Wall clock time and date at job start Wed Apr 1 2020 04:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47506 * 2 1 4 4 H 1.08996 * 109.46851 * 305.00063 * 3 2 1 5 5 C 1.50699 * 109.47077 * 184.99867 * 3 2 1 6 6 H 1.08002 * 120.00295 * 239.99861 * 5 3 2 7 7 C 1.37883 * 120.00013 * 59.99987 * 5 3 2 8 8 N 1.31515 * 119.99706 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00205 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46862 * 90.00080 * 9 7 5 11 11 H 1.48493 * 109.47434 * 210.00438 * 9 7 5 12 12 H 1.48507 * 109.47070 * 330.00626 * 9 7 5 13 13 O 1.45195 * 109.46809 * 65.00024 * 3 2 1 14 14 C 1.34222 * 117.00079 * 269.99812 * 13 3 2 15 15 O 1.20822 * 120.00295 * 0.02562 * 14 13 3 16 16 C 1.50710 * 120.00077 * 180.02562 * 14 13 3 17 17 H 1.08999 * 110.85360 * 303.79290 * 16 14 13 18 18 C 1.54788 * 110.83366 * 67.78489 * 16 14 13 19 19 C 1.51285 * 104.11549 * 143.12426 * 18 16 14 20 20 O 1.21292 * 124.93744 * 163.67308 * 19 18 16 21 21 N 1.34416 * 110.11777 * 343.40610 * 19 18 16 22 22 C 1.40109 * 124.35262 * 179.80531 * 21 19 18 23 23 C 1.38848 * 120.01037 * 353.92848 * 22 21 19 24 24 C 1.38093 * 119.98331 * 179.79203 * 23 22 21 25 25 C 1.38721 * 120.01118 * 0.48913 * 24 23 22 26 26 O 1.35971 * 119.97984 * 179.72261 * 25 24 23 27 27 C 1.42895 * 117.00528 * 0.02562 * 26 25 24 28 28 C 1.38722 * 120.03384 * 359.74229 * 25 24 23 29 29 C 1.38092 * 120.01228 * 0.02799 * 28 25 24 30 30 C 1.46764 * 111.29924 * 359.82237 * 21 19 18 31 31 H 1.08994 * 109.47474 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46809 * 300.00188 * 1 2 3 33 33 H 1.09007 * 109.46747 * 59.99538 * 1 2 3 34 34 H 1.09007 * 109.47198 * 240.00199 * 2 1 3 35 35 H 1.08998 * 109.46955 * 120.00443 * 2 1 3 36 36 H 0.97007 * 119.99568 * 179.97438 * 8 7 5 37 37 H 1.08994 * 110.61617 * 24.42313 * 18 16 14 38 38 H 1.08997 * 110.42643 * 261.72387 * 18 16 14 39 39 H 1.08001 * 120.01162 * 0.02562 * 23 22 21 40 40 H 1.08000 * 119.99316 * 180.25266 * 24 23 22 41 41 H 1.08997 * 109.47107 * 300.00756 * 27 26 25 42 42 H 1.09008 * 109.46770 * 59.99983 * 27 26 25 43 43 H 1.08995 * 109.47424 * 179.97438 * 27 26 25 44 44 H 1.07994 * 119.99157 * 179.97438 * 28 25 24 45 45 H 1.07997 * 120.00197 * 180.02562 * 29 28 25 46 46 H 1.09008 * 110.24417 * 136.01643 * 30 21 19 47 47 H 1.09001 * 110.24504 * 258.01105 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8782 -1.2280 8 7 3.4062 0.3373 -2.1733 9 14 6.0050 0.8809 -1.3818 10 1 6.5548 -0.3507 -0.7602 11 1 6.3830 0.9220 -2.8172 12 1 6.5571 2.0734 -0.6901 13 8 1.6560 2.0916 1.2407 14 6 0.4729 2.7254 1.2560 15 8 -0.2191 2.7371 0.2656 16 6 0.0076 3.4226 2.5085 17 1 -0.0150 2.7319 3.3514 18 6 0.8957 4.6525 2.8162 19 6 -0.0720 5.6786 3.3633 20 8 0.2456 6.6723 3.9820 21 7 -1.3345 5.3318 3.0591 22 6 -2.4674 6.0707 3.4249 23 6 -2.3374 7.1755 4.2558 24 6 -3.4537 7.9059 4.6125 25 6 -4.7060 7.5300 4.1491 26 8 -5.8055 8.2463 4.5053 27 6 -5.5971 9.3736 5.3582 28 6 -4.8372 6.4234 3.3228 29 6 -3.7211 5.6950 2.9615 30 6 -1.3740 4.0795 2.2947 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 3.8293 -0.0606 -2.9503 37 1 1.3689 5.0214 1.9063 38 1 1.6480 4.4010 3.5638 39 1 -1.3630 7.4658 4.6200 40 1 -3.3523 8.7677 5.2555 41 1 -5.1472 9.0428 6.2943 42 1 -4.9319 10.0834 4.8663 43 1 -6.5531 9.8550 5.5643 44 1 -5.8125 6.1312 2.9627 45 1 -3.8233 4.8338 2.3178 46 1 -2.1631 3.4305 2.6746 47 1 -1.5329 4.2882 1.2368 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188079844.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:28 Heat of formation + Delta-G solvation = -126.413350 kcal Electronic energy + Delta-G solvation = -30211.869535 eV Core-core repulsion = 25939.415216 eV Total energy + Delta-G solvation = -4272.454320 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.45146 -40.15964 -39.56314 -37.58241 -36.78713 -35.75086 -33.68386 -32.99201 -31.43506 -31.32676 -29.24585 -27.98511 -27.58824 -27.21197 -24.48350 -23.35754 -23.07240 -21.96345 -20.56269 -19.98792 -19.48493 -18.43176 -17.85920 -17.59113 -16.74601 -16.61382 -16.18993 -15.98337 -15.50311 -15.40209 -15.06192 -14.71258 -14.46244 -14.19945 -14.02401 -13.79888 -13.66976 -13.50925 -13.08833 -12.99876 -12.83095 -12.73603 -12.31751 -12.16723 -11.78481 -11.67314 -11.52277 -11.48538 -11.30296 -11.25538 -11.23532 -11.03395 -10.72867 -10.35942 -10.03998 -9.92959 -9.86403 -9.67683 -9.46517 -9.26788 -8.91490 -8.53044 -7.77764 -6.25742 -4.33213 1.03495 1.13086 2.37551 2.49821 2.71797 3.02908 3.20380 3.24365 3.27995 3.37640 3.58848 4.01417 4.17569 4.27494 4.55763 4.61406 4.65954 4.78750 4.83047 4.84791 4.97667 5.06603 5.12865 5.16545 5.22631 5.31109 5.38699 5.50485 5.63069 5.65988 5.75181 5.80510 5.99708 6.13475 6.15971 6.19596 6.23012 6.35452 6.64258 6.75674 6.84010 6.85456 7.06189 7.12729 7.14169 7.52913 7.64012 7.81985 7.83868 8.06136 8.46357 8.77706 9.32420 10.80857 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.024123 B = 0.002107 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.430015 B =13284.314810 C =14091.224530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C 0.222 3.778 4 H 0.049 0.951 5 C -0.523 4.523 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.348 6.348 14 C 0.465 3.535 15 O -0.509 6.509 16 C -0.098 4.098 17 H 0.127 0.873 18 C -0.138 4.138 19 C 0.522 3.478 20 O -0.512 6.512 21 N -0.557 5.557 22 C 0.134 3.866 23 C -0.116 4.116 24 C -0.179 4.179 25 C 0.098 3.902 26 O -0.320 6.320 27 C 0.028 3.972 28 C -0.123 4.123 29 C -0.116 4.116 30 C 0.107 3.893 31 H 0.034 0.966 32 H 0.031 0.969 33 H 0.053 0.947 34 H 0.110 0.890 35 H 0.042 0.958 36 H 0.267 0.733 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.158 0.842 40 H 0.131 0.869 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.098 0.902 44 H 0.135 0.865 45 H 0.136 0.864 46 H 0.095 0.905 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.965 11.026 13.115 22.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.175 4.175 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.561 4.561 6 H 0.088 0.912 7 C -0.139 4.139 8 N -0.524 5.524 9 Si 0.738 3.262 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.264 6.264 14 C 0.306 3.694 15 O -0.399 6.399 16 C -0.118 4.118 17 H 0.144 0.856 18 C -0.178 4.178 19 C 0.311 3.689 20 O -0.388 6.388 21 N -0.281 5.281 22 C 0.041 3.959 23 C -0.136 4.136 24 C -0.198 4.198 25 C 0.053 3.947 26 O -0.233 6.233 27 C -0.068 4.068 28 C -0.142 4.142 29 C -0.137 4.137 30 C -0.015 4.015 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.128 0.872 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.175 0.825 40 H 0.149 0.851 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.117 0.883 44 H 0.153 0.847 45 H 0.154 0.846 46 H 0.113 0.887 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.118 11.398 12.878 22.898 hybrid contribution 0.993 -0.084 -0.176 1.012 sum -14.125 11.314 12.702 22.110 Atomic orbital electron populations 1.21864 0.98347 0.99149 1.00664 1.22038 0.92652 0.99284 1.03527 1.20753 0.95156 0.88793 0.78333 0.93358 1.21024 0.89541 1.39212 1.06334 0.91236 1.24884 0.99285 0.94701 0.95037 1.69883 1.35440 1.37669 1.09453 0.86281 0.83803 0.78729 0.77396 1.20335 1.20966 1.19586 1.86478 1.33491 1.61981 1.44431 1.22512 0.81364 0.77118 0.88379 1.90636 1.55467 1.58365 1.35396 1.21877 0.94833 0.97406 0.97696 0.85550 1.22338 0.97804 0.92507 1.05135 1.21026 0.83009 0.86329 0.78488 1.90613 1.80483 1.27708 1.39985 1.45809 1.05368 1.24161 1.52723 1.17690 0.85803 0.93879 0.98527 1.21436 1.00843 0.94098 0.97267 1.21133 0.91566 1.02529 1.04575 1.19003 0.85801 0.93086 0.96835 1.86059 1.30926 1.41264 1.65098 1.23035 1.03475 0.87008 0.93242 1.20183 0.99267 0.94731 0.99996 1.20657 0.90119 1.01235 1.01652 1.22229 0.97034 0.83743 0.98460 0.94718 0.95017 0.92755 0.87239 0.93873 0.92314 0.86331 0.85963 0.82455 0.85136 0.92694 0.92681 0.88343 0.84704 0.84630 0.88701 0.87783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.57 37.16 0.32 -2.55 16 2 C -0.14 -3.18 5.49 -26.73 -0.15 -3.32 16 3 C 0.22 5.46 2.25 -27.88 -0.06 5.40 16 4 H 0.05 1.32 7.16 -51.93 -0.37 0.95 16 5 C -0.52 -13.84 8.90 -34.44 -0.31 -14.15 16 6 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 7 C 0.06 1.67 5.29 -17.82 -0.09 1.57 16 8 N -0.89 -24.06 11.29 55.43 0.63 -23.44 16 9 Si 0.91 20.35 29.54 -169.99 -5.02 15.32 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 13 O -0.35 -7.32 9.81 -39.24 -0.38 -7.71 16 14 C 0.46 8.15 5.64 36.01 0.20 8.36 16 15 O -0.51 -10.05 12.65 -18.75 -0.24 -10.29 16 16 C -0.10 -1.21 3.67 -90.05 -0.33 -1.54 16 17 H 0.13 1.27 8.14 -51.93 -0.42 0.84 16 18 C -0.14 -1.67 6.41 -26.65 -0.17 -1.84 16 19 C 0.52 7.00 7.92 -10.86 -0.09 6.92 16 20 O -0.51 -8.06 14.82 5.55 0.08 -7.98 16 21 N -0.56 -6.80 3.14 -112.23 -0.35 -7.16 16 22 C 0.13 1.63 6.60 -83.62 -0.55 1.08 16 23 C -0.12 -1.43 9.28 -39.41 -0.37 -1.80 16 24 C -0.18 -1.88 9.03 -39.46 -0.36 -2.24 16 25 C 0.10 1.04 6.69 -39.22 -0.26 0.78 16 26 O -0.32 -3.13 10.50 -19.65 -0.21 -3.34 16 27 C 0.03 0.17 9.81 101.05 0.99 1.16 16 28 C -0.12 -1.24 9.98 -39.46 -0.39 -1.64 16 29 C -0.12 -1.21 9.40 -39.41 -0.37 -1.58 16 30 C 0.11 1.20 5.62 -3.12 -0.02 1.18 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.03 0.59 6.06 -51.93 -0.31 0.27 16 33 H 0.05 1.15 7.80 -51.92 -0.40 0.74 16 34 H 0.11 2.80 5.95 -51.93 -0.31 2.49 16 35 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 37 H 0.12 1.52 7.89 -51.93 -0.41 1.11 16 38 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.16 2.13 5.26 -52.49 -0.28 1.85 16 40 H 0.13 1.08 6.29 -52.49 -0.33 0.75 16 41 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 42 H 0.05 0.30 7.66 -51.92 -0.40 -0.10 16 43 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 45 H 0.14 1.18 7.01 -52.49 -0.37 0.81 16 46 H 0.09 0.85 7.70 -51.92 -0.40 0.45 16 47 H 0.10 1.28 6.96 -51.93 -0.36 0.92 16 LS Contribution 381.90 15.07 5.76 5.76 Total: -1.00 -30.87 381.90 -8.16 -39.03 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -6.42 Total: 4.01 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -2.00 Total: -4.22 kcal Atomic # 7 Polarization: -30.87 SS G_CDS: 0.27 Total: -30.59 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.75 Total: -29.31 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.87 -8.16 -39.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188079844.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.381 kcal (2) G-P(sol) polarization free energy of solvation -30.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds