Wall clock time and date at job start Wed Apr 1 2020 04:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47450 * 2 1 4 4 H 1.08999 * 109.46990 * 305.00436 * 3 2 1 5 5 C 1.50696 * 109.47426 * 185.00289 * 3 2 1 6 6 H 1.08005 * 119.99950 * 240.00104 * 5 3 2 7 7 C 1.37875 * 120.00401 * 59.99839 * 5 3 2 8 8 N 1.31512 * 119.99425 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00420 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.47120 * 59.99726 * 9 7 5 11 11 H 1.48498 * 109.47311 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47070 * 299.99961 * 9 7 5 13 13 O 1.45203 * 109.46757 * 64.99747 * 3 2 1 14 14 C 1.34231 * 117.00183 * 269.99975 * 13 3 2 15 15 O 1.20821 * 119.99734 * 0.02562 * 14 13 3 16 16 C 1.50697 * 119.99702 * 179.97438 * 14 13 3 17 17 H 1.09007 * 110.88470 * 62.36195 * 16 14 13 18 18 C 1.54625 * 110.97397 * 298.54771 * 16 14 13 19 19 C 1.51273 * 104.19646 * 217.08414 * 18 16 14 20 20 O 1.21305 * 124.94357 * 196.23272 * 19 18 16 21 21 N 1.34417 * 110.11741 * 16.25386 * 19 18 16 22 22 C 1.40128 * 124.34961 * 180.40544 * 21 19 18 23 23 C 1.38727 * 120.08718 * 90.00367 * 22 21 19 24 24 C 1.38196 * 119.98272 * 180.02562 * 23 22 21 25 25 C 1.38272 * 120.16610 * 0.02562 * 24 23 22 26 26 C 1.38244 * 120.18032 * 0.02562 * 25 24 23 27 27 C 1.38555 * 120.01230 * 359.97438 * 26 25 24 28 28 O 1.35973 * 120.08294 * 179.72963 * 27 26 25 29 29 C 1.42908 * 117.00092 * 359.97438 * 28 27 26 30 30 C 1.46763 * 111.29909 * 0.66969 * 21 19 18 31 31 H 1.09001 * 109.46948 * 299.99723 * 1 2 3 32 32 H 1.09001 * 109.47343 * 60.00149 * 1 2 3 33 33 H 1.08998 * 109.47047 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.47071 * 239.99811 * 2 1 3 35 35 H 1.09000 * 109.47068 * 120.00323 * 2 1 3 36 36 H 0.97005 * 119.99705 * 180.02562 * 8 7 5 37 37 H 1.09005 * 110.48177 * 98.40388 * 18 16 14 38 38 H 1.08994 * 110.59832 * 335.82578 * 18 16 14 39 39 H 1.07999 * 120.00860 * 0.02562 * 23 22 21 40 40 H 1.08007 * 119.91900 * 179.97438 * 24 23 22 41 41 H 1.07999 * 119.91651 * 180.02562 * 25 24 23 42 42 H 1.07995 * 119.99747 * 180.02562 * 26 25 24 43 43 H 1.08999 * 109.46831 * 300.00425 * 29 28 27 44 44 H 1.08998 * 109.46905 * 60.00240 * 29 28 27 45 45 H 1.08999 * 109.47332 * 180.02562 * 29 28 27 46 46 H 1.09000 * 110.24132 * 101.72061 * 30 21 19 47 47 H 1.09000 * 110.24719 * 223.71287 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3366 -2.1728 9 14 6.0050 0.8800 -1.3812 10 1 6.5967 0.1452 -0.2343 11 1 6.3978 0.2156 -2.6499 12 1 6.5005 2.2799 -1.3809 13 8 1.6559 2.0916 1.2407 14 6 0.4727 2.7254 1.2560 15 8 -0.2192 2.7370 0.2656 16 6 0.0070 3.4215 2.5088 17 1 0.6869 4.2291 2.7803 18 6 -0.1521 2.4170 3.6735 19 6 -1.3723 2.9067 4.4216 20 8 -1.6772 2.5732 5.5474 21 7 -2.0698 3.7646 3.6573 22 6 -3.2497 4.4038 4.0610 23 6 -3.1908 5.6345 4.6985 24 6 -4.3557 6.2627 5.0961 25 6 -5.5813 5.6675 4.8608 26 6 -5.6479 4.4407 4.2271 27 6 -4.4846 3.8042 3.8252 28 8 -4.5481 2.5950 3.2066 29 6 -5.8482 2.0377 3.0032 30 6 -1.4403 3.9410 2.3433 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 3.8293 -0.0619 -2.9495 37 1 0.7258 2.4396 4.3192 38 1 -0.3175 1.4098 3.2913 39 1 -2.2348 6.1016 4.8839 40 1 -4.3086 7.2207 5.5928 41 1 -6.4892 6.1622 5.1730 42 1 -6.6067 3.9786 4.0444 43 1 -6.3393 1.9001 3.9666 44 1 -6.4408 2.7135 2.3866 45 1 -5.7562 1.0743 2.5018 46 1 -1.9696 3.3575 1.5901 47 1 -1.4322 4.9955 2.0675 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188089021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:32 Heat of formation + Delta-G solvation = -143.854691 kcal Electronic energy + Delta-G solvation = -31062.497815 eV Core-core repulsion = 26789.287182 eV Total energy + Delta-G solvation = -4273.210633 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.34236 -41.32180 -40.48271 -38.39701 -38.00887 -37.17451 -35.50883 -34.32380 -33.29941 -31.26430 -30.46575 -29.27530 -28.88434 -28.17371 -25.82798 -24.76584 -23.74362 -23.16481 -22.21775 -21.15651 -20.88694 -19.28796 -18.99884 -18.62416 -18.28462 -17.78037 -17.25772 -16.95610 -16.80593 -16.47411 -16.30109 -16.14506 -15.69108 -15.43552 -14.93002 -14.86381 -14.78753 -14.73725 -14.59832 -14.06745 -13.71208 -13.58598 -13.35751 -13.28304 -13.14047 -13.06944 -12.78935 -12.73761 -12.63029 -12.56411 -12.40664 -12.14449 -12.13303 -12.07727 -11.75057 -11.48207 -11.34946 -11.05615 -10.80617 -10.49914 -10.06025 -9.94995 -9.23112 -8.24920 -6.41099 0.14882 0.38491 1.28903 1.34785 1.43987 1.47133 1.54372 1.65577 2.03787 2.30547 2.42387 2.65767 3.05001 3.07810 3.34679 3.69480 3.78895 3.85365 3.92444 4.13593 4.20040 4.26350 4.31320 4.33343 4.39260 4.40593 4.43168 4.50784 4.54690 4.58652 4.65023 4.71189 4.74269 4.79991 4.86423 5.10607 5.22706 5.23068 5.28566 5.39708 5.46231 5.53505 5.54454 5.69957 5.77058 5.85344 6.00056 6.15106 6.35323 6.63101 6.96875 7.01424 7.30145 8.81367 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.020862 B = 0.002499 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.846743 B =11202.769970 C =11723.729335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.130 4.130 3 C 0.227 3.773 4 H 0.011 0.989 5 C -0.548 4.548 6 H 0.068 0.932 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.977 3.023 10 H -0.266 1.266 11 H -0.280 1.280 12 H -0.268 1.268 13 O -0.355 6.355 14 C 0.462 3.538 15 O -0.533 6.533 16 C -0.082 4.082 17 H 0.161 0.839 18 C -0.132 4.132 19 C 0.527 3.473 20 O -0.561 6.561 21 N -0.561 5.561 22 C 0.071 3.929 23 C -0.079 4.079 24 C -0.149 4.149 25 C -0.069 4.069 26 C -0.208 4.208 27 C 0.112 3.888 28 O -0.340 6.340 29 C 0.019 3.981 30 C 0.126 3.874 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.045 0.955 36 H 0.270 0.730 37 H 0.137 0.863 38 H 0.104 0.896 39 H 0.143 0.857 40 H 0.159 0.841 41 H 0.163 0.837 42 H 0.154 0.846 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.107 0.893 46 H 0.075 0.925 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.907 10.827 12.801 24.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.168 4.168 3 C 0.174 3.826 4 H 0.029 0.971 5 C -0.586 4.586 6 H 0.086 0.914 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.801 3.199 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.193 1.193 13 O -0.271 6.271 14 C 0.306 3.694 15 O -0.424 6.424 16 C -0.102 4.102 17 H 0.179 0.821 18 C -0.172 4.172 19 C 0.316 3.684 20 O -0.439 6.439 21 N -0.290 5.290 22 C -0.018 4.018 23 C -0.098 4.098 24 C -0.167 4.167 25 C -0.087 4.087 26 C -0.227 4.227 27 C 0.066 3.934 28 O -0.253 6.253 29 C -0.075 4.075 30 C 0.004 3.996 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.156 0.844 38 H 0.122 0.878 39 H 0.160 0.840 40 H 0.177 0.823 41 H 0.180 0.820 42 H 0.171 0.829 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.125 0.875 46 H 0.093 0.907 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -18.126 10.416 12.817 24.522 hybrid contribution 0.587 -0.500 -0.780 1.097 sum -17.539 9.916 12.037 23.470 Atomic orbital electron populations 1.21708 0.96341 1.00460 1.00119 1.21873 0.94335 0.98299 1.02337 1.20369 0.94439 0.89183 0.78649 0.97119 1.21312 0.90623 1.39851 1.06794 0.91399 1.25755 1.03946 0.93990 0.94487 1.70004 1.37396 1.37946 1.09885 0.85312 0.78080 0.78781 0.77734 1.19055 1.20512 1.19295 1.86461 1.35496 1.62712 1.42479 1.23469 0.79806 0.76260 0.89875 1.90626 1.55715 1.58999 1.37041 1.21930 0.98425 0.99638 0.90179 0.82122 1.22259 0.98319 0.99986 0.96675 1.21125 0.84946 0.77387 0.84916 1.90689 1.73546 1.60114 1.19578 1.45411 1.23346 1.44503 1.15773 1.17150 0.82721 0.95190 1.06779 1.21420 1.00916 0.92229 0.95201 1.21360 0.91174 1.01929 1.02269 1.21477 0.99407 0.93324 0.94449 1.21502 0.97028 0.98748 1.05425 1.19667 0.94342 0.85762 0.93670 1.86134 1.33532 1.31847 1.73797 1.23331 0.82065 0.99773 1.02297 1.22100 0.89964 1.03955 0.83569 0.94428 0.94399 0.92388 0.89677 0.93575 0.92120 0.84449 0.87801 0.83956 0.82302 0.81970 0.82877 0.91449 0.90858 0.87490 0.90719 0.86846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.52 8.57 71.98 0.62 -4.90 16 2 C -0.13 -6.39 5.49 30.59 0.17 -6.22 16 3 C 0.23 11.83 2.25 29.85 0.07 11.89 16 4 H 0.01 0.65 7.16 -2.39 -0.02 0.63 16 5 C -0.55 -30.10 8.90 25.60 0.23 -29.87 16 6 H 0.07 3.64 7.81 -2.91 -0.02 3.61 16 7 C 0.02 0.97 5.29 84.65 0.45 1.42 16 8 N -0.91 -51.40 11.29 21.45 0.24 -51.15 16 9 Si 0.98 42.08 29.54 68.60 2.03 44.11 16 10 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 11 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 12 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 13 O -0.36 -15.78 9.79 -51.42 -0.50 -16.29 16 14 C 0.46 17.42 5.64 71.24 0.40 17.82 16 15 O -0.53 -22.94 12.71 21.98 0.28 -22.66 16 16 C -0.08 -2.17 3.67 -10.42 -0.04 -2.21 16 17 H 0.16 3.18 8.14 -2.38 -0.02 3.16 16 18 C -0.13 -3.53 6.39 30.58 0.20 -3.34 16 19 C 0.53 16.10 7.98 87.90 0.70 16.80 16 20 O -0.56 -21.03 17.71 -3.11 -0.06 -21.09 16 21 N -0.56 -15.23 2.70 -626.91 -1.69 -16.92 16 22 C 0.07 1.82 5.40 38.18 0.21 2.03 16 23 C -0.08 -1.54 9.96 22.38 0.22 -1.31 16 24 C -0.15 -2.11 10.04 22.27 0.22 -1.88 16 25 C -0.07 -0.90 10.04 22.28 0.22 -0.68 16 26 C -0.21 -3.55 9.04 22.35 0.20 -3.35 16 27 C 0.11 2.75 6.70 22.60 0.15 2.90 16 28 O -0.34 -8.96 10.24 -93.24 -0.95 -9.92 16 29 C 0.02 0.31 9.81 113.37 1.11 1.43 16 30 C 0.13 3.18 6.59 86.89 0.57 3.76 16 31 H 0.04 1.52 6.06 -2.39 -0.01 1.51 16 32 H 0.04 1.71 7.80 -2.39 -0.02 1.69 16 33 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.09 4.60 5.95 -2.39 -0.01 4.59 16 35 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.27 14.28 8.31 -92.70 -0.77 13.51 16 37 H 0.14 3.12 8.14 -2.38 -0.02 3.10 16 38 H 0.10 3.00 7.89 -2.39 -0.02 2.99 16 39 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 40 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 41 H 0.16 0.98 8.06 -2.91 -0.02 0.95 16 42 H 0.15 1.81 6.30 -2.91 -0.02 1.79 16 43 H 0.07 0.89 7.67 -2.39 -0.02 0.87 16 44 H 0.07 0.89 7.66 -2.39 -0.02 0.88 16 45 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.07 2.25 7.07 -2.39 -0.02 2.23 16 47 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -74.33 389.75 6.03 -68.30 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.99 Total: 21.33 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 5.70 Total: 4.28 kcal Atomic # 7 Polarization: -66.62 SS G_CDS: -1.45 Total: -68.07 kcal Atomic # 8 Polarization: -68.72 SS G_CDS: -1.23 Total: -69.95 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -74.33 6.03 -68.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188089021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.556 kcal (2) G-P(sol) polarization free energy of solvation -74.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds