Wall clock time and date at job start Wed Apr 1 2020 04:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.47251 * 90.00172 * 9 7 5 11 11 H 1.48500 * 109.47096 * 209.99741 * 9 7 5 12 12 H 1.48494 * 109.47360 * 329.99947 * 9 7 5 13 13 O 1.45203 * 109.47162 * 295.00626 * 3 2 1 14 14 C 1.34228 * 117.00100 * 89.99663 * 13 3 2 15 15 O 1.20817 * 119.99998 * 359.97438 * 14 13 3 16 16 C 1.50703 * 119.99508 * 179.97438 * 14 13 3 17 17 H 1.08996 * 110.85617 * 56.21112 * 16 14 13 18 18 C 1.54629 * 110.97435 * 292.37731 * 16 14 13 19 19 C 1.51278 * 104.19644 * 217.08722 * 18 16 14 20 20 O 1.21292 * 124.93910 * 196.24874 * 19 18 16 21 21 N 1.34418 * 110.11712 * 16.25353 * 19 18 16 22 22 C 1.40118 * 124.34774 * 180.43117 * 21 19 18 23 23 C 1.38719 * 120.09023 * 269.69207 * 22 21 19 24 24 C 1.38202 * 119.98598 * 179.77102 * 23 22 21 25 25 C 1.38281 * 120.16338 * 0.50959 * 24 23 22 26 26 C 1.38242 * 120.17579 * 359.74684 * 25 24 23 27 27 C 1.38548 * 120.01985 * 0.02562 * 26 25 24 28 28 O 1.35973 * 120.08423 * 180.02562 * 27 26 25 29 29 C 1.42894 * 116.99904 * 359.97438 * 28 27 26 30 30 C 1.46765 * 111.30082 * 0.40515 * 21 19 18 31 31 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 32 32 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 34 34 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 35 35 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 36 36 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 37 37 H 1.09003 * 110.47918 * 335.76262 * 18 16 14 38 38 H 1.08997 * 110.48699 * 98.40550 * 18 16 14 39 39 H 1.08004 * 120.00571 * 0.02825 * 23 22 21 40 40 H 1.08003 * 119.91594 * 180.23356 * 24 23 22 41 41 H 1.07991 * 119.90826 * 179.76419 * 25 24 23 42 42 H 1.08002 * 119.98654 * 180.02562 * 26 25 24 43 43 H 1.09009 * 109.46937 * 299.99534 * 29 28 27 44 44 H 1.09000 * 109.47607 * 59.99583 * 29 28 27 45 45 H 1.09003 * 109.47229 * 180.02562 * 29 28 27 46 46 H 1.08999 * 110.24264 * 223.98807 * 30 21 19 47 47 H 1.08996 * 110.24473 * 101.98945 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.4428 2.1130 2.0837 11 1 6.4391 -0.3110 2.1544 12 1 6.6131 0.8396 0.0269 13 8 1.6558 2.0917 -1.2407 14 6 0.4726 2.7255 -1.2558 15 8 -0.2192 2.7369 -0.2654 16 6 0.0074 3.4227 -2.5083 17 1 -0.0153 2.7321 -3.3512 18 6 0.8948 4.6497 -2.8208 19 6 -0.0725 5.6788 -3.3629 20 8 0.2450 6.6723 -3.9820 21 7 -1.3350 5.3319 -3.0586 22 6 -2.4679 6.0708 -3.4245 23 6 -2.9584 7.0559 -2.5799 24 6 -4.0732 7.7866 -2.9450 25 6 -4.7083 7.5314 -4.1466 26 6 -4.2283 6.5477 -4.9910 27 6 -3.1086 5.8138 -4.6345 28 8 -2.6351 4.8463 -5.4643 29 6 -3.3420 4.6389 -6.6887 30 6 -1.3744 4.0795 -2.2944 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 3.8293 -0.0605 2.9501 37 1 1.3723 5.0165 -1.9122 38 1 1.6438 4.3976 -3.5715 39 1 -2.4667 7.2545 -1.6390 40 1 -4.4518 8.5558 -2.2883 41 1 -5.5813 8.1023 -4.4260 42 1 -4.7265 6.3512 -5.9289 43 1 -4.3726 4.3588 -6.4703 44 1 -3.3316 5.5580 -7.2745 45 1 -2.8614 3.8411 -7.2551 46 1 -2.1634 3.4306 -2.6743 47 1 -1.5332 4.2881 -1.2365 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188089002.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:30 Heat of formation + Delta-G solvation = -125.417143 kcal Electronic energy + Delta-G solvation = -30875.471951 eV Core-core repulsion = 26603.060830 eV Total energy + Delta-G solvation = -4272.411121 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.24399 -40.10319 -39.26881 -37.62478 -36.57017 -35.66980 -33.67428 -33.19844 -31.38512 -30.52922 -29.55875 -27.79628 -27.54796 -27.29038 -24.39157 -23.15466 -22.65736 -22.44275 -20.58034 -19.97128 -19.39219 -18.39507 -17.58218 -17.32736 -16.66676 -16.53651 -16.17077 -15.93659 -15.45986 -15.22822 -15.12254 -14.83419 -14.64687 -14.33165 -13.96626 -13.76675 -13.55828 -13.04870 -12.97876 -12.88414 -12.80012 -12.44985 -12.18966 -11.95847 -11.67915 -11.52497 -11.45793 -11.43100 -11.37455 -11.23064 -11.16382 -10.96667 -10.70817 -10.31439 -10.09265 -9.83458 -9.66047 -9.42607 -9.18023 -8.97743 -8.85197 -8.49134 -8.46856 -6.21857 -4.28998 0.90494 1.11552 2.51867 2.71842 2.83454 2.98251 3.23123 3.28591 3.31351 3.35878 3.53552 4.24586 4.30714 4.49037 4.50090 4.57286 4.77999 4.83246 4.83964 4.92688 5.00578 5.07245 5.10582 5.17315 5.23350 5.39402 5.47369 5.56345 5.64369 5.82050 5.89244 5.91995 6.04018 6.16487 6.18205 6.24700 6.32570 6.40659 6.58361 6.81313 6.90390 6.92607 7.11389 7.11593 7.18982 7.57732 7.68941 7.88217 8.11082 8.13876 8.54221 8.83199 9.36504 10.84851 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.019125 B = 0.002440 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.694201 B =11474.639294 C =11719.258938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.048 0.952 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.910 3.090 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.349 6.349 14 C 0.465 3.535 15 O -0.510 6.510 16 C -0.097 4.097 17 H 0.124 0.876 18 C -0.137 4.137 19 C 0.529 3.471 20 O -0.522 6.522 21 N -0.571 5.571 22 C 0.114 3.886 23 C -0.069 4.069 24 C -0.150 4.150 25 C -0.075 4.075 26 C -0.206 4.206 27 C 0.136 3.864 28 O -0.307 6.307 29 C 0.026 3.974 30 C 0.121 3.879 31 H 0.053 0.947 32 H 0.033 0.967 33 H 0.031 0.969 34 H 0.109 0.891 35 H 0.042 0.958 36 H 0.266 0.734 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.134 0.866 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.132 0.868 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.101 0.899 46 H 0.086 0.914 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.594 9.299 -13.864 23.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.560 4.560 6 H 0.088 0.912 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.737 3.263 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.265 6.265 14 C 0.307 3.693 15 O -0.400 6.400 16 C -0.117 4.117 17 H 0.142 0.858 18 C -0.177 4.177 19 C 0.318 3.682 20 O -0.397 6.397 21 N -0.302 5.302 22 C 0.024 3.976 23 C -0.089 4.089 24 C -0.169 4.169 25 C -0.093 4.093 26 C -0.225 4.225 27 C 0.089 3.911 28 O -0.219 6.219 29 C -0.069 4.069 30 C -0.001 4.001 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.127 0.873 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.150 0.850 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.120 0.880 46 H 0.105 0.895 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.423 9.580 -13.690 23.428 hybrid contribution 0.568 -0.177 0.073 0.600 sum -15.854 9.404 -13.617 22.917 Atomic orbital electron populations 1.21862 0.98354 0.99078 1.00700 1.22026 0.92640 0.99315 1.03458 1.20732 0.95104 0.88790 0.78453 0.93405 1.21035 0.89609 1.39057 1.06295 0.91247 1.24877 0.99245 0.94708 0.95072 1.69884 1.35421 1.37793 1.09443 0.86290 0.83866 0.77713 0.78391 1.20390 1.20961 1.19561 1.86482 1.33637 1.62052 1.44309 1.22588 0.81223 0.77013 0.88485 1.90622 1.55488 1.58439 1.35471 1.21828 0.95187 0.97393 0.97284 0.85835 1.22262 0.97785 0.92789 1.04841 1.20955 0.82963 0.86132 0.78144 1.90718 1.80531 1.28228 1.40230 1.45435 1.04451 1.24730 1.55605 1.16688 0.90779 0.97337 0.92797 1.21257 0.95491 0.93213 0.98902 1.20979 0.96798 1.01399 0.97728 1.21011 0.98895 0.95912 0.93517 1.21157 0.98456 1.00481 1.02421 1.19326 0.92668 0.89091 0.90014 1.86166 1.53618 1.51764 1.30358 1.23101 0.97263 1.02200 0.84315 1.22097 0.96399 0.83883 0.97722 0.92774 0.94782 0.94983 0.87294 0.93905 0.92359 0.86706 0.86347 0.84804 0.85222 0.85412 0.85010 0.92568 0.92607 0.88035 0.89539 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.56 37.16 0.32 -2.64 16 2 C -0.14 -3.24 5.49 -26.73 -0.15 -3.39 16 3 C 0.22 5.60 2.25 -27.88 -0.06 5.54 16 4 H 0.05 1.34 7.16 -51.93 -0.37 0.97 16 5 C -0.52 -14.10 8.90 -34.44 -0.31 -14.41 16 6 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 7 C 0.06 1.69 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -24.45 11.29 55.43 0.63 -23.83 16 9 Si 0.91 20.65 29.54 -169.99 -5.02 15.63 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 O -0.35 -7.66 9.81 -39.25 -0.38 -8.05 16 14 C 0.47 8.68 5.64 36.01 0.20 8.88 16 15 O -0.51 -10.58 12.65 -18.74 -0.24 -10.82 16 16 C -0.10 -1.35 3.66 -90.14 -0.33 -1.68 16 17 H 0.12 1.47 8.14 -51.93 -0.42 1.05 16 18 C -0.14 -1.89 6.41 -26.74 -0.17 -2.06 16 19 C 0.53 8.17 7.99 -10.86 -0.09 8.08 16 20 O -0.52 -9.73 17.71 5.55 0.10 -9.63 16 21 N -0.57 -7.87 2.70 -112.13 -0.30 -8.17 16 22 C 0.11 1.49 5.40 -83.49 -0.45 1.04 16 23 C -0.07 -0.78 9.96 -39.42 -0.39 -1.17 16 24 C -0.15 -1.34 10.04 -39.58 -0.40 -1.74 16 25 C -0.08 -0.61 10.04 -39.56 -0.40 -1.01 16 26 C -0.21 -1.88 9.04 -39.47 -0.36 -2.24 16 27 C 0.14 1.62 6.70 -39.07 -0.26 1.35 16 28 O -0.31 -3.57 10.24 -19.66 -0.20 -3.78 16 29 C 0.03 0.18 9.81 101.05 0.99 1.18 16 30 C 0.12 1.56 6.65 -3.12 -0.02 1.54 16 31 H 0.05 1.18 7.80 -51.93 -0.40 0.77 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.03 0.62 6.06 -51.93 -0.31 0.31 16 34 H 0.11 2.84 5.95 -51.93 -0.31 2.53 16 35 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 37 H 0.11 1.63 7.89 -51.93 -0.41 1.22 16 38 H 0.12 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 40 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16 41 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.13 0.87 6.30 -52.49 -0.33 0.54 16 43 H 0.06 0.31 7.66 -51.92 -0.40 -0.09 16 44 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 45 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.10 1.33 6.96 -51.93 -0.36 0.97 16 LS Contribution 389.66 15.07 5.87 5.87 Total: -1.00 -32.76 389.66 -8.16 -40.92 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -6.65 Total: 2.98 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -1.96 Total: -1.13 kcal Atomic # 7 Polarization: -32.32 SS G_CDS: 0.32 Total: -32.00 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -0.73 Total: -32.28 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.76 -8.16 -40.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188089002.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.496 kcal (2) G-P(sol) polarization free energy of solvation -32.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds