Wall clock time and date at job start Wed Apr 1 2020 04:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47066 * 2 1 4 4 H 1.08991 * 109.47080 * 54.99897 * 3 2 1 5 5 C 1.50696 * 109.47185 * 175.00476 * 3 2 1 6 6 H 1.08004 * 120.00422 * 119.99876 * 5 3 2 7 7 C 1.37878 * 119.99839 * 299.99816 * 5 3 2 8 8 N 1.31509 * 120.00087 * 180.02562 * 7 5 3 9 9 Si 1.86806 * 120.00054 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.46935 * 89.99867 * 9 7 5 11 11 H 1.48495 * 109.47003 * 210.00004 * 9 7 5 12 12 H 1.48503 * 109.46786 * 330.00402 * 9 7 5 13 13 O 1.45208 * 109.46956 * 295.00059 * 3 2 1 14 14 C 1.34802 * 116.99772 * 89.99652 * 13 3 2 15 15 O 1.21557 * 120.00125 * 0.02562 * 14 13 3 16 16 C 1.47030 * 120.00086 * 179.97438 * 14 13 3 17 17 C 1.38872 * 120.91722 * 179.97438 * 16 14 13 18 18 C 1.41104 * 118.87773 * 180.02562 * 17 16 14 19 19 C 1.38504 * 120.68145 * 359.37643 * 18 17 16 20 20 N 1.34833 * 120.48652 * 1.13800 * 19 18 17 21 21 H 0.97001 * 119.02244 * 179.29774 * 20 19 18 22 22 C 1.34322 * 121.96141 * 359.00667 * 20 19 18 23 23 O 1.21790 * 120.09481 * 180.35792 * 22 20 19 24 24 C 1.50710 * 121.40490 * 181.20992 * 19 18 17 25 25 C 1.52563 * 111.34267 * 336.83424 * 24 19 18 26 26 C 1.53000 * 109.51139 * 174.79159 * 25 24 19 27 27 C 1.53003 * 109.50949 * 294.94019 * 25 24 19 28 28 C 1.53468 * 109.23591 * 54.86812 * 25 24 19 29 29 C 1.47298 * 118.96705 * 179.32445 * 18 17 16 30 30 O 1.21311 * 121.06296 * 348.60301 * 29 18 17 31 31 H 1.08996 * 109.46940 * 299.99539 * 1 2 3 32 32 H 1.09000 * 109.47724 * 60.00448 * 1 2 3 33 33 H 1.09010 * 109.47116 * 180.02562 * 1 2 3 34 34 H 1.09011 * 109.47109 * 239.99973 * 2 1 3 35 35 H 1.09000 * 109.47469 * 120.00039 * 2 1 3 36 36 H 0.97006 * 120.00439 * 179.97438 * 8 7 5 37 37 H 1.08006 * 120.56715 * 359.97438 * 17 16 14 38 38 H 1.09001 * 109.10566 * 97.30843 * 24 19 18 39 39 H 1.08998 * 109.10742 * 216.36158 * 24 19 18 40 40 H 1.09011 * 109.46419 * 60.00459 * 26 25 24 41 41 H 1.09003 * 109.47144 * 179.97438 * 26 25 24 42 42 H 1.08992 * 109.47177 * 300.00774 * 26 25 24 43 43 H 1.08998 * 109.47123 * 59.99483 * 27 25 24 44 44 H 1.08997 * 109.46566 * 180.02562 * 27 25 24 45 45 H 1.08997 * 109.46763 * 299.99566 * 27 25 24 46 46 H 1.08992 * 109.90446 * 55.84454 * 28 25 24 47 47 H 1.09006 * 109.89872 * 176.89162 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5418 1.4443 0.1237 6 1 4.1471 1.8889 -0.6525 7 6 4.1433 0.8784 1.2278 8 7 5.4539 0.8805 1.3361 9 14 3.0964 0.1088 2.5700 10 1 2.8756 -1.3272 2.2632 11 1 3.7938 0.2348 3.8750 12 1 1.7877 0.8072 2.6385 13 8 1.6558 2.0917 -1.2408 14 6 0.4675 2.7280 -1.2561 15 8 -0.2282 2.7404 -0.2594 16 6 0.0135 3.4082 -2.4780 17 6 -1.2074 4.0691 -2.5150 18 6 -1.6009 4.7070 -3.7105 19 6 -0.7796 4.6871 -4.8256 20 7 0.4013 4.0372 -4.7940 21 1 0.9551 4.0282 -5.5903 22 6 0.8365 3.4066 -3.6907 23 8 1.9121 2.8354 -3.6979 24 6 -1.1716 5.3858 -6.1022 25 6 -2.6834 5.5688 -6.1933 26 6 -3.0244 6.3934 -7.4362 27 6 -3.3593 4.1993 -6.2862 28 6 -3.1805 6.3017 -4.9399 29 6 -2.9021 5.3957 -3.7567 30 8 -3.7181 5.2520 -2.8706 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3634 -1.0278 0.0005 34 1 1.8933 -0.5139 -0.8901 35 1 1.8934 -0.5138 0.8900 36 1 5.8771 0.4827 2.1130 37 1 -1.8453 4.0937 -1.6438 38 1 -0.6912 6.3637 -6.1357 39 1 -0.8322 4.7934 -6.9519 40 1 -2.6673 5.8743 -8.3257 41 1 -4.1047 6.5234 -7.5009 42 1 -2.5440 7.3694 -7.3677 43 1 -3.1173 3.6138 -5.3993 44 1 -4.4393 4.3309 -6.3517 45 1 -3.0027 3.6777 -7.1743 46 1 -2.6481 7.2460 -4.8266 47 1 -4.2517 6.4872 -5.0189 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188103640.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:59 Heat of formation + Delta-G solvation = -136.360364 kcal Electronic energy + Delta-G solvation = -31334.895784 eV Core-core repulsion = 27062.010129 eV Total energy + Delta-G solvation = -4272.885655 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.94954 -40.03654 -39.35162 -38.02629 -36.74905 -35.92323 -33.87705 -33.38925 -31.80842 -31.20349 -29.51336 -28.19250 -27.91598 -27.42588 -24.23174 -23.76198 -23.03923 -22.42466 -21.00714 -19.99430 -18.97321 -18.34871 -17.90573 -16.99066 -16.51194 -16.37605 -16.17664 -15.93707 -15.66888 -15.48869 -15.28354 -14.98977 -14.90080 -14.45560 -14.29032 -13.77664 -13.41491 -13.31548 -12.96869 -12.84122 -12.72189 -12.55841 -12.48452 -12.36785 -11.87275 -11.85348 -11.80987 -11.60515 -11.45978 -11.40620 -11.34109 -11.13730 -10.66950 -10.60288 -10.25645 -10.09535 -9.92080 -9.81412 -9.48602 -9.40970 -8.93657 -8.54538 -8.29047 -6.11693 -4.12451 0.04521 0.90694 2.21274 2.28107 2.80185 3.26343 3.37793 3.41418 3.43881 3.50692 3.69256 3.72518 3.77323 4.00591 4.15076 4.35127 4.36156 4.48653 4.63038 4.69872 4.83781 4.87589 4.99951 5.07377 5.16805 5.18323 5.25229 5.32439 5.34158 5.36489 5.52554 5.57333 5.69075 5.76204 5.87086 5.94256 6.04121 6.11993 6.18396 6.41345 6.56584 6.66133 6.78057 6.85091 7.17654 7.19634 7.48273 7.63964 7.76715 8.35164 8.73237 8.99803 9.45999 11.00614 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.022421 B = 0.002753 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.552240 B =10166.970236 C =10804.548386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.147 4.147 3 C 0.194 3.806 4 H 0.046 0.954 5 C -0.518 4.518 6 H 0.088 0.912 7 C 0.078 3.922 8 N -0.891 5.891 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.291 1.291 12 H -0.260 1.260 13 O -0.311 6.311 14 C 0.515 3.485 15 O -0.519 6.519 16 C -0.240 4.240 17 C 0.082 3.918 18 C -0.292 4.292 19 C 0.264 3.736 20 N -0.600 5.600 21 H 0.420 0.580 22 C 0.528 3.472 23 O -0.470 6.470 24 C -0.098 4.098 25 C -0.052 4.052 26 C -0.141 4.141 27 C -0.158 4.158 28 C -0.156 4.156 29 C 0.419 3.581 30 O -0.451 6.451 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.041 0.959 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.268 0.732 37 H 0.159 0.841 38 H 0.113 0.887 39 H 0.102 0.898 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.065 0.935 46 H 0.107 0.893 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.213 12.794 -22.088 31.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.185 4.185 3 C 0.140 3.860 4 H 0.064 0.936 5 C -0.556 4.556 6 H 0.106 0.894 7 C -0.124 4.124 8 N -0.528 5.528 9 Si 0.705 3.295 10 H -0.200 1.200 11 H -0.218 1.218 12 H -0.184 1.184 13 O -0.225 6.225 14 C 0.360 3.640 15 O -0.412 6.412 16 C -0.245 4.245 17 C 0.061 3.939 18 C -0.299 4.299 19 C 0.147 3.853 20 N -0.231 5.231 21 H 0.259 0.741 22 C 0.323 3.677 23 O -0.342 6.342 24 C -0.136 4.136 25 C -0.053 4.053 26 C -0.199 4.199 27 C -0.215 4.215 28 C -0.194 4.194 29 C 0.296 3.704 30 O -0.325 6.325 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.177 0.823 38 H 0.131 0.869 39 H 0.120 0.880 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.125 0.875 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -18.927 12.188 -21.008 30.792 hybrid contribution -0.075 -0.567 0.487 0.751 sum -19.002 11.621 -20.521 30.286 Atomic orbital electron populations 1.21891 0.97035 0.99889 1.01775 1.22354 0.94318 0.99690 1.02109 1.21002 0.96380 0.88115 0.80516 0.93637 1.20822 0.87796 1.39308 1.07625 0.89407 1.24733 0.94933 0.95409 0.97355 1.69845 1.08467 1.44756 1.29764 0.87010 0.81103 0.80142 0.81241 1.19996 1.21796 1.18438 1.86785 1.32735 1.61583 1.41398 1.20064 0.81192 0.76687 0.86084 1.90812 1.56027 1.59826 1.34505 1.21133 0.97997 1.11359 0.94026 1.21993 0.91876 0.83480 0.96577 1.19628 1.00483 1.15346 0.94477 1.21227 0.83320 0.85121 0.95624 1.43606 1.17947 1.44673 1.16844 0.74102 1.18244 0.87052 0.79653 0.82728 1.91127 1.20355 1.41077 1.81656 1.21121 0.97849 1.02030 0.92577 1.20474 0.92332 0.96878 0.95629 1.21863 1.02588 0.99587 0.95822 1.22099 1.01424 0.95155 1.02851 1.22519 1.04549 0.99346 0.92978 1.22070 0.84071 0.78590 0.85701 1.90605 1.46977 1.57039 1.37922 0.92496 0.93649 0.94018 0.91242 0.91877 0.92218 0.82335 0.86860 0.87953 0.91772 0.91504 0.91817 0.91991 0.91414 0.91595 0.87474 0.88057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 8.56 37.16 0.32 -2.86 16 2 C -0.15 -3.61 5.14 -26.73 -0.14 -3.75 16 3 C 0.19 5.27 1.84 -27.88 -0.05 5.22 16 4 H 0.05 1.29 6.22 -51.93 -0.32 0.97 16 5 C -0.52 -15.84 9.48 -34.44 -0.33 -16.16 16 6 H 0.09 2.93 8.06 -52.48 -0.42 2.51 16 7 C 0.08 2.36 5.45 -17.82 -0.10 2.26 16 8 N -0.89 -27.96 13.96 55.43 0.77 -27.19 16 9 Si 0.88 22.65 24.41 -169.99 -4.15 18.50 16 10 H -0.27 -6.78 6.83 56.52 0.39 -6.39 16 11 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.26 -6.60 6.53 56.52 0.37 -6.24 16 13 O -0.31 -7.99 8.15 -47.69 -0.39 -8.38 16 14 C 0.51 11.47 6.35 34.29 0.22 11.69 16 15 O -0.52 -12.10 13.60 -19.31 -0.26 -12.36 16 16 C -0.24 -4.14 6.05 -102.74 -0.62 -4.76 16 17 C 0.08 1.13 9.21 -38.26 -0.35 0.78 16 18 C -0.29 -2.89 5.06 -105.03 -0.53 -3.42 16 19 C 0.26 1.84 6.19 -81.17 -0.50 1.33 16 20 N -0.60 -5.41 5.14 -9.17 -0.05 -5.46 16 21 H 0.42 2.43 8.66 -40.82 -0.35 2.08 16 22 C 0.53 8.25 7.88 -13.11 -0.10 8.15 16 23 O -0.47 -9.54 16.23 -15.40 -0.25 -9.79 16 24 C -0.10 -0.24 4.48 -28.10 -0.13 -0.36 16 25 C -0.05 -0.15 0.77 -154.49 -0.12 -0.27 16 26 C -0.14 -0.17 8.48 37.16 0.32 0.15 16 27 C -0.16 -0.67 8.00 37.16 0.30 -0.37 16 28 C -0.16 -0.70 5.11 -27.19 -0.14 -0.84 16 29 C 0.42 3.78 5.65 -30.18 -0.17 3.61 16 30 O -0.45 -5.81 17.22 5.53 0.10 -5.72 16 31 H 0.06 1.24 7.79 -51.93 -0.40 0.84 16 32 H 0.04 0.95 6.06 -51.93 -0.31 0.64 16 33 H 0.04 0.76 8.14 -51.92 -0.42 0.34 16 34 H 0.07 1.67 8.14 -51.92 -0.42 1.25 16 35 H 0.06 1.57 3.21 -51.93 -0.17 1.41 16 36 H 0.27 7.80 8.31 -40.82 -0.34 7.46 16 37 H 0.16 2.33 7.36 -52.48 -0.39 1.95 16 38 H 0.11 0.06 8.14 -51.93 -0.42 -0.36 16 39 H 0.10 0.05 8.14 -51.93 -0.42 -0.37 16 40 H 0.06 0.05 8.14 -51.92 -0.42 -0.37 16 41 H 0.07 0.09 8.14 -51.93 -0.42 -0.33 16 42 H 0.06 0.03 8.14 -51.93 -0.42 -0.39 16 43 H 0.06 0.40 6.02 -51.93 -0.31 0.09 16 44 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 46 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 374.12 15.07 5.64 5.64 Total: -1.00 -39.55 374.12 -7.24 -46.79 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -6.52 Total: -2.43 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -2.13 Total: 0.41 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 0.73 Total: -32.65 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -0.81 Total: -36.25 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.15 Total: 18.50 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -39.55 -7.24 -46.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188103640.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.575 kcal (2) G-P(sol) polarization free energy of solvation -39.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds