4112 26 6 -1.9456 6.7042 4.9712 27 1 -1.1850 6.5608 5.7387 28 6 -2.1397 8.2009 4.7198 29 6 -1.5049 6.0344 3.6940 30 8 -0.8751 6.6575 2.8656 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.8292 -0.0610 -2.9499 37 1 0.7245 4.1968 2.7811 38 1 -0.0712 2.6983 3.3195 39 1 -2.0781 3.2845 1.9869 40 1 -1.2829 4.7831 1.4483 41 1 -2.1132 2.1040 3.6682 42 1 -3.4578 0.9302 5.3651 43 1 -4.6706 2.2076 7.0809 44 1 -4.5469 4.6663 7.1133 45 1 -2.9002 8.3448 3.9523 46 1 -1.1990 8.6380 4.3848 47 1 -2.4583 8.6860 5.6425 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187959923.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:12 Heat of formation + Delta-G solvation = -131.406235 kcal Electronic energy + Delta-G solvation = -30901.201339 eV Core-core repulsion = 26628.530511 eV Total energy + Delta-G solvation = -4272.670828 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.92501 -39.75961 -39.17544 -38.08499 -36.39436 -35.71030 -33.54949 -32.48067 -31.99301 -31.30204 -30.57086 -29.18716 -27.42140 -26.04880 -23.83888 -23.64412 -23.13603 -22.38284 -20.69117 -19.70664 -19.52097 -19.42516 -17.77547 -17.30000 -16.90232 -16.66686 -15.89363 -15.77902 -15.59190 -15.50705 -14.95469 -14.83306 -14.67722 -14.46541 -14.21386 -13.67433 -13.47217 -13.33809 -12.97840 -12.82935 -12.68071 -12.56491 -12.43649 -12.22108 -12.05882 -11.53108 -11.50876 -11.46118 -11.32097 -11.24295 -11.17302 -10.99259 -10.69907 -10.65437 -10.30972 -10.16888 -9.84952 -9.67037 -9.40320 -8.99652 -8.84670 -8.47939 -8.15997 -6.20782 -4.27944 0.76100 0.93600 2.00270 2.19653 2.85909 2.91774 3.23153 3.28842 3.32608 3.38470 3.57497 3.71509 4.30517 4.32896 4.37801 4.51504 4.65503 4.77330 4.84671 4.86065 4.95507 5.07612 5.11150 5.28219 5.29734 5.31542 5.39540 5.59588 5.63326 5.72500 5.76894 5.83394 5.87648 6.09342 6.15660 6.17790 6.24094 6.31807 6.40885 6.61203 6.82176 6.91606 7.03454 7.12384 7.21087 7.47066 7.58980 7.70467 7.90817 8.12714 8.57760 8.85120 9.37391 10.85974 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.015794 B = 0.002572 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.348655 B =10882.098347 C =12009.160100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.048 0.952 5 C -0.522 4.522 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.272 1.272 13 O -0.354 6.354 14 C 0.459 3.541 15 O -0.517 6.517 16 C -0.135 4.135 17 C 0.122 3.878 18 N -0.549 5.549 19 C 0.099 3.901 20 C -0.123 4.123 21 C -0.108 4.108 22 C -0.114 4.114 23 C -0.109 4.109 24 C 0.076 3.924 25 O -0.303 6.303 26 C 0.079 3.921 27 H 0.104 0.896 28 C -0.135 4.135 29 C 0.487 3.513 30 O -0.495 6.495 31 H 0.053 0.947 32 H 0.033 0.967 33 H 0.030 0.970 34 H 0.109 0.891 35 H 0.041 0.959 36 H 0.266 0.734 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.136 0.864 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.137 0.863 45 H 0.071 0.929 46 H 0.093 0.907 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.386 7.474 18.888 25.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.560 4.560 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.196 1.196 13 O -0.270 6.270 14 C 0.301 3.699 15 O -0.407 6.407 16 C -0.174 4.174 17 C 0.001 3.999 18 N -0.274 5.274 19 C 0.004 3.996 20 C -0.144 4.144 21 C -0.126 4.126 22 C -0.132 4.132 23 C -0.128 4.128 24 C 0.030 3.970 25 O -0.218 6.218 26 C 0.020 3.980 27 H 0.122 0.878 28 C -0.192 4.192 29 C 0.275 3.725 30 O -0.368 6.368 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.127 0.873 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.116 0.884 40 H 0.124 0.876 41 H 0.154 0.846 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.155 0.845 45 H 0.090 0.910 46 H 0.111 0.889 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.262 7.905 17.894 24.812 hybrid contribution 1.129 -0.359 -0.377 1.244 sum -14.133 7.547 17.517 23.739 Atomic orbital electron populations 1.21855 0.98384 0.99001 1.00663 1.22022 0.92626 0.99325 1.03410 1.20705 0.95073 0.88761 0.78573 0.93432 1.21042 0.89674 1.39017 1.06290 0.91356 1.24882 0.99277 0.94742 0.95022 1.69882 1.35406 1.37792 1.09477 0.86282 0.83858 0.78685 0.77375 1.20339 1.20939 1.19621 1.86475 1.33988 1.62292 1.44279 1.22851 0.81110 0.76990 0.88958 1.90626 1.55590 1.58645 1.35841 1.21668 0.98016 1.01361 0.96382 1.21478 0.94834 0.98348 0.85232 1.45805 1.50338 1.10868 1.20383 1.18177 0.97190 0.92714 0.91490 1.20847 1.01454 0.91173 1.00895 1.21045 0.96702 1.00467 0.94422 1.21004 1.00092 0.92847 0.99302 1.20515 1.00989 0.94107 0.97200 1.18599 1.00452 0.82186 0.95791 1.86226 1.35048 1.16997 1.83504 1.22676 0.86570 0.95731 0.93019 0.87834 1.21720 1.04577 0.89377 1.03515 1.21593 0.79847 0.81373 0.89687 1.90793 1.37832 1.62907 1.45307 0.92767 0.94775 0.95097 0.87284 0.93976 0.92357 0.87775 0.88035 0.88381 0.87626 0.84597 0.84908 0.84916 0.84472 0.91020 0.88878 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.57 37.16 0.32 -2.69 16 2 C -0.14 -3.32 5.49 -26.73 -0.15 -3.47 16 3 C 0.22 5.84 2.25 -27.88 -0.06 5.77 16 4 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 5 C -0.52 -14.62 8.90 -34.44 -0.31 -14.92 16 6 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -24.99 11.29 55.43 0.63 -24.37 16 9 Si 0.91 21.07 29.54 -169.99 -5.02 16.05 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 13 O -0.35 -8.30 9.81 -39.26 -0.39 -8.69 16 14 C 0.46 9.20 6.41 36.01 0.23 9.44 16 15 O -0.52 -11.42 13.12 -18.75 -0.25 -11.67 16 16 C -0.14 -2.01 5.99 -27.88 -0.17 -2.17 16 17 C 0.12 1.69 4.06 -4.04 -0.02 1.67 16 18 N -0.55 -6.93 2.72 -113.19 -0.31 -7.24 16 19 C 0.10 1.10 6.38 -83.49 -0.53 0.57 16 20 C -0.12 -1.21 8.95 -39.47 -0.35 -1.56 16 21 C -0.11 -0.84 10.04 -39.55 -0.40 -1.24 16 22 C -0.11 -0.79 10.04 -39.54 -0.40 -1.19 16 23 C -0.11 -0.87 10.00 -39.50 -0.39 -1.27 16 24 C 0.08 0.78 6.44 -39.10 -0.25 0.53 16 25 O -0.30 -3.13 10.09 -19.66 -0.20 -3.33 16 26 C 0.08 0.77 3.69 -27.83 -0.10 0.67 16 27 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 28 C -0.13 -1.06 9.14 37.16 0.34 -0.72 16 29 C 0.49 6.30 7.38 -10.80 -0.08 6.22 16 30 O -0.50 -7.79 15.80 5.54 0.09 -7.70 16 31 H 0.05 1.21 7.80 -51.93 -0.40 0.81 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.03 0.61 6.06 -51.93 -0.31 0.30 16 34 H 0.11 2.91 5.95 -51.93 -0.31 2.60 16 35 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.10 1.28 7.19 -51.93 -0.37 0.91 16 39 H 0.10 1.28 7.02 -51.93 -0.36 0.91 16 40 H 0.11 1.66 7.40 -51.93 -0.38 1.28 16 41 H 0.14 1.33 5.99 -52.48 -0.31 1.01 16 42 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 43 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 44 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 0.73 7.86 -51.93 -0.41 0.32 16 47 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 384.26 15.07 5.79 5.79 Total: -1.00 -32.19 384.26 -8.66 -40.86 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -6.59 Total: 3.02 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -2.41 Total: -2.73 kcal Atomic # 7 Polarization: -31.92 SS G_CDS: 0.32 Total: -31.61 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.74 Total: -31.39 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.19 -8.66 -40.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187959923.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.551 kcal (2) G-P(sol) polarization free energy of solvation -32.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds