Wall clock time and date at job start Wed Apr 1 2020 04:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47066 * 2 1 4 4 H 1.08991 * 109.47080 * 54.99897 * 3 2 1 5 5 C 1.50696 * 109.47185 * 175.00476 * 3 2 1 6 6 H 1.08004 * 120.00422 * 119.99876 * 5 3 2 7 7 C 1.37878 * 119.99839 * 299.99816 * 5 3 2 8 8 N 1.31509 * 120.00087 * 180.02562 * 7 5 3 9 9 Si 1.86806 * 120.00054 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.46935 * 89.99867 * 9 7 5 11 11 H 1.48495 * 109.47003 * 210.00004 * 9 7 5 12 12 H 1.48503 * 109.46786 * 330.00402 * 9 7 5 13 13 O 1.45208 * 109.46956 * 295.00059 * 3 2 1 14 14 C 1.34802 * 116.99772 * 89.99652 * 13 3 2 15 15 O 1.21557 * 120.00125 * 0.02562 * 14 13 3 16 16 C 1.47030 * 120.00086 * 179.97438 * 14 13 3 17 17 C 1.38872 * 120.91722 * 179.97438 * 16 14 13 18 18 C 1.41104 * 118.87773 * 180.02562 * 17 16 14 19 19 C 1.38504 * 120.68145 * 359.37643 * 18 17 16 20 20 N 1.34833 * 120.48652 * 1.13800 * 19 18 17 21 21 H 0.97001 * 119.02244 * 179.29774 * 20 19 18 22 22 C 1.34322 * 121.96141 * 359.00667 * 20 19 18 23 23 O 1.21790 * 120.09481 * 180.35792 * 22 20 19 24 24 C 1.50710 * 121.40490 * 181.20992 * 19 18 17 25 25 C 1.52563 * 111.34267 * 336.83424 * 24 19 18 26 26 C 1.53000 * 109.51139 * 174.79159 * 25 24 19 27 27 C 1.53003 * 109.50949 * 294.94019 * 25 24 19 28 28 C 1.53468 * 109.23591 * 54.86812 * 25 24 19 29 29 C 1.47298 * 118.96705 * 179.32445 * 18 17 16 30 30 O 1.21311 * 121.06296 * 348.60301 * 29 18 17 31 31 H 1.08996 * 109.46940 * 299.99539 * 1 2 3 32 32 H 1.09000 * 109.47724 * 60.00448 * 1 2 3 33 33 H 1.09010 * 109.47116 * 180.02562 * 1 2 3 34 34 H 1.09011 * 109.47109 * 239.99973 * 2 1 3 35 35 H 1.09000 * 109.47469 * 120.00039 * 2 1 3 36 36 H 0.97006 * 120.00439 * 179.97438 * 8 7 5 37 37 H 1.08006 * 120.56715 * 359.97438 * 17 16 14 38 38 H 1.09001 * 109.10566 * 97.30843 * 24 19 18 39 39 H 1.08998 * 109.10742 * 216.36158 * 24 19 18 40 40 H 1.09011 * 109.46419 * 60.00459 * 26 25 24 41 41 H 1.09003 * 109.47144 * 179.97438 * 26 25 24 42 42 H 1.08992 * 109.47177 * 300.00774 * 26 25 24 43 43 H 1.08998 * 109.47123 * 59.99483 * 27 25 24 44 44 H 1.08997 * 109.46566 * 180.02562 * 27 25 24 45 45 H 1.08997 * 109.46763 * 299.99566 * 27 25 24 46 46 H 1.08992 * 109.90446 * 55.84454 * 28 25 24 47 47 H 1.09006 * 109.89872 * 176.89162 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5418 1.4443 0.1237 6 1 4.1471 1.8889 -0.6525 7 6 4.1433 0.8784 1.2278 8 7 5.4539 0.8805 1.3361 9 14 3.0964 0.1088 2.5700 10 1 2.8756 -1.3272 2.2632 11 1 3.7938 0.2348 3.8750 12 1 1.7877 0.8072 2.6385 13 8 1.6558 2.0917 -1.2408 14 6 0.4675 2.7280 -1.2561 15 8 -0.2282 2.7404 -0.2594 16 6 0.0135 3.4082 -2.4780 17 6 -1.2074 4.0691 -2.5150 18 6 -1.6009 4.7070 -3.7105 19 6 -0.7796 4.6871 -4.8256 20 7 0.4013 4.0372 -4.7940 21 1 0.9551 4.0282 -5.5903 22 6 0.8365 3.4066 -3.6907 23 8 1.9121 2.8354 -3.6979 24 6 -1.1716 5.3858 -6.1022 25 6 -2.6834 5.5688 -6.1933 26 6 -3.0244 6.3934 -7.4362 27 6 -3.3593 4.1993 -6.2862 28 6 -3.1805 6.3017 -4.9399 29 6 -2.9021 5.3957 -3.7567 30 8 -3.7181 5.2520 -2.8706 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3634 -1.0278 0.0005 34 1 1.8933 -0.5139 -0.8901 35 1 1.8934 -0.5138 0.8900 36 1 5.8771 0.4827 2.1130 37 1 -1.8453 4.0937 -1.6438 38 1 -0.6912 6.3637 -6.1357 39 1 -0.8322 4.7934 -6.9519 40 1 -2.6673 5.8743 -8.3257 41 1 -4.1047 6.5234 -7.5009 42 1 -2.5440 7.3694 -7.3677 43 1 -3.1173 3.6138 -5.3993 44 1 -4.4393 4.3309 -6.3517 45 1 -3.0027 3.6777 -7.1743 46 1 -2.6481 7.2460 -4.8266 47 1 -4.2517 6.4872 -5.0189 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188103640.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:58 Heat of formation + Delta-G solvation = -165.042447 kcal Electronic energy + Delta-G solvation = -31336.139532 eV Core-core repulsion = 27062.010129 eV Total energy + Delta-G solvation = -4274.129403 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.87664 -41.34065 -40.66554 -38.80053 -37.96495 -37.46003 -35.51546 -34.97949 -33.94446 -32.03563 -30.06907 -29.84307 -28.58642 -28.06581 -25.41437 -24.89320 -24.57298 -23.82114 -22.35902 -21.42299 -20.00478 -19.40140 -19.00749 -18.84806 -17.98875 -17.57262 -17.40738 -17.28158 -16.87635 -16.62737 -16.29909 -16.12075 -15.75902 -15.36085 -15.30001 -14.96714 -14.87617 -14.64268 -14.24449 -14.12364 -13.90782 -13.60937 -13.50211 -13.28882 -13.22004 -13.14546 -12.87039 -12.76832 -12.62402 -12.42765 -12.15300 -12.07243 -11.80451 -11.76172 -11.74531 -11.62212 -11.56486 -11.49255 -11.26885 -11.16812 -10.76156 -10.71700 -9.37951 -8.47350 -6.55816 -0.90969 -0.09956 1.14314 1.19339 1.26781 1.33563 1.38152 1.56760 1.94709 2.17119 2.39782 2.83551 2.87870 2.95717 3.20143 3.34756 3.64807 3.75945 3.77132 3.98250 4.04307 4.12060 4.12582 4.21000 4.33653 4.41687 4.50099 4.58730 4.62328 4.65675 4.75776 4.85015 4.88831 4.91740 4.93748 4.99331 5.00774 5.10979 5.19826 5.26750 5.28233 5.30874 5.33061 5.39981 5.45395 5.59875 5.62915 6.12870 6.46802 6.49882 6.63934 6.87369 7.08966 8.69380 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.022421 B = 0.002753 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.552240 B =10166.970236 C =10804.548386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.144 4.144 3 C 0.197 3.803 4 H 0.030 0.970 5 C -0.539 4.539 6 H 0.037 0.963 7 C 0.030 3.970 8 N -0.931 5.931 9 Si 0.941 3.059 10 H -0.248 1.248 11 H -0.278 1.278 12 H -0.256 1.256 13 O -0.333 6.333 14 C 0.508 3.492 15 O -0.544 6.544 16 C -0.302 4.302 17 C 0.114 3.886 18 C -0.319 4.319 19 C 0.316 3.684 20 N -0.576 5.576 21 H 0.442 0.558 22 C 0.536 3.464 23 O -0.530 6.530 24 C -0.101 4.101 25 C -0.043 4.043 26 C -0.137 4.137 27 C -0.165 4.165 28 C -0.149 4.149 29 C 0.422 3.578 30 O -0.500 6.500 31 H 0.050 0.950 32 H 0.039 0.961 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.276 0.724 37 H 0.142 0.858 38 H 0.158 0.842 39 H 0.141 0.859 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.033 0.967 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.137 0.863 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.784 14.280 -25.411 36.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.181 4.181 3 C 0.142 3.858 4 H 0.047 0.953 5 C -0.577 4.577 6 H 0.055 0.945 7 C -0.170 4.170 8 N -0.569 5.569 9 Si 0.766 3.234 10 H -0.173 1.173 11 H -0.204 1.204 12 H -0.181 1.181 13 O -0.248 6.248 14 C 0.356 3.644 15 O -0.439 6.439 16 C -0.308 4.308 17 C 0.093 3.907 18 C -0.325 4.325 19 C 0.197 3.803 20 N -0.207 5.207 21 H 0.286 0.714 22 C 0.333 3.667 23 O -0.407 6.407 24 C -0.137 4.137 25 C -0.044 4.044 26 C -0.194 4.194 27 C -0.222 4.222 28 C -0.186 4.186 29 C 0.303 3.697 30 O -0.378 6.378 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.160 0.840 38 H 0.175 0.825 39 H 0.159 0.841 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.099 0.901 43 H 0.052 0.948 44 H 0.085 0.915 45 H 0.100 0.900 46 H 0.155 0.845 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -21.513 13.703 -24.403 35.300 hybrid contribution 0.616 -0.814 1.279 1.636 sum -20.897 12.889 -23.124 33.727 Atomic orbital electron populations 1.21788 0.94452 1.02054 1.01245 1.22245 0.96575 0.97374 1.01944 1.20708 0.94069 0.89939 0.81049 0.95271 1.20941 0.89675 1.39958 1.07089 0.94456 1.25608 0.96257 0.95472 0.99644 1.69968 1.10372 1.45534 1.31038 0.85958 0.79229 0.80316 0.77936 1.17278 1.20418 1.18060 1.86776 1.35057 1.62634 1.40374 1.20833 0.79767 0.76033 0.87752 1.90757 1.56231 1.61019 1.35854 1.20743 1.00529 1.15953 0.93545 1.22043 0.89733 0.81165 0.97771 1.19879 1.02274 1.16363 0.93966 1.22052 0.80623 0.81080 0.96502 1.43273 1.18663 1.42909 1.15806 0.71407 1.17962 0.85857 0.79285 0.83599 1.91097 1.22670 1.44050 1.82931 1.21589 0.97994 1.03946 0.90193 1.20463 0.92028 0.96108 0.95784 1.21840 1.02860 1.00010 0.94665 1.22180 1.01879 0.95951 1.02191 1.22626 1.05735 0.99302 0.90984 1.22745 0.82544 0.78059 0.86389 1.90601 1.48130 1.58836 1.40192 0.93124 0.94171 0.90323 0.91457 0.91849 0.91440 0.84011 0.82467 0.84087 0.90555 0.91641 0.90146 0.94828 0.91495 0.89981 0.84502 0.87364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.91 8.56 71.98 0.62 -5.30 16 2 C -0.14 -7.21 5.14 30.59 0.16 -7.05 16 3 C 0.20 11.33 1.84 29.85 0.06 11.39 16 4 H 0.03 1.76 6.22 -2.39 -0.01 1.74 16 5 C -0.54 -35.25 9.48 25.60 0.24 -35.01 16 6 H 0.04 2.73 8.06 -2.91 -0.02 2.70 16 7 C 0.03 1.85 5.45 84.66 0.46 2.31 16 8 N -0.93 -60.66 13.96 21.45 0.30 -60.36 16 9 Si 0.94 47.50 24.41 68.60 1.67 49.18 16 10 H -0.25 -11.48 6.83 99.48 0.68 -10.80 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 12 H -0.26 -12.74 6.53 99.48 0.65 -12.09 16 13 O -0.33 -18.53 8.15 -50.51 -0.41 -18.94 16 14 C 0.51 24.43 6.35 70.13 0.45 24.87 16 15 O -0.54 -27.16 13.60 19.65 0.27 -26.89 16 16 C -0.30 -11.10 6.05 -18.65 -0.11 -11.22 16 17 C 0.11 3.32 9.21 23.13 0.21 3.53 16 18 C -0.32 -5.85 5.06 -20.13 -0.10 -5.95 16 19 C 0.32 3.26 6.19 42.16 0.26 3.52 16 20 N -0.58 -9.08 5.14 -301.35 -1.55 -10.63 16 21 H 0.44 3.53 8.66 -92.71 -0.80 2.73 16 22 C 0.54 17.28 7.88 86.49 0.68 17.96 16 23 O -0.53 -22.89 16.23 14.97 0.24 -22.65 16 24 C -0.10 0.18 4.48 29.71 0.13 0.31 16 25 C -0.04 -0.01 0.77 -52.17 -0.04 -0.05 16 26 C -0.14 0.55 8.48 71.98 0.61 1.16 16 27 C -0.16 -0.78 8.00 71.98 0.58 -0.21 16 28 C -0.15 -0.69 5.11 30.29 0.15 -0.54 16 29 C 0.42 6.92 5.65 28.36 0.16 7.08 16 30 O -0.50 -12.94 17.22 -3.13 -0.05 -12.99 16 31 H 0.05 2.21 7.79 -2.39 -0.02 2.19 16 32 H 0.04 1.73 6.06 -2.39 -0.01 1.72 16 33 H 0.08 2.75 8.14 -2.38 -0.02 2.74 16 34 H 0.07 3.34 8.14 -2.38 -0.02 3.32 16 35 H 0.06 3.13 3.21 -2.39 -0.01 3.12 16 36 H 0.28 16.47 8.31 -92.70 -0.77 15.69 16 37 H 0.14 4.54 7.36 -2.91 -0.02 4.52 16 38 H 0.16 -1.22 8.14 -2.39 -0.02 -1.23 16 39 H 0.14 -1.01 8.14 -2.39 -0.02 -1.03 16 40 H 0.08 -0.41 8.14 -2.38 -0.02 -0.43 16 41 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 42 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 43 H 0.03 0.36 6.02 -2.39 -0.01 0.34 16 44 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 45 H 0.08 0.14 8.14 -2.39 -0.02 0.12 16 46 H 0.14 -0.06 8.14 -2.39 -0.02 -0.08 16 47 H 0.11 0.47 8.14 -2.38 -0.02 0.45 16 Total: -1.00 -98.92 374.12 5.12 -93.80 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: 0.13 Total: 2.67 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 4.51 Total: 6.82 kcal Atomic # 7 Polarization: -69.74 SS G_CDS: -1.25 Total: -70.99 kcal Atomic # 8 Polarization: -81.52 SS G_CDS: 0.05 Total: -81.48 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 1.67 Total: 49.18 kcal Total: -98.92 5.12 -93.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188103640.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.241 kcal (2) G-P(sol) polarization free energy of solvation -98.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds