Wall clock time and date at job start Wed Apr 1 2020 04:17:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53001 * 109.47066 * 2 1
4 4 H 1.08991 * 109.47080 * 54.99897 * 3 2 1
5 5 C 1.50696 * 109.47185 * 175.00476 * 3 2 1
6 6 H 1.08004 * 120.00422 * 119.99876 * 5 3 2
7 7 C 1.37878 * 119.99839 * 299.99816 * 5 3 2
8 8 N 1.31509 * 120.00087 * 180.02562 * 7 5 3
9 9 Si 1.86806 * 120.00054 * 0.02562 * 7 5 3
10 10 H 1.48499 * 109.46935 * 89.99867 * 9 7 5
11 11 H 1.48495 * 109.47003 * 210.00004 * 9 7 5
12 12 H 1.48503 * 109.46786 * 330.00402 * 9 7 5
13 13 O 1.45208 * 109.46956 * 295.00059 * 3 2 1
14 14 C 1.34802 * 116.99772 * 89.99652 * 13 3 2
15 15 O 1.21557 * 120.00125 * 0.02562 * 14 13 3
16 16 C 1.47030 * 120.00086 * 179.97438 * 14 13 3
17 17 C 1.38872 * 120.91722 * 179.97438 * 16 14 13
18 18 C 1.41104 * 118.87773 * 180.02562 * 17 16 14
19 19 C 1.38504 * 120.68145 * 359.37643 * 18 17 16
20 20 N 1.34833 * 120.48652 * 1.13800 * 19 18 17
21 21 H 0.97001 * 119.02244 * 179.29774 * 20 19 18
22 22 C 1.34322 * 121.96141 * 359.00667 * 20 19 18
23 23 O 1.21790 * 120.09481 * 180.35792 * 22 20 19
24 24 C 1.50710 * 121.40490 * 181.20992 * 19 18 17
25 25 C 1.52563 * 111.34267 * 336.83424 * 24 19 18
26 26 C 1.53000 * 109.51139 * 174.79159 * 25 24 19
27 27 C 1.53003 * 109.50949 * 294.94019 * 25 24 19
28 28 C 1.53468 * 109.23591 * 54.86812 * 25 24 19
29 29 C 1.47298 * 118.96705 * 179.32445 * 18 17 16
30 30 O 1.21311 * 121.06296 * 348.60301 * 29 18 17
31 31 H 1.08996 * 109.46940 * 299.99539 * 1 2 3
32 32 H 1.09000 * 109.47724 * 60.00448 * 1 2 3
33 33 H 1.09010 * 109.47116 * 180.02562 * 1 2 3
34 34 H 1.09011 * 109.47109 * 239.99973 * 2 1 3
35 35 H 1.09000 * 109.47469 * 120.00039 * 2 1 3
36 36 H 0.97006 * 120.00439 * 179.97438 * 8 7 5
37 37 H 1.08006 * 120.56715 * 359.97438 * 17 16 14
38 38 H 1.09001 * 109.10566 * 97.30843 * 24 19 18
39 39 H 1.08998 * 109.10742 * 216.36158 * 24 19 18
40 40 H 1.09011 * 109.46419 * 60.00459 * 26 25 24
41 41 H 1.09003 * 109.47144 * 179.97438 * 26 25 24
42 42 H 1.08992 * 109.47177 * 300.00774 * 26 25 24
43 43 H 1.08998 * 109.47123 * 59.99483 * 27 25 24
44 44 H 1.08997 * 109.46566 * 180.02562 * 27 25 24
45 45 H 1.08997 * 109.46763 * 299.99566 * 27 25 24
46 46 H 1.08992 * 109.90446 * 55.84454 * 28 25 24
47 47 H 1.09006 * 109.89872 * 176.89162 * 28 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9815 0.8417
5 6 3.5418 1.4443 0.1237
6 1 4.1471 1.8889 -0.6525
7 6 4.1433 0.8784 1.2278
8 7 5.4539 0.8805 1.3361
9 14 3.0964 0.1088 2.5700
10 1 2.8756 -1.3272 2.2632
11 1 3.7938 0.2348 3.8750
12 1 1.7877 0.8072 2.6385
13 8 1.6558 2.0917 -1.2408
14 6 0.4675 2.7280 -1.2561
15 8 -0.2282 2.7404 -0.2594
16 6 0.0135 3.4082 -2.4780
17 6 -1.2074 4.0691 -2.5150
18 6 -1.6009 4.7070 -3.7105
19 6 -0.7796 4.6871 -4.8256
20 7 0.4013 4.0372 -4.7940
21 1 0.9551 4.0282 -5.5903
22 6 0.8365 3.4066 -3.6907
23 8 1.9121 2.8354 -3.6979
24 6 -1.1716 5.3858 -6.1022
25 6 -2.6834 5.5688 -6.1933
26 6 -3.0244 6.3934 -7.4362
27 6 -3.3593 4.1993 -6.2862
28 6 -3.1805 6.3017 -4.9399
29 6 -2.9021 5.3957 -3.7567
30 8 -3.7181 5.2520 -2.8706
31 1 -0.3633 0.5137 0.8900
32 1 -0.3634 0.5137 -0.8900
33 1 -0.3634 -1.0278 0.0005
34 1 1.8933 -0.5139 -0.8901
35 1 1.8934 -0.5138 0.8900
36 1 5.8771 0.4827 2.1130
37 1 -1.8453 4.0937 -1.6438
38 1 -0.6912 6.3637 -6.1357
39 1 -0.8322 4.7934 -6.9519
40 1 -2.6673 5.8743 -8.3257
41 1 -4.1047 6.5234 -7.5009
42 1 -2.5440 7.3694 -7.3677
43 1 -3.1173 3.6138 -5.3993
44 1 -4.4393 4.3309 -6.3517
45 1 -3.0027 3.6777 -7.1743
46 1 -2.6481 7.2460 -4.8266
47 1 -4.2517 6.4872 -5.0189
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000188103640.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:17:59
Heat of formation + Delta-G solvation = -136.360364 kcal
Electronic energy + Delta-G solvation = -31334.895784 eV
Core-core repulsion = 27062.010129 eV
Total energy + Delta-G solvation = -4272.885655 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.161 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-41.94954 -40.03654 -39.35162 -38.02629 -36.74905 -35.92323 -33.87705 -33.38925
-31.80842 -31.20349 -29.51336 -28.19250 -27.91598 -27.42588 -24.23174 -23.76198
-23.03923 -22.42466 -21.00714 -19.99430 -18.97321 -18.34871 -17.90573 -16.99066
-16.51194 -16.37605 -16.17664 -15.93707 -15.66888 -15.48869 -15.28354 -14.98977
-14.90080 -14.45560 -14.29032 -13.77664 -13.41491 -13.31548 -12.96869 -12.84122
-12.72189 -12.55841 -12.48452 -12.36785 -11.87275 -11.85348 -11.80987 -11.60515
-11.45978 -11.40620 -11.34109 -11.13730 -10.66950 -10.60288 -10.25645 -10.09535
-9.92080 -9.81412 -9.48602 -9.40970 -8.93657 -8.54538 -8.29047 -6.11693
-4.12451 0.04521 0.90694 2.21274 2.28107 2.80185 3.26343 3.37793
3.41418 3.43881 3.50692 3.69256 3.72518 3.77323 4.00591 4.15076
4.35127 4.36156 4.48653 4.63038 4.69872 4.83781 4.87589 4.99951
5.07377 5.16805 5.18323 5.25229 5.32439 5.34158 5.36489 5.52554
5.57333 5.69075 5.76204 5.87086 5.94256 6.04121 6.11993 6.18396
6.41345 6.56584 6.66133 6.78057 6.85091 7.17654 7.19634 7.48273
7.63964 7.76715 8.35164 8.73237 8.99803 9.45999 11.00614
Molecular weight = 347.16amu
Principal moments of inertia in cm(-1)
A = 0.022421 B = 0.002753 C = 0.002591
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1248.552240 B =10166.970236 C =10804.548386
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.147 4.147
3 C 0.194 3.806
4 H 0.046 0.954
5 C -0.518 4.518
6 H 0.088 0.912
7 C 0.078 3.922
8 N -0.891 5.891
9 Si 0.876 3.124
10 H -0.273 1.273
11 H -0.291 1.291
12 H -0.260 1.260
13 O -0.311 6.311
14 C 0.515 3.485
15 O -0.519 6.519
16 C -0.240 4.240
17 C 0.082 3.918
18 C -0.292 4.292
19 C 0.264 3.736
20 N -0.600 5.600
21 H 0.420 0.580
22 C 0.528 3.472
23 O -0.470 6.470
24 C -0.098 4.098
25 C -0.052 4.052
26 C -0.141 4.141
27 C -0.158 4.158
28 C -0.156 4.156
29 C 0.419 3.581
30 O -0.451 6.451
31 H 0.056 0.944
32 H 0.044 0.956
33 H 0.041 0.959
34 H 0.069 0.931
35 H 0.063 0.937
36 H 0.268 0.732
37 H 0.159 0.841
38 H 0.113 0.887
39 H 0.102 0.898
40 H 0.063 0.937
41 H 0.066 0.934
42 H 0.063 0.937
43 H 0.061 0.939
44 H 0.067 0.933
45 H 0.065 0.935
46 H 0.107 0.893
47 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.213 12.794 -22.088 31.948
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.185 4.185
3 C 0.140 3.860
4 H 0.064 0.936
5 C -0.556 4.556
6 H 0.106 0.894
7 C -0.124 4.124
8 N -0.528 5.528
9 Si 0.705 3.295
10 H -0.200 1.200
11 H -0.218 1.218
12 H -0.184 1.184
13 O -0.225 6.225
14 C 0.360 3.640
15 O -0.412 6.412
16 C -0.245 4.245
17 C 0.061 3.939
18 C -0.299 4.299
19 C 0.147 3.853
20 N -0.231 5.231
21 H 0.259 0.741
22 C 0.323 3.677
23 O -0.342 6.342
24 C -0.136 4.136
25 C -0.053 4.053
26 C -0.199 4.199
27 C -0.215 4.215
28 C -0.194 4.194
29 C 0.296 3.704
30 O -0.325 6.325
31 H 0.075 0.925
32 H 0.064 0.936
33 H 0.060 0.940
34 H 0.088 0.912
35 H 0.081 0.919
36 H 0.078 0.922
37 H 0.177 0.823
38 H 0.131 0.869
39 H 0.120 0.880
40 H 0.082 0.918
41 H 0.085 0.915
42 H 0.082 0.918
43 H 0.080 0.920
44 H 0.086 0.914
45 H 0.084 0.916
46 H 0.125 0.875
47 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges -18.927 12.188 -21.008 30.792
hybrid contribution -0.075 -0.567 0.487 0.751
sum -19.002 11.621 -20.521 30.286
Atomic orbital electron populations
1.21891 0.97035 0.99889 1.01775 1.22354 0.94318 0.99690 1.02109
1.21002 0.96380 0.88115 0.80516 0.93637 1.20822 0.87796 1.39308
1.07625 0.89407 1.24733 0.94933 0.95409 0.97355 1.69845 1.08467
1.44756 1.29764 0.87010 0.81103 0.80142 0.81241 1.19996 1.21796
1.18438 1.86785 1.32735 1.61583 1.41398 1.20064 0.81192 0.76687
0.86084 1.90812 1.56027 1.59826 1.34505 1.21133 0.97997 1.11359
0.94026 1.21993 0.91876 0.83480 0.96577 1.19628 1.00483 1.15346
0.94477 1.21227 0.83320 0.85121 0.95624 1.43606 1.17947 1.44673
1.16844 0.74102 1.18244 0.87052 0.79653 0.82728 1.91127 1.20355
1.41077 1.81656 1.21121 0.97849 1.02030 0.92577 1.20474 0.92332
0.96878 0.95629 1.21863 1.02588 0.99587 0.95822 1.22099 1.01424
0.95155 1.02851 1.22519 1.04549 0.99346 0.92978 1.22070 0.84071
0.78590 0.85701 1.90605 1.46977 1.57039 1.37922 0.92496 0.93649
0.94018 0.91242 0.91877 0.92218 0.82335 0.86860 0.87953 0.91772
0.91504 0.91817 0.91991 0.91414 0.91595 0.87474 0.88057
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.17 8.56 37.16 0.32 -2.86 16
2 C -0.15 -3.61 5.14 -26.73 -0.14 -3.75 16
3 C 0.19 5.27 1.84 -27.88 -0.05 5.22 16
4 H 0.05 1.29 6.22 -51.93 -0.32 0.97 16
5 C -0.52 -15.84 9.48 -34.44 -0.33 -16.16 16
6 H 0.09 2.93 8.06 -52.48 -0.42 2.51 16
7 C 0.08 2.36 5.45 -17.82 -0.10 2.26 16
8 N -0.89 -27.96 13.96 55.43 0.77 -27.19 16
9 Si 0.88 22.65 24.41 -169.99 -4.15 18.50 16
10 H -0.27 -6.78 6.83 56.52 0.39 -6.39 16
11 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16
12 H -0.26 -6.60 6.53 56.52 0.37 -6.24 16
13 O -0.31 -7.99 8.15 -47.69 -0.39 -8.38 16
14 C 0.51 11.47 6.35 34.29 0.22 11.69 16
15 O -0.52 -12.10 13.60 -19.31 -0.26 -12.36 16
16 C -0.24 -4.14 6.05 -102.74 -0.62 -4.76 16
17 C 0.08 1.13 9.21 -38.26 -0.35 0.78 16
18 C -0.29 -2.89 5.06 -105.03 -0.53 -3.42 16
19 C 0.26 1.84 6.19 -81.17 -0.50 1.33 16
20 N -0.60 -5.41 5.14 -9.17 -0.05 -5.46 16
21 H 0.42 2.43 8.66 -40.82 -0.35 2.08 16
22 C 0.53 8.25 7.88 -13.11 -0.10 8.15 16
23 O -0.47 -9.54 16.23 -15.40 -0.25 -9.79 16
24 C -0.10 -0.24 4.48 -28.10 -0.13 -0.36 16
25 C -0.05 -0.15 0.77 -154.49 -0.12 -0.27 16
26 C -0.14 -0.17 8.48 37.16 0.32 0.15 16
27 C -0.16 -0.67 8.00 37.16 0.30 -0.37 16
28 C -0.16 -0.70 5.11 -27.19 -0.14 -0.84 16
29 C 0.42 3.78 5.65 -30.18 -0.17 3.61 16
30 O -0.45 -5.81 17.22 5.53 0.10 -5.72 16
31 H 0.06 1.24 7.79 -51.93 -0.40 0.84 16
32 H 0.04 0.95 6.06 -51.93 -0.31 0.64 16
33 H 0.04 0.76 8.14 -51.92 -0.42 0.34 16
34 H 0.07 1.67 8.14 -51.92 -0.42 1.25 16
35 H 0.06 1.57 3.21 -51.93 -0.17 1.41 16
36 H 0.27 7.80 8.31 -40.82 -0.34 7.46 16
37 H 0.16 2.33 7.36 -52.48 -0.39 1.95 16
38 H 0.11 0.06 8.14 -51.93 -0.42 -0.36 16
39 H 0.10 0.05 8.14 -51.93 -0.42 -0.37 16
40 H 0.06 0.05 8.14 -51.92 -0.42 -0.37 16
41 H 0.07 0.09 8.14 -51.93 -0.42 -0.33 16
42 H 0.06 0.03 8.14 -51.93 -0.42 -0.39 16
43 H 0.06 0.40 6.02 -51.93 -0.31 0.09 16
44 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16
45 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16
46 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16
47 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16
LS Contribution 374.12 15.07 5.64 5.64
Total: -1.00 -39.55 374.12 -7.24 -46.79
By element:
Atomic # 1 Polarization: 4.09 SS G_CDS: -6.52 Total: -2.43 kcal
Atomic # 6 Polarization: 2.54 SS G_CDS: -2.13 Total: 0.41 kcal
Atomic # 7 Polarization: -33.38 SS G_CDS: 0.73 Total: -32.65 kcal
Atomic # 8 Polarization: -35.45 SS G_CDS: -0.81 Total: -36.25 kcal
Atomic # 14 Polarization: 22.65 SS G_CDS: -4.15 Total: 18.50 kcal
Total LS contribution 5.64 Total: 5.64 kcal
Total: -39.55 -7.24 -46.79 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000188103640.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -89.575 kcal
(2) G-P(sol) polarization free energy of solvation -39.547 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.122 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.785 kcal
(6) G-S(sol) free energy of system = (1) + (5) -136.360 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds