Wall clock time and date at job start Wed Apr 1 2020 04:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47118 * 2 1 4 4 H 1.08994 * 109.47320 * 304.99915 * 3 2 1 5 5 C 1.50701 * 109.47005 * 184.99758 * 3 2 1 6 6 H 1.07994 * 120.00046 * 239.99761 * 5 3 2 7 7 C 1.37875 * 119.99640 * 60.00611 * 5 3 2 8 8 N 1.31513 * 120.00423 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99846 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47363 * 89.99988 * 9 7 5 11 11 H 1.48507 * 109.47266 * 209.99599 * 9 7 5 12 12 H 1.48500 * 109.47366 * 329.99716 * 9 7 5 13 13 O 1.45199 * 109.46782 * 65.00421 * 3 2 1 14 14 C 1.34230 * 116.99799 * 269.99416 * 13 3 2 15 15 O 1.20824 * 120.00176 * 0.02562 * 14 13 3 16 16 C 1.50703 * 120.00150 * 180.02562 * 14 13 3 17 17 C 1.53001 * 109.47189 * 180.02562 * 16 14 13 18 18 N 1.46499 * 109.47167 * 180.02562 * 17 16 14 19 19 C 1.40220 * 120.50533 * 269.97547 * 18 17 16 20 20 C 1.38505 * 120.74648 * 15.47752 * 19 18 17 21 21 C 1.38285 * 119.81650 * 180.02562 * 20 19 18 22 22 C 1.38274 * 120.19786 * 359.97438 * 21 20 19 23 23 C 1.38317 * 120.26252 * 359.97438 * 22 21 20 24 24 C 1.38393 * 119.86681 * 0.02941 * 23 22 21 25 25 O 1.35976 * 120.67839 * 180.02562 * 24 23 22 26 26 C 1.42997 * 116.72344 * 147.07241 * 25 24 23 27 27 H 1.09001 * 109.44037 * 286.42092 * 26 25 24 28 28 C 1.52997 * 109.44348 * 166.48511 * 26 25 24 29 29 C 1.35082 * 120.51166 * 89.99154 * 18 17 16 30 30 O 1.21297 * 120.13129 * 1.67748 * 29 18 17 31 31 H 1.08998 * 109.47193 * 59.99868 * 1 2 3 32 32 H 1.09005 * 109.47007 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46877 * 299.99585 * 1 2 3 34 34 H 1.09001 * 109.47322 * 240.00162 * 2 1 3 35 35 H 1.08998 * 109.47193 * 120.00132 * 2 1 3 36 36 H 0.97001 * 120.00454 * 179.97438 * 8 7 5 37 37 H 1.08993 * 109.47263 * 59.99934 * 16 14 13 38 38 H 1.09007 * 109.46637 * 299.99972 * 16 14 13 39 39 H 1.08998 * 109.47153 * 59.99332 * 17 16 14 40 40 H 1.09004 * 109.46586 * 299.99740 * 17 16 14 41 41 H 1.08003 * 120.09087 * 0.02562 * 20 19 18 42 42 H 1.08001 * 119.90210 * 180.02562 * 21 20 19 43 43 H 1.07999 * 119.86999 * 180.02562 * 22 21 20 44 44 H 1.07998 * 120.06516 * 180.02562 * 23 22 21 45 45 H 1.09002 * 109.47153 * 299.93236 * 28 26 25 46 46 H 1.09001 * 109.46832 * 179.97438 * 28 26 25 47 47 H 1.09004 * 109.47261 * 59.93408 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8812 -1.3818 10 1 6.5548 -0.3503 -0.7603 11 1 6.3829 0.9224 -2.8173 12 1 6.5570 2.0737 -0.6902 13 8 1.6559 2.0916 1.2408 14 6 0.4728 2.7254 1.2560 15 8 -0.2192 2.7370 0.2657 16 6 0.0075 3.4225 2.5085 17 6 -1.3613 4.0591 2.2594 18 7 -1.8133 4.7373 3.4767 19 6 -2.5730 4.0499 4.4341 20 6 -2.6453 2.6669 4.4208 21 6 -3.4008 2.0086 5.3739 22 6 -4.0825 2.7271 6.3388 23 6 -4.0135 4.1084 6.3580 24 6 -3.2595 4.7740 5.4074 25 8 -3.1797 6.1314 5.4112 26 6 -1.9456 6.7042 4.9712 27 1 -1.1850 6.5608 5.7387 28 6 -2.1397 8.2009 4.7198 29 6 -1.5049 6.0344 3.6940 30 8 -0.8751 6.6575 2.8656 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.8292 -0.0610 -2.9499 37 1 0.7245 4.1968 2.7811 38 1 -0.0712 2.6983 3.3195 39 1 -2.0781 3.2845 1.9869 40 1 -1.2829 4.7831 1.4483 41 1 -2.1132 2.1040 3.6682 42 1 -3.4578 0.9302 5.3651 43 1 -4.6706 2.2076 7.0809 44 1 -4.5469 4.6663 7.1133 45 1 -2.9002 8.3448 3.9523 46 1 -1.1990 8.6380 4.3848 47 1 -2.4583 8.6860 5.6425 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187959923.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:11 Heat of formation + Delta-G solvation = -149.092584 kcal Electronic energy + Delta-G solvation = -30901.968277 eV Core-core repulsion = 26628.530511 eV Total energy + Delta-G solvation = -4273.437765 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.77710 -41.46451 -40.06423 -38.89324 -37.87366 -36.98184 -35.54600 -33.55081 -33.20060 -32.89501 -31.26102 -29.98464 -29.34228 -27.20621 -25.31747 -24.50146 -24.36784 -23.27729 -22.36025 -21.27153 -20.52188 -20.29906 -19.08105 -18.68655 -18.27713 -17.95716 -17.45541 -17.22659 -16.59437 -16.49518 -16.41773 -15.80805 -15.70835 -15.43508 -15.39632 -14.91464 -14.75842 -14.54419 -14.21604 -14.12788 -13.81479 -13.56289 -13.36281 -13.32039 -13.26144 -13.15070 -13.13427 -12.84823 -12.83961 -12.56719 -12.45209 -12.21774 -12.17823 -12.12688 -11.78367 -11.63190 -11.44896 -11.32018 -11.07397 -10.86029 -10.54860 -9.67497 -8.95461 -8.30258 -6.47225 0.03062 0.28345 1.09930 1.22736 1.26859 1.39756 1.41214 1.52517 1.99384 2.18653 2.40529 2.72257 2.82127 2.99285 3.50310 3.58124 3.63607 3.75191 3.85398 3.88317 4.04554 4.18745 4.25405 4.32528 4.36245 4.38327 4.39658 4.49845 4.56081 4.62927 4.66996 4.72845 4.79870 4.81720 4.96559 5.07729 5.11290 5.20190 5.25411 5.28708 5.37397 5.48445 5.54212 5.65440 5.69790 5.79354 5.95162 6.09480 6.26195 6.51603 6.56788 6.91857 7.24180 8.76313 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.015794 B = 0.002572 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.348655 B =10882.098347 C =12009.160100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.129 4.129 3 C 0.224 3.776 4 H 0.006 0.994 5 C -0.553 4.553 6 H 0.063 0.937 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.980 3.020 10 H -0.265 1.265 11 H -0.277 1.277 12 H -0.268 1.268 13 O -0.364 6.364 14 C 0.455 3.545 15 O -0.539 6.539 16 C -0.117 4.117 17 C 0.131 3.869 18 N -0.549 5.549 19 C 0.072 3.928 20 C -0.134 4.134 21 C -0.108 4.108 22 C -0.101 4.101 23 C -0.107 4.107 24 C 0.061 3.939 25 O -0.307 6.307 26 C 0.083 3.917 27 H 0.125 0.875 28 C -0.131 4.131 29 C 0.478 3.522 30 O -0.536 6.536 31 H 0.034 0.966 32 H 0.063 0.937 33 H 0.041 0.959 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.271 0.729 37 H 0.106 0.894 38 H 0.131 0.869 39 H 0.105 0.895 40 H 0.080 0.920 41 H 0.132 0.868 42 H 0.155 0.845 43 H 0.167 0.833 44 H 0.159 0.841 45 H 0.059 0.941 46 H 0.091 0.909 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.187 6.694 21.774 27.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.167 4.167 3 C 0.171 3.829 4 H 0.024 0.976 5 C -0.590 4.590 6 H 0.081 0.919 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.803 3.197 10 H -0.190 1.190 11 H -0.202 1.202 12 H -0.193 1.193 13 O -0.280 6.280 14 C 0.299 3.701 15 O -0.430 6.430 16 C -0.155 4.155 17 C 0.009 3.991 18 N -0.274 5.274 19 C -0.022 4.022 20 C -0.154 4.154 21 C -0.126 4.126 22 C -0.119 4.119 23 C -0.126 4.126 24 C 0.015 3.985 25 O -0.222 6.222 26 C 0.024 3.976 27 H 0.143 0.857 28 C -0.188 4.188 29 C 0.268 3.732 30 O -0.412 6.412 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.124 0.876 38 H 0.149 0.851 39 H 0.123 0.877 40 H 0.098 0.902 41 H 0.150 0.850 42 H 0.173 0.827 43 H 0.184 0.816 44 H 0.177 0.823 45 H 0.078 0.922 46 H 0.109 0.891 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -16.106 7.113 20.818 27.265 hybrid contribution 1.250 -0.139 -1.220 1.752 sum -14.856 6.974 19.598 25.562 Atomic orbital electron populations 1.21713 0.95968 1.00760 1.00218 1.21857 0.94751 0.97715 1.02399 1.20407 0.94479 0.89506 0.78464 0.97577 1.21334 0.90666 1.40080 1.06952 0.91853 1.25781 1.04201 0.93863 0.94320 1.70003 1.37407 1.37828 1.09833 0.85233 0.77781 0.79103 0.77611 1.19000 1.20248 1.19277 1.86462 1.35849 1.62975 1.42733 1.23792 0.79772 0.76208 0.90364 1.90616 1.55899 1.59269 1.37226 1.21655 0.98289 1.01399 0.94183 1.21221 0.94482 0.97821 0.85588 1.45772 1.50431 1.10950 1.20224 1.18397 0.98415 0.93351 0.91991 1.20973 1.02142 0.90722 1.01576 1.21374 0.95812 1.01697 0.93745 1.21429 0.98964 0.92479 0.99075 1.20878 1.00096 0.94781 0.96856 1.18914 1.01133 0.82140 0.96355 1.86216 1.35267 1.17312 1.83392 1.22818 0.87045 0.96076 0.91633 0.85721 1.21742 1.04205 0.88422 1.04438 1.22333 0.79116 0.81333 0.90441 1.90766 1.39844 1.63771 1.46801 0.94685 0.91809 0.94023 0.89642 0.93411 0.91980 0.87599 0.85148 0.87681 0.90197 0.85034 0.82720 0.81590 0.82295 0.92178 0.89070 0.87588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.48 8.57 71.98 0.62 -4.87 16 2 C -0.13 -6.43 5.49 30.59 0.17 -6.26 16 3 C 0.22 12.28 2.25 29.85 0.07 12.35 16 4 H 0.01 0.40 7.16 -2.39 -0.02 0.38 16 5 C -0.55 -31.76 8.90 25.60 0.23 -31.53 16 6 H 0.06 3.60 7.81 -2.91 -0.02 3.57 16 7 C 0.02 1.02 5.29 84.65 0.45 1.47 16 8 N -0.91 -52.47 11.29 21.45 0.24 -52.23 16 9 Si 0.98 43.32 29.54 68.60 2.03 45.34 16 10 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 11 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 12 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 13 O -0.36 -17.48 9.81 -51.42 -0.50 -17.99 16 14 C 0.45 18.72 6.41 71.24 0.46 19.18 16 15 O -0.54 -24.80 13.12 21.97 0.29 -24.51 16 16 C -0.12 -3.48 5.99 29.85 0.18 -3.30 16 17 C 0.13 3.73 4.06 86.38 0.35 4.08 16 18 N -0.55 -13.94 2.72 -630.25 -1.71 -15.65 16 19 C 0.07 1.52 6.38 38.14 0.24 1.77 16 20 C -0.13 -2.41 8.95 22.34 0.20 -2.21 16 21 C -0.11 -1.35 10.04 22.29 0.22 -1.13 16 22 C -0.10 -1.00 10.04 22.30 0.22 -0.78 16 23 C -0.11 -1.37 10.00 22.33 0.22 -1.15 16 24 C 0.06 1.13 6.44 22.58 0.15 1.28 16 25 O -0.31 -5.89 10.09 -93.27 -0.94 -6.83 16 26 C 0.08 1.55 3.69 29.88 0.11 1.66 16 27 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 28 C -0.13 -1.96 9.14 71.98 0.66 -1.30 16 29 C 0.48 12.59 7.38 87.64 0.65 13.24 16 30 O -0.54 -17.64 15.80 -3.08 -0.05 -17.69 16 31 H 0.03 1.59 7.80 -2.39 -0.02 1.57 16 32 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 33 H 0.04 1.64 6.06 -2.38 -0.01 1.62 16 34 H 0.09 4.68 5.95 -2.39 -0.01 4.66 16 35 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 37 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 38 H 0.13 3.14 7.19 -2.38 -0.02 3.13 16 39 H 0.11 2.79 7.02 -2.39 -0.02 2.78 16 40 H 0.08 2.69 7.40 -2.38 -0.02 2.67 16 41 H 0.13 2.40 5.99 -2.91 -0.02 2.39 16 42 H 0.16 1.24 8.06 -2.91 -0.02 1.21 16 43 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 44 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 45 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.09 1.41 7.86 -2.39 -0.02 1.39 16 47 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 Total: -1.00 -72.74 384.26 5.53 -67.21 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.99 Total: 19.85 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 5.19 Total: 2.49 kcal Atomic # 7 Polarization: -66.41 SS G_CDS: -1.47 Total: -67.88 kcal Atomic # 8 Polarization: -65.81 SS G_CDS: -1.21 Total: -67.02 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -72.74 5.53 -67.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187959923.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.878 kcal (2) G-P(sol) polarization free energy of solvation -72.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds